Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT1553

Experiment: aerobic shaking 48 hr copy B

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	aerobic shaking 48 hr copy B
1,919,148	+		BT1552	0.71	-0.1
1,919,148	+		BT1552	0.71	+0.1
1,919,191	+		BT1552	0.72	-1.6
1,919,299	+		BT1552	0.75	-1.1
1,919,315	+		BT1552	0.76	+2.7
1,919,316	-		BT1552	0.76	-1.2
1,919,347	+		BT1552	0.77	+1.7
1,919,383	-		BT1552	0.78	+0.7
1,919,383	-		BT1552	0.78	-0.5
1,919,403	-		BT1552	0.79	-1.3
1,919,465	+		BT1552	0.80	-0.6
1,919,587	+		BT1552	0.84	-0.6
1,919,591	+		BT1552	0.84	+0.2
1,919,645	+		BT1552	0.86	-1.8
1,919,645	+		BT1552	0.86	-1.0
1,919,678	+		BT1552	0.87	+0.1
1,919,710	+		BT1552	0.88	-0.3
1,919,711	-		BT1552	0.88	+0.1
1,919,714	+		BT1552	0.88	+1.3
1,919,722	-		BT1552	0.88	+0.7
1,919,747	-		BT1552	0.89	-0.9
1,919,747	-		BT1552	0.89	-0.5
1,919,758	+		BT1552	0.89	+0.7
1,919,759	-		BT1552	0.89	+1.4
1,919,760	+		BT1552	0.89	-0.5
1,919,760	+		BT1552	0.89	-0.6
1,919,768	-		BT1552	0.90	+2.3
1,919,898	+				+0.4
1,919,898	-				-2.0
1,919,904	-				-2.8
1,919,986	-				-1.3
1,920,035	+				-0.9
1,920,082	+				-1.8
1,920,103	-				-0.9
1,920,229	-				+0.4
1,920,243	+				-1.2
1,920,252	-				-0.6
1,920,324	+		BT1553	0.14	-0.8
1,920,324	+		BT1553	0.14	+0.7
1,920,328	+		BT1553	0.15	-0.3
1,920,329	-		BT1553	0.15	-0.6
1,920,329	-		BT1553	0.15	-1.4
1,920,388	+		BT1553	0.19	-3.5
1,920,430	-		BT1553	0.22	-1.5
1,920,431	+		BT1553	0.22	-2.6
1,920,432	-		BT1553	0.22	-0.9
1,920,434	+		BT1553	0.23	-0.9
1,920,463	-		BT1553	0.25	-1.1
1,920,463	-		BT1553	0.25	-1.5
1,920,466	-		BT1553	0.25	-0.9
1,920,478	+		BT1553	0.26	-0.9
1,920,545	+		BT1553	0.31	-2.2
1,920,545	+		BT1553	0.31	-2.5
1,920,545	+		BT1553	0.31	+0.1
1,920,565	+		BT1553	0.32	-2.3
1,920,570	+		BT1553	0.33	-1.3
1,920,584	+		BT1553	0.34	-0.2
1,920,586	+		BT1553	0.34	-0.6
1,920,586	+		BT1553	0.34	-0.3
1,920,652	-		BT1553	0.39	-0.9
1,920,681	-		BT1553	0.41	-2.2
1,920,681	-		BT1553	0.41	-1.3
1,920,681	-		BT1553	0.41	+0.2
1,920,683	-		BT1553	0.41	-1.1
1,920,683	-		BT1553	0.41	-0.4
1,920,693	+		BT1553	0.42	-1.2
1,920,702	+		BT1553	0.43	-2.7
1,920,702	+		BT1553	0.43	-1.9
1,920,749	+		BT1553	0.46	-1.1
1,920,749	+		BT1553	0.46	-0.3
1,920,830	+		BT1553	0.52	-1.9
1,920,831	-		BT1553	0.52	+0.1
1,920,831	-		BT1553	0.52	-0.6
1,920,852	+		BT1553	0.54	-1.1
1,920,852	+		BT1553	0.54	-0.4
1,920,912	-		BT1553	0.59	+0.1
1,920,932	-		BT1553	0.60	-1.6
1,920,981	+		BT1553	0.64	-1.6
1,921,009	+		BT1553	0.66	-1.6
1,921,009	+		BT1553	0.66	-2.8
1,921,009	+		BT1553	0.66	-0.1
1,921,054	+		BT1553	0.69	-1.5
1,921,055	-		BT1553	0.69	-2.7
1,921,059	-		BT1553	0.70	-0.6
1,921,091	-		BT1553	0.72	+0.1
1,921,182	+		BT1553	0.79	+0.7
1,921,330	-				-1.8
1,921,330	-				-1.1
1,921,336	+				-0.7
1,921,379	+				-1.3
1,921,379	+				-0.6
1,921,379	+				+1.3
1,921,380	-				-0.9
1,921,413	+				-2.0
1,921,470	-				-1.1
1,921,470	-				-1.6
1,921,473	+				-1.0
1,921,509	-				-0.9
1,921,558	-				-0.3
1,921,561	+				-0.6
1,921,568	-				-1.5
1,921,665	+				-0.6
1,921,665	+				-0.7
1,921,666	-				-1.8
1,921,667	+				-1.1
1,921,667	+				-1.5
1,921,668	-				-0.9
1,921,669	+				-3.7
1,921,669	+				-0.3
1,921,669	+				-2.1
1,921,715	+		BT1554	0.13	+1.5
1,921,716	-		BT1554	0.13	-2.2
1,921,716	-		BT1554	0.13	-1.1
1,921,774	+		BT1554	0.19	-4.1
1,921,836	+		BT1554	0.24	+0.7
1,922,165	-		BT1554	0.54	+0.4
1,922,223	-		BT1554	0.59	-0.1
1,922,326	+		BT1554	0.68	+1.7
1,922,329	-		BT1554	0.69	-1.1
1,922,355	+		BT1554	0.71	+0.4
1,922,425	+		BT1554	0.77	-0.3
1,922,425	+		BT1554	0.77	-2.5
1,922,426	-		BT1554	0.78	-1.1
1,922,436	+		BT1554	0.78	-1.3
1,922,437	-		BT1554	0.79	-0.1
1,922,453	+		BT1554	0.80	-0.9
1,922,454	-		BT1554	0.80	-1.3