Strain Fitness in Methanococcus maripaludis S2 around MMP_RS04695

Experiment: Formate McCas no stress control 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formate McCas no stress control 2
897,316	-				-2.0
897,360	-				-2.6
897,364	+				-2.0
897,426	+		MMP_RS04685	0.11	-0.7
897,426	+		MMP_RS04685	0.11	-1.3
897,429	+		MMP_RS04685	0.12	-1.6
897,432	+		MMP_RS04685	0.12	-1.8
897,455	-		MMP_RS04685	0.18	-2.2
897,577	+		MMP_RS04685	0.49	-1.6
897,631	-		MMP_RS04685	0.63	-3.3
897,897	-		MMP_RS04690	0.48	-0.8
897,908	-		MMP_RS04690	0.53	+0.4
897,914	-		MMP_RS04690	0.56	-0.3
897,953	+		MMP_RS04690	0.73	-1.0
898,001	-				-0.5
898,001	-				+0.4
898,043	-				-0.0
898,049	-				+0.6
898,049	-				+0.0
898,049	-				-0.0
898,050	+				-0.4
898,050	+				-0.9
898,051	-				+0.2
898,051	-				+0.1
898,051	-				+0.3
898,054	+				+0.1
898,069	-				-0.1
898,070	+				-0.5
898,075	-				+0.3
898,075	-				+0.2
898,079	-				-0.3
898,079	-				-0.0
898,079	-				+0.4
898,080	+				-0.2
898,080	+				+0.5
898,082	-				-0.3
898,098	-				+0.1
898,099	+				-0.1
898,099	+				-0.0
898,129	-		MMP_RS09010	0.17	+0.2
898,130	+		MMP_RS09010	0.18	+0.1
898,130	+		MMP_RS09010	0.18	-0.1
898,130	+		MMP_RS09010	0.18	-0.0
898,139	-		MMP_RS09010	0.23	-0.1
898,139	-		MMP_RS09010	0.23	-0.5
898,140	+		MMP_RS09010	0.24	-0.3
898,140	+		MMP_RS09010	0.24	+0.6
898,165	+		MMP_RS09010	0.40	-0.3
898,237	-		MMP_RS09010	0.85	+0.1
898,679	-		MMP_RS04695	0.38	-0.3
898,998	-		MMP_RS04695	0.70	-0.2
898,999	+		MMP_RS04695	0.70	-0.3
898,999	+		MMP_RS04695	0.70	-0.4
899,028	-		MMP_RS04695	0.73	-0.2
899,029	+		MMP_RS04695	0.73	-0.4
899,066	+		MMP_RS04695	0.76	-0.3
899,067	-		MMP_RS04695	0.76	-0.3
899,068	+		MMP_RS04695	0.77	-0.1
899,068	+		MMP_RS04695	0.77	+0.5
899,085	+		MMP_RS04695	0.78	-0.3
899,236	+				+0.7
899,245	+				-0.6
899,276	-				-0.3
899,355	-				-0.0
899,355	-				+0.7
899,366	-				+0.1
899,366	-				+0.4
899,366	-				-0.1
899,366	-				-0.1
899,367	+				-0.1
899,367	+				-0.2
899,368	-				+0.1
899,368	-				-0.5
899,368	-				+0.1
899,369	+				-0.3
899,375	-				+0.1
899,376	+				-0.4
899,376	+				-0.2
899,376	+				+0.4
899,385	-				+0.2
899,385	-				+0.1
899,385	-				-0.1
899,386	+				+0.4
899,386	+				+0.4
899,418	+				+0.2
899,418	+				+0.2
899,420	-				+0.0
899,558	-		MMP_RS04700	0.30	+0.1
899,559	+		MMP_RS04700	0.30	-0.3
899,564	-		MMP_RS04700	0.31	-0.2
899,565	+		MMP_RS04700	0.31	-0.4
899,571	-		MMP_RS04700	0.32	+0.1
899,576	-		MMP_RS04700	0.33	+0.1
899,581	-		MMP_RS04700	0.34	+0.5
899,582	+		MMP_RS04700	0.34	+0.1
899,693	+		MMP_RS04700	0.53	-0.2
899,778	-		MMP_RS04700	0.68	+0.0
899,779	+		MMP_RS04700	0.68	+0.5
899,799	+		MMP_RS04700	0.72	+1.1
899,799	+		MMP_RS04700	0.72	+0.1
899,804	-		MMP_RS04700	0.73	-0.0
899,805	+		MMP_RS04700	0.73	+0.1
899,820	+		MMP_RS04700	0.75	-0.2
899,824	-		MMP_RS04700	0.76	+0.5
899,825	+		MMP_RS04700	0.76	-0.4
899,865	+		MMP_RS04700	0.83	-2.0
899,865	+		MMP_RS04700	0.83	+0.1
899,912	-				-0.5
899,913	+				-0.4
899,917	-				+0.5
899,917	-				-0.8
899,918	+				+0.4
899,918	+				-0.1
900,074	+				-1.0
900,265	-				-3.2
900,298	-				-1.1
900,299	+				-0.6
900,299	+				-1.6
900,299	+				-2.1
900,299	+				-0.9
900,299	+				-0.3
900,299	+				-1.1