Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT1991

Experiment: aerobic shaking 48 hr copy B

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	aerobic shaking 48 hr copy B
2,499,505	+		BT1989	0.86	-2.4
2,499,521	+		BT1989	0.87	-2.0
2,499,525	+		BT1989	0.88	+0.0
2,499,525	+		BT1989	0.88	-0.2
2,499,525	+		BT1989	0.88	+0.7
2,499,526	-		BT1989	0.88	-0.3
2,499,576	+				+0.3
2,499,648	+				-0.0
2,499,663	-				+1.7
2,499,667	+				-0.7
2,499,668	-				+1.1
2,499,668	-				-2.4
2,499,668	-				-1.3
2,499,678	+				+0.1
2,499,679	-				-0.9
2,499,730	-				-2.3
2,499,730	-				+1.7
2,499,922	-				-2.3
2,500,029	-		BT1990	0.14	-2.9
2,500,032	-		BT1990	0.15	-1.9
2,500,120	-		BT1990	0.33	-1.2
2,500,341	-		BT1990	0.79	-0.7
2,500,454	-				+1.0
2,500,605	-		BT1991	0.27	-2.9
2,500,605	-		BT1991	0.27	-0.9
2,500,704	-				-0.3
2,500,785	-		BT1991	0.68	-3.4
2,500,981	-				-1.2
2,501,004	-				-1.0
2,501,074	-				-1.9
2,501,074	-				-0.3
2,501,142	-				-1.6
2,501,165	+				-0.7
2,501,165	+				-1.3
2,501,166	-				-3.6
2,501,168	-				-0.5
2,501,168	-				+1.7
2,501,230	-				+0.5
2,501,234	-				+1.1
2,501,234	-				-0.3
2,501,236	+				-2.7
2,501,265	-				-0.8
2,501,369	-				-0.7
2,501,382	+				+0.2
2,501,383	-				-0.9
2,501,385	-				-1.9
2,501,400	-				-0.9
2,501,436	-				-1.9
2,501,469	-				-0.3
2,501,472	+				+0.3
2,501,540	+		BT1992	0.10	-1.2
2,501,540	+		BT1992	0.10	-0.3
2,501,541	-		BT1992	0.10	-0.7
2,501,556	-		BT1992	0.11	-1.5
2,501,577	+		BT1992	0.11	-1.7
2,501,577	+		BT1992	0.11	+0.7
2,501,577	+		BT1992	0.11	+0.1
2,501,598	+		BT1992	0.12	-1.5
2,501,647	+		BT1992	0.14	-0.8
2,501,647	+		BT1992	0.14	-0.3
2,501,648	-		BT1992	0.14	-1.8
2,501,651	-		BT1992	0.14	-0.2
2,501,667	+		BT1992	0.14	-1.7
2,501,723	+		BT1992	0.16	-1.3
2,501,723	+		BT1992	0.16	+0.3
2,501,727	+		BT1992	0.16	-1.3
2,501,727	+		BT1992	0.16	-1.4
2,501,728	-		BT1992	0.16	-0.3
2,501,730	-		BT1992	0.16	-3.8
2,501,795	+		BT1992	0.18	-1.2
2,501,796	-		BT1992	0.18	-1.3
2,501,799	+		BT1992	0.18	+0.1
2,501,805	-		BT1992	0.19	-0.2
2,501,805	-		BT1992	0.19	+1.7
2,501,850	+		BT1992	0.20	-1.2
2,501,850	+		BT1992	0.20	-0.7
2,501,850	+		BT1992	0.20	+0.1