Strain Fitness in Methanococcus maripaludis S2 around MMP_RS09045

Experiment: Formate McCas no stress control 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS03155 and MMP_RS03160 are separated by 34 nucleotidesMMP_RS03160 and MMP_RS09045 are separated by 94 nucleotidesMMP_RS09045 and MMP_RS03170 are separated by 120 nucleotidesMMP_RS03170 and MMP_RS03175 are separated by 144 nucleotides MMP_RS03155: MMP_RS03155 - precorrin-6A reductase, at 595,456 to 596,202 _RS03155 MMP_RS03160: MMP_RS03160 - class III signal peptide-containing protein, at 596,237 to 596,920 _RS03160 MMP_RS09045: MMP_RS09045 - class III signal peptide-containing protein, at 597,015 to 597,902 _RS09045 MMP_RS03170: MMP_RS03170 - orotidine-5'-phosphate decarboxylase, at 598,023 to 598,676 _RS03170 MMP_RS03175: MMP_RS03175 - translation initiation factor eIF-1A, at 598,821 to 599,135 _RS03175 Position (kb) 597 598Strain fitness (log2 ratio) -2 -1 0 1at 596.146 kb on + strandat 596.161 kb on + strandat 596.226 kb on + strandat 596.229 kb on - strandat 596.230 kb on + strandat 596.271 kb on + strandat 596.271 kb on + strandat 596.273 kb on + strandat 596.334 kb on + strand, within MMP_RS03160at 596.360 kb on - strand, within MMP_RS03160at 596.528 kb on + strand, within MMP_RS03160at 596.579 kb on + strand, within MMP_RS03160at 596.614 kb on - strand, within MMP_RS03160at 596.614 kb on - strand, within MMP_RS03160at 596.635 kb on + strand, within MMP_RS03160at 596.635 kb on + strand, within MMP_RS03160at 596.639 kb on - strand, within MMP_RS03160at 596.643 kb on - strand, within MMP_RS03160at 596.643 kb on - strand, within MMP_RS03160at 596.643 kb on - strand, within MMP_RS03160at 596.643 kb on - strand, within MMP_RS03160at 596.643 kb on - strand, within MMP_RS03160at 596.643 kb on - strand, within MMP_RS03160at 596.643 kb on - strand, within MMP_RS03160at 596.644 kb on + strand, within MMP_RS03160at 596.644 kb on + strand, within MMP_RS03160at 596.644 kb on + strand, within MMP_RS03160at 596.644 kb on + strand, within MMP_RS03160at 596.644 kb on + strand, within MMP_RS03160at 596.648 kb on + strand, within MMP_RS03160at 596.666 kb on - strand, within MMP_RS03160at 596.667 kb on + strand, within MMP_RS03160at 596.667 kb on + strand, within MMP_RS03160at 596.686 kb on + strand, within MMP_RS03160at 596.741 kb on - strand, within MMP_RS03160at 596.742 kb on + strand, within MMP_RS03160at 596.801 kb on - strand, within MMP_RS03160at 596.801 kb on - strand, within MMP_RS03160at 596.802 kb on + strand, within MMP_RS03160at 596.861 kb on - strandat 596.861 kb on - strandat 596.882 kb on - strandat 596.882 kb on - strandat 596.920 kb on - strandat 596.920 kb on - strandat 596.920 kb on - strandat 596.922 kb on - strandat 596.923 kb on + strandat 596.923 kb on + strandat 596.923 kb on + strandat 596.924 kb on - strandat 596.924 kb on - strandat 596.924 kb on - strandat 596.925 kb on + strandat 596.952 kb on + strandat 596.952 kb on + strandat 596.956 kb on - strandat 596.956 kb on - strandat 596.956 kb on - strandat 596.956 kb on - strandat 596.956 