Experiment: Formate McCas no stress control 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02400 and MMP_RS02405 are separated by 127 nucleotides MMP_RS02405 and MMP_RS02410 are separated by 115 nucleotides MMP_RS02410 and MMP_RS02415 are separated by 103 nucleotides
MMP_RS02400: MMP_RS02400 - site-2 protease family protein, at 445,925 to 446,938
_RS02400
MMP_RS02405: MMP_RS02405 - hypothetical protein, at 447,066 to 447,587
_RS02405
MMP_RS02410: MMP_RS02410 - ABC transporter substrate-binding protein, at 447,703 to 448,449
_RS02410
MMP_RS02415: MMP_RS02415 - site-specific integrase, at 448,553 to 449,101
_RS02415
Position (kb) 447
448 Strain fitness (log2 ratio) -1
0
1 at 446.096 kb on - strand, within MMP_RS02400 at 446.106 kb on + strand, within MMP_RS02400 at 446.111 kb on + strand, within MMP_RS02400 at 446.129 kb on + strand, within MMP_RS02400 at 446.129 kb on + strand, within MMP_RS02400 at 446.149 kb on - strand, within MMP_RS02400 at 446.259 kb on + strand, within MMP_RS02400 at 446.272 kb on - strand, within MMP_RS02400 at 446.273 kb on + strand, within MMP_RS02400 at 446.273 kb on + strand, within MMP_RS02400 at 446.276 kb on + strand, within MMP_RS02400 at 446.301 kb on + strand, within MMP_RS02400 at 446.305 kb on - strand, within MMP_RS02400 at 446.305 kb on - strand, within MMP_RS02400 at 446.306 kb on + strand, within MMP_RS02400 at 446.306 kb on + strand, within MMP_RS02400 at 446.351 kb on + strand, within MMP_RS02400 at 446.387 kb on - strand, within MMP_RS02400 at 446.403 kb on + strand, within MMP_RS02400 at 446.411 kb on - strand, within MMP_RS02400 at 446.458 kb on - strand, within MMP_RS02400 at 446.459 kb on + strand, within MMP_RS02400 at 446.460 kb on - strand, within MMP_RS02400 at 446.494 kb on - strand, within MMP_RS02400 at 446.494 kb on - strand, within MMP_RS02400 at 446.553 kb on + strand, within MMP_RS02400 at 446.775 kb on - strand, within MMP_RS02400 at 446.776 kb on + strand, within MMP_RS02400 at 446.824 kb on + strand, within MMP_RS02400 at 446.877 kb on + strand at 446.962 kb on - strand at 446.962 kb on - strand at 446.962 kb on - strand at 446.962 kb on - strand at 446.963 kb on + strand at 446.963 kb on + strand at 446.963 kb on + strand at 446.965 kb on - strand at 446.965 kb on - strand at 446.965 kb on - strand at 446.966 kb on + strand at 446.966 kb on + strand at 446.968 kb on + strand at 446.968 kb on + strand at 446.988 kb on + strand at 447.006 kb on - strand at 447.007 kb on + strand at 447.007 kb on + strand at 447.010 kb on - strand at 447.010 kb on - strand at 447.010 kb on - strand at 447.010 kb on - strand at 447.020 kb on + strand at 447.050 kb on - strand at 447.051 kb on + strand at 447.085 kb on - strand at 447.085 kb on - strand at 447.085 kb on - strand at 447.366 kb on - strand, within MMP_RS02405 at 447.366 kb on - strand, within MMP_RS02405 at 447.367 kb on + strand, within MMP_RS02405 at 447.367 kb on + strand, within MMP_RS02405 at 447.369 kb on + strand, within MMP_RS02405 at 447.415 kb on + strand, within MMP_RS02405 at 447.472 kb on - strand, within MMP_RS02405 at 447.601 kb on - strand at 447.601 kb on - strand at 447.642 kb on + strand at 447.738 kb on + strand at 447.837 kb on - strand, within MMP_RS02410 at 448.088 kb on + strand, within MMP_RS02410 at 448.362 kb on - strand, within MMP_RS02410 at 448.392 kb on - strand at 448.483 kb on - strand at 448.483 kb on - strand at 448.483 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 2 remove 446,096 - MMP_RS02400 0.17 +0.3 446,106 + MMP_RS02400 0.18 +0.0 446,111 + MMP_RS02400 0.18 -0.4 446,129 + MMP_RS02400 0.20 +0.0 446,129 + MMP_RS02400 0.20 -0.3 446,149 - MMP_RS02400 0.22 -0.6 446,259 + MMP_RS02400 0.33 -0.3 446,272 - MMP_RS02400 0.34 +0.1 446,273 + MMP_RS02400 0.34 -0.1 446,273 + MMP_RS02400 0.34 -0.5 446,276 + MMP_RS02400 0.35 -0.2 446,301 + MMP_RS02400 0.37 -0.2 446,305 - MMP_RS02400 0.37 -0.2 446,305 - MMP_RS02400 0.37 +0.2 446,306 + MMP_RS02400 0.38 +0.0 446,306 + MMP_RS02400 0.38 +0.2 446,351 + MMP_RS02400 0.42 +0.1 446,387 - MMP_RS02400 0.46 +0.2 446,403 + MMP_RS02400 0.47 -0.2 446,411 - MMP_RS02400 0.48 -0.1 446,458 - MMP_RS02400 0.53 -0.1 446,459 + MMP_RS02400 0.53 +0.1 446,460 - MMP_RS02400 0.53 +0.2 446,494 - MMP_RS02400 0.56 -0.1 446,494 - MMP_RS02400 0.56 +0.1 446,553 + MMP_RS02400 0.62 -0.2 446,775 - MMP_RS02400 0.84 +0.5 446,776 + MMP_RS02400 0.84 +0.7 446,824 + MMP_RS02400 0.89 -0.2 446,877 + -0.1 446,962 - +0.1 446,962 - -1.1 446,962 - +0.6 446,962 - +0.1 446,963 + -0.2 446,963 + +0.0 446,963 + +0.4 446,965 - -0.0 446,965 - +0.0 446,965 - -0.2 446,966 + +0.8 446,966 + -0.2 446,968 + +0.3 446,968 + -0.0 446,988 + -0.5 447,006 - +0.3 447,007 + +0.3 447,007 + -0.1 447,010 - -0.2 447,010 - -0.3 447,010 - -0.7 447,010 - +0.1 447,020 + +0.3 447,050 - -0.4 447,051 + -0.0 447,085 - -0.3 447,085 - +0.2 447,085 - -0.3 447,366 - MMP_RS02405 0.57 +1.0 447,366 - MMP_RS02405 0.57 +0.4 447,367 + MMP_RS02405 0.58 -0.0 447,367 + MMP_RS02405 0.58 -0.1 447,369 + MMP_RS02405 0.58 +0.2 447,415 + MMP_RS02405 0.67 -0.3 447,472 - MMP_RS02405 0.78 -0.3 447,601 - +0.2 447,601 - +0.2 447,642 + -0.3 447,738 + +0.2 447,837 - MMP_RS02410 0.18 -0.3 448,088 + MMP_RS02410 0.52 +0.4 448,362 - MMP_RS02410 0.88 -0.0 448,392 - +0.2 448,483 - -0.0 448,483 - -0.3 448,483 - -0.1
Or see this region's nucleotide sequence