Experiment: aerobic shaking 48 hr copy B
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0882 and BT0883 are separated by 5 nucleotides BT0883 and BT0884 are separated by 137 nucleotides BT0884 and BT0885 are separated by 45 nucleotides
BT0882: BT0882 - conserved hypothetical protein (NCBI ptt file), at 1,081,632 to 1,082,726
BT0882
BT0883: BT0883 - conserved hypothetical protein (NCBI ptt file), at 1,082,732 to 1,083,562
BT0883
BT0884: BT0884 - outer membrane efflux protein oprM precursor (NCBI ptt file), at 1,083,700 to 1,085,097
BT0884
BT0885: BT0885 - putative cation efflux pump (NCBI ptt file), at 1,085,143 to 1,086,240
BT0885
Position (kb)
1083
1084
1085
1086 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1083.523 kb on + strand at 1083.523 kb on + strand at 1083.526 kb on + strand at 1083.570 kb on + strand at 1083.578 kb on + strand at 1083.675 kb on - strand at 1084.056 kb on - strand, within BT0884 at 1084.076 kb on - strand, within BT0884 at 1084.192 kb on - strand, within BT0884 at 1084.269 kb on + strand, within BT0884 at 1084.277 kb on + strand, within BT0884 at 1084.378 kb on - strand, within BT0884 at 1084.450 kb on - strand, within BT0884 at 1084.476 kb on - strand, within BT0884 at 1084.505 kb on - strand, within BT0884 at 1084.507 kb on - strand, within BT0884 at 1084.528 kb on - strand, within BT0884 at 1084.545 kb on - strand, within BT0884 at 1084.602 kb on - strand, within BT0884 at 1084.951 kb on - strand, within BT0884 at 1085.406 kb on + strand, within BT0885 at 1085.636 kb on + strand, within BT0885 at 1085.735 kb on - strand, within BT0885 at 1085.753 kb on - strand, within BT0885 at 1085.863 kb on - strand, within BT0885
Per-strain Table
Position Strand Gene LocusTag Fraction aerobic shaking 48 hr copy B remove 1,083,523 + -1.2 1,083,523 + -2.6 1,083,526 + +0.3 1,083,570 + -0.4 1,083,578 + -0.4 1,083,675 - -2.1 1,084,056 - BT0884 0.25 -1.1 1,084,076 - BT0884 0.27 -2.2 1,084,192 - BT0884 0.35 -2.8 1,084,269 + BT0884 0.41 -0.7 1,084,277 + BT0884 0.41 -1.4 1,084,378 - BT0884 0.48 -2.4 1,084,450 - BT0884 0.54 -1.7 1,084,476 - BT0884 0.56 -2.6 1,084,505 - BT0884 0.58 -2.8 1,084,507 - BT0884 0.58 -1.5 1,084,528 - BT0884 0.59 +0.6 1,084,545 - BT0884 0.60 -0.4 1,084,602 - BT0884 0.65 -0.7 1,084,951 - BT0884 0.89 -0.7 1,085,406 + BT0885 0.24 -0.9 1,085,636 + BT0885 0.45 +0.1 1,085,735 - BT0885 0.54 -0.4 1,085,753 - BT0885 0.56 +0.1 1,085,863 - BT0885 0.66 +0.1
Or see this region's nucleotide sequence