kb on - strandat 596.957 kb on + strandat 596.957 kb on + strandat 596.959 kb on + strandat 596.961 kb on + strandat 596.989 kb on - strandat 596.990 kb on + strandat 597.038 kb on - strandat 597.042 kb on + strandat 597.043 kb on - strandat 597.043 kb on - strandat 597.080 kb on - strandat 597.080 kb on - strandat 597.108 kb on - strand, within MMP_RS09045at 597.115 kb on - strand, within MMP_RS09045at 597.147 kb on + strand, within MMP_RS09045at 597.197 kb on + strand, within MMP_RS09045at 597.197 kb on + strand, within MMP_RS09045at 597.209 kb on + strand, within MMP_RS09045at 597.209 kb on + strand, within MMP_RS09045at 597.227 kb on - strand, within MMP_RS09045at 597.227 kb on - strand, within MMP_RS09045at 597.228 kb on + strand, within MMP_RS09045at 597.250 kb on - strand, within MMP_RS09045at 597.266 kb on - strand, within MMP_RS09045at 597.328 kb on - strand, within MMP_RS09045at 597.344 kb on - strand, within MMP_RS09045at 597.345 kb on + strand, within MMP_RS09045at 597.505 kb on + strand, within MMP_RS09045at 597.514 kb on + strand, within MMP_RS09045at 597.569 kb on - strand, within MMP_RS09045at 597.593 kb on - strand, within MMP_RS09045at 597.593 kb on - strand, within MMP_RS09045at 597.593 kb on - strand, within MMP_RS09045at 597.593 kb on - strand, within MMP_RS09045at 597.609 kb on + strand, within MMP_RS09045at 597.611 kb on - strand, within MMP_RS09045at 597.612 kb on + strand, within MMP_RS09045at 597.612 kb on + strand, within MMP_RS09045at 597.626 kb on - strand, within MMP_RS09045at 597.626 kb on - strand, within MMP_RS09045at 597.627 kb on + strand, within MMP_RS09045at 597.629 kb on - strand, within MMP_RS09045at 597.629 kb on - strand, within MMP_RS09045at 597.644 kb on - strand, within MMP_RS09045at 597.645 kb on + strand, within MMP_RS09045at 597.662 kb on - strand, within MMP_RS09045at 597.666 kb on + strand, within MMP_RS09045at 597.680 kb on - strand, within MMP_RS09045at 597.681 kb on + strand, within MMP_RS09045at 597.797 kb on - strand, within MMP_RS09045at 597.840 kb on - strandat 597.855 kb on - strandat 597.855 kb on - strandat 597.902 kb on - strandat 597.902 kb on - strandat 597.903 kb on + strandat 597.903 kb on + strandat 597.906 kb on - strandat 597.920 kb on + strandat 597.958 kb on - strandat 597.965 kb on + strandat 597.965 kb on + strandat 597.965 kb on + strandat 597.965 kb on + strandat 597.966 kb on - strandat 597.966 kb on - strandat 597.967 kb on + strandat 597.969 kb on + strandat 597.982 kb on + strandat 598.013 kb on - strandat 598.014 kb on + strandat 598.024 kb on - strandat 598.025 kb on + strandat 598.411 kb on + strandat 598.533 kb on + strandat 598.677 kb on + strandat 598.689 kb on + strandat 598.863 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas no stress control 2
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596,146 + -1.7
596,161 + -0.1
596,226 + -0.0
596,229 - +0.0
596,230 + -0.1
596,271 + -0.5
596,271 + -0.5
596,273 + -2.7
596,334 + MMP_RS03160 0.14 +0.3
596,360 - MMP_RS03160 0.18 +0.1
596,528 + MMP_RS03160 0.43 +0.1
