Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT0884
Experiment: aerobic shaking 48 hr copy B
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | aerobic shaking 48 hr copy B |
---|---|---|---|---|---|
remove | |||||
1,083,523 | + | -1.2 | |||
1,083,523 | + | -2.6 | |||
1,083,526 | + | +0.3 | |||
1,083,570 | + | -0.4 | |||
1,083,578 | + | -0.4 | |||
1,083,675 | - | -2.1 | |||
1,084,056 | - | BT0884 | 0.25 | -1.1 | |
1,084,076 | - | BT0884 | 0.27 | -2.2 | |
1,084,192 | - | BT0884 | 0.35 | -2.8 | |
1,084,269 | + | BT0884 | 0.41 | -0.7 | |
1,084,277 | + | BT0884 | 0.41 | -1.4 | |
1,084,378 | - | BT0884 | 0.48 | -2.4 | |
1,084,450 | - | BT0884 | 0.54 | -1.7 | |
1,084,476 | - | BT0884 | 0.56 | -2.6 | |
1,084,505 | - | BT0884 | 0.58 | -2.8 | |
1,084,507 | - | BT0884 | 0.58 | -1.5 | |
1,084,528 | - | BT0884 | 0.59 | +0.6 | |
1,084,545 | - | BT0884 | 0.60 | -0.4 | |
1,084,602 | - | BT0884 | 0.65 | -0.7 | |
1,084,951 | - | BT0884 | 0.89 | -0.7 | |
1,085,406 | + | BT0885 | 0.24 | -0.9 | |
1,085,490 | + | BT0885 | 0.32 | +1.1 | |
1,085,636 | + | BT0885 | 0.45 | +0.1 | |
1,085,735 | - | BT0885 | 0.54 | -0.4 | |
1,085,753 | - | BT0885 | 0.56 | +0.1 | |
1,085,863 | - | BT0885 | 0.66 | +0.1 |
Or see this region's nucleotide sequence