Experiment: Formate McCas no stress control 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS07100 and MMP_RS09025 are separated by 219 nucleotides MMP_RS09025 and MMP_RS07105 are separated by 14 nucleotides MMP_RS07105 and MMP_RS07110 are separated by 73 nucleotides
MMP_RS07100: MMP_RS07100 - hypothetical protein, at 1,357,616 to 1,358,683
_RS07100
MMP_RS09025: MMP_RS09025 - hypothetical protein, at 1,358,903 to 1,359,079
_RS09025
MMP_RS07105: MMP_RS07105 - thymidylate synthase, at 1,359,094 to 1,359,732
_RS07105
MMP_RS07110: MMP_RS07110 - amidohydrolase family protein, at 1,359,806 to 1,360,924
_RS07110
Position (kb) 1358
1359
1360 Strain fitness (log2 ratio) -1
0
1 at 1357.914 kb on + strand, within MMP_RS07100 at 1357.955 kb on - strand, within MMP_RS07100 at 1357.992 kb on + strand, within MMP_RS07100 at 1357.994 kb on + strand, within MMP_RS07100 at 1357.994 kb on + strand, within MMP_RS07100 at 1357.996 kb on - strand, within MMP_RS07100 at 1357.999 kb on - strand, within MMP_RS07100 at 1358.061 kb on - strand, within MMP_RS07100 at 1358.105 kb on - strand, within MMP_RS07100 at 1358.177 kb on - strand, within MMP_RS07100 at 1358.211 kb on - strand, within MMP_RS07100 at 1358.212 kb on + strand, within MMP_RS07100 at 1358.212 kb on + strand, within MMP_RS07100 at 1358.213 kb on - strand, within MMP_RS07100 at 1358.224 kb on + strand, within MMP_RS07100 at 1358.357 kb on - strand, within MMP_RS07100 at 1358.385 kb on + strand, within MMP_RS07100 at 1358.429 kb on - strand, within MMP_RS07100 at 1358.429 kb on - strand, within MMP_RS07100 at 1358.430 kb on + strand, within MMP_RS07100 at 1358.446 kb on + strand, within MMP_RS07100 at 1358.446 kb on + strand, within MMP_RS07100 at 1358.520 kb on + strand, within MMP_RS07100 at 1358.570 kb on + strand, within MMP_RS07100 at 1358.590 kb on - strand at 1358.591 kb on + strand at 1358.594 kb on - strand at 1358.594 kb on - strand at 1358.597 kb on + strand at 1358.662 kb on + strand at 1358.682 kb on + strand at 1358.717 kb on + strand at 1358.749 kb on - strand at 1358.749 kb on - strand at 1358.751 kb on - strand at 1358.751 kb on - strand at 1358.751 kb on - strand at 1358.752 kb on + strand at 1358.752 kb on + strand at 1358.754 kb on + strand at 1358.758 kb on - strand at 1358.759 kb on + strand at 1358.763 kb on - strand at 1358.788 kb on - strand at 1358.809 kb on - strand at 1358.867 kb on + strand at 1358.896 kb on + strand at 1359.006 kb on + strand, within MMP_RS09025 at 1359.078 kb on + strand at 1359.086 kb on + strand at 1359.101 kb on + strand at 1359.124 kb on + strand at 1359.813 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 2 remove 1,357,914 + MMP_RS07100 0.28 -0.5 1,357,955 - MMP_RS07100 0.32 +0.0 1,357,992 + MMP_RS07100 0.35 -0.2 1,357,994 + MMP_RS07100 0.35 +0.6 1,357,994 + MMP_RS07100 0.35 +0.1 1,357,996 - MMP_RS07100 0.36 +0.3 1,357,999 - MMP_RS07100 0.36 -0.0 1,358,061 - MMP_RS07100 0.42 +0.8 1,358,105 - MMP_RS07100 0.46 -0.4 1,358,177 - MMP_RS07100 0.53 -0.1 1,358,211 - MMP_RS07100 0.56 -0.1 1,358,212 + MMP_RS07100 0.56 -0.0 1,358,212 + MMP_RS07100 0.56 +0.0 1,358,213 - MMP_RS07100 0.56 +0.1 1,358,224 + MMP_RS07100 0.57 +0.2 1,358,357 - MMP_RS07100 0.69 -0.1 1,358,385 + MMP_RS07100 0.72 +0.1 1,358,429 - MMP_RS07100 0.76 -0.3 1,358,429 - MMP_RS07100 0.76 +0.2 1,358,430 + MMP_RS07100 0.76 +0.5 1,358,446 + MMP_RS07100 0.78 -0.2 1,358,446 + MMP_RS07100 0.78 +0.6 1,358,520 + MMP_RS07100 0.85 +0.4 1,358,570 + MMP_RS07100 0.89 -0.2 1,358,590 - +0.9 1,358,591 + +0.9 1,358,594 - +0.4 1,358,594 - -0.9 1,358,597 + -0.1 1,358,662 + +0.6 1,358,682 + +0.2 1,358,717 + +0.3 1,358,749 - +0.2 1,358,749 - +0.1 1,358,751 - +0.3 1,358,751 - +0.0 1,358,751 - +0.2 1,358,752 + +0.7 1,358,752 + +0.1 1,358,754 + +0.1 1,358,758 - +0.6 1,358,759 + +0.1 1,358,763 - -0.3 1,358,788 - -0.1 1,358,809 - +0.2 1,358,867 + +0.1 1,358,896 + -0.1 1,359,006 + MMP_RS09025 0.58 -0.4 1,359,078 + -0.2 1,359,086 + +0.1 1,359,101 + +0.0 1,359,124 + +0.7 1,359,813 + -0.8
Or see this region's nucleotide sequence