596,579 + MMP_RS03160 0.50 +0.0
596,614 - MMP_RS03160 0.55 +0.0
596,614 - MMP_RS03160 0.55 -0.3
596,635 + MMP_RS03160 0.58 +0.4
596,635 + MMP_RS03160 0.58 -0.2
596,639 - MMP_RS03160 0.59 +0.1
596,643 - MMP_RS03160 0.59 -0.4
596,643 - MMP_RS03160 0.59 +0.3
596,643 - MMP_RS03160 0.59 +0.5
596,643 - MMP_RS03160 0.59 +0.4
596,643 - MMP_RS03160 0.59 +0.1
596,643 - MMP_RS03160 0.59 -0.2
596,643 - MMP_RS03160 0.59 +0.3
596,644 + MMP_RS03160 0.60 +0.0
596,644 + MMP_RS03160 0.60 -0.0
596,644 + MMP_RS03160 0.60 -0.1
596,644 + MMP_RS03160 0.60 +0.1
596,644 + MMP_RS03160 0.60 -0.1
596,648 + MMP_RS03160 0.60 -0.2
596,666 - MMP_RS03160 0.63 -0.3
596,667 + MMP_RS03160 0.63 -0.3
596,667 + MMP_RS03160 0.63 +0.2
596,686 + MMP_RS03160 0.66 +0.3
596,741 - MMP_RS03160 0.74 -0.3
596,742 + MMP_RS03160 0.74 +0.4
596,801 - MMP_RS03160 0.82 +0.2
596,801 - MMP_RS03160 0.82 +0.2
596,802 + MMP_RS03160 0.83 +0.0
596,861 - -0.3
596,861 - +0.1
596,882 - -0.1
596,882 - +0.6
596,920 - +0.1
596,920 - +0.8
596,920 - +0.3
596,922 - +0.2
596,923 + +1.0
596,923 + -0.2
596,923 + +0.3
596,924 - -0.9
596,924 - +0.0
596,924 - +0.2
596,925 + +0.3
596,952 + +0.3
596,952 + +0.2
596,956 - -0.3
596,956 - -0.1
596,956 - +0.7
596,956 - +0.5
596,956 - +0.7
596,957 + -0.0
596,957 + -0.2
596,959 + +0.2
596,961 + +0.1
596,989 - +0.3
596,990 + +0.7
597,038 - +0.1
597,042 + +0.0
597,043 - +0.2
597,043 - +0.4
597,080 - -0.4
597,080 - -0.2
597,108 - MMP_RS09045 0.10 -0.0
597,115 - MMP_RS09045 0.11 +0.5
597,147 + MMP_RS09045 0.15 -0.1
597,197 + MMP_RS09045 0.20 +0.2
597,197 + MMP_RS09045 0.20 +0.2
597,209 + MMP_RS09045 0.22 +0.2
597,209 + MMP_RS09045 0.22 +0.1
597,227 - MMP_RS09045 0.24 +0.1
597,227 - MMP_RS09045 0.24 +0.1
597,228 + MMP_RS09045 0.24 -0.1
597,250 - MMP_RS09045 0.26 +0.2
597,266 - MMP_RS09045 0.28 +0.0
597,328 - MMP_RS09045 0.35 -0.2
597,344 - MMP_RS09045 0.37 +0.5
597,345 + MMP_RS09045 0.37 +0.7
597,505 + MMP_RS09045 0.55 -0.1
597,514 + MMP_RS09045 0.56 -1.1
597,569 - MMP_RS09045 0.62 +0.3
597,593 - MMP_RS09045 0.65 +0.2
597,593 - MMP_RS09045 0.65 +0.4
597,593 - MMP_RS09045 0.65 -0.2
597,593 - MMP_RS09045 0.65 -0.2
597,609 + MMP_RS09045 0.67 +0.5
597,611 - MMP_RS09045 0.67 -0.1
597,612 + MMP_RS09045 0.67 -0.2
597,612 + MMP_RS09045 0.67 -0.1
597,626 - MMP_RS09045 0.69 -0.1
597,626 - MMP_RS09045 0.69 -0.1
597,627 + MMP_RS09045 0.69 +0.1
597,629 - MMP_RS09045 0.69 +0.1
597,629 - MMP_RS09045 0.69 -0.3
597,644 - MMP_RS09045 0.71 -0.5
597,645 + MMP_RS09045 0.71 -0.3
597,662 - MMP_RS09045 0.73 -0.2
597,666 + MMP_RS09045 0.73 +0.1
597,680 - MMP_RS09045 0.75 +0.1
597,681 + MMP_RS09045 0.75 -0.2
597,797 - MMP_RS09045 0.88 -0.1
597,840 - +0.4
597,855 - +0.4
597,855 - +0.1
597,902 - -0.1
597,902 - -0.2
597,903 + -0.2
597,903 + +0.3
597,906 - +0.1
597,920 + -0.4
597,958 - +0.6
597,965 + +0.3
597,965 + +0.1
597,965 + +0.5
597,965 + +0.2
597,966 - +0.1
597,966 - -1.3
597,967 + +0.4
597,969 + +0.1
597,982 + +0.1
598,013 - -0.3
598,014 + +0.4
598,024 - +0.0
598,025 + +0.4
598,411 + -1.0
598,533 + -2.2
598,677 + -0.8
598,689 + -2.2
598,863 + -2.1

Or see this region's nucleotide sequence