Experiment: Formate McCas no stress control 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS01860 and MMP_RS01865 are separated by 90 nucleotides MMP_RS01865 and MMP_RS01870 are separated by 126 nucleotides MMP_RS01870 and MMP_RS01875 are separated by 140 nucleotides MMP_RS01875 and MMP_RS01880 are separated by 1 nucleotides
MMP_RS01860: MMP_RS01860 - hypothetical protein, at 343,814 to 344,128
_RS01860
MMP_RS01865: MMP_RS01865 - GPR1/FUN34/YaaH family transporter, at 344,219 to 344,812
_RS01865
MMP_RS01870: MMP_RS01870 - acyl-CoA dehydratase activase, at 344,939 to 345,679
_RS01870
MMP_RS01875: MMP_RS01875 - N-acetyltransferase, at 345,820 to 346,410
_RS01875
MMP_RS01880: MMP_RS01880 - DegT/DnrJ/EryC1/StrS family aminotransferase, at 346,412 to 347,515
_RS01880
Position (kb) 344
345
346 Strain fitness (log2 ratio) -1
0
1
2 at 343.992 kb on + strand, within MMP_RS01860 at 344.004 kb on - strand, within MMP_RS01860 at 344.023 kb on - strand, within MMP_RS01860 at 344.096 kb on - strand, within MMP_RS01860 at 344.099 kb on + strand at 344.103 kb on + strand at 344.115 kb on + strand at 344.128 kb on - strand at 344.182 kb on - strand at 344.182 kb on - strand at 344.182 kb on - strand at 344.183 kb on + strand at 344.184 kb on - strand at 344.184 kb on - strand at 344.185 kb on + strand at 344.186 kb on - strand at 344.187 kb on + strand at 344.187 kb on + strand at 344.388 kb on + strand, within MMP_RS01865 at 344.790 kb on + strand at 344.819 kb on + strand at 344.856 kb on - strand at 344.858 kb on - strand at 344.858 kb on - strand at 344.858 kb on - strand at 344.858 kb on - strand at 344.859 kb on + strand at 344.859 kb on + strand at 344.860 kb on - strand at 344.860 kb on - strand at 344.860 kb on - strand at 344.860 kb on - strand at 344.861 kb on + strand at 344.861 kb on + strand at 344.873 kb on + strand at 344.884 kb on - strand at 344.910 kb on - strand at 344.913 kb on + strand at 344.924 kb on + strand at 345.036 kb on + strand, within MMP_RS01870 at 345.078 kb on + strand, within MMP_RS01870 at 345.139 kb on + strand, within MMP_RS01870 at 345.140 kb on - strand, within MMP_RS01870 at 345.141 kb on + strand, within MMP_RS01870 at 345.289 kb on - strand, within MMP_RS01870 at 345.372 kb on + strand, within MMP_RS01870 at 345.372 kb on + strand, within MMP_RS01870 at 345.485 kb on - strand, within MMP_RS01870 at 345.560 kb on - strand, within MMP_RS01870 at 345.605 kb on + strand, within MMP_RS01870 at 345.614 kb on - strand at 345.671 kb on - strand at 345.729 kb on - strand at 345.735 kb on - strand at 345.739 kb on - strand at 345.739 kb on - strand at 345.740 kb on + strand at 345.743 kb on - strand at 345.756 kb on + strand at 345.757 kb on - strand at 345.774 kb on - strand at 345.774 kb on - strand at 345.774 kb on - strand at 345.775 kb on + strand at 345.775 kb on + strand at 345.783 kb on - strand at 345.789 kb on + strand at 345.816 kb on + strand at 345.826 kb on + strand at 345.829 kb on - strand at 345.883 kb on + strand, within MMP_RS01875 at 345.958 kb on - strand, within MMP_RS01875 at 345.958 kb on - strand, within MMP_RS01875 at 345.959 kb on + strand, within MMP_RS01875 at 345.959 kb on + strand, within MMP_RS01875 at 345.959 kb on + strand, within MMP_RS01875 at 345.960 kb on - strand, within MMP_RS01875 at 345.961 kb on + strand, within MMP_RS01875 at 345.962 kb on - strand, within MMP_RS01875 at 345.962 kb on - strand, within MMP_RS01875 at 345.962 kb on - strand, within MMP_RS01875 at 345.963 kb on + strand, within MMP_RS01875 at 345.963 kb on + strand, within MMP_RS01875 at 345.967 kb on + strand, within MMP_RS01875 at 345.967 kb on + strand, within MMP_RS01875 at 346.016 kb on - strand, within MMP_RS01875 at 346.017 kb on + strand, within MMP_RS01875 at 346.018 kb on - strand, within MMP_RS01875 at 346.019 kb on + strand, within MMP_RS01875 at 346.019 kb on + strand, within MMP_RS01875 at 346.035 kb on + strand, within MMP_RS01875 at 346.067 kb on - strand, within MMP_RS01875 at 346.082 kb on - strand, within MMP_RS01875 at 346.104 kb on - strand, within MMP_RS01875 at 346.167 kb on + strand, within MMP_RS01875 at 346.247 kb on - strand, within MMP_RS01875 at 346.271 kb on - strand, within MMP_RS01875 at 346.272 kb on + strand, within MMP_RS01875 at 346.287 kb on - strand, within MMP_RS01875 at 346.287 kb on - strand, within MMP_RS01875 at 346.288 kb on + strand, within MMP_RS01875 at 346.288 kb on + strand, within MMP_RS01875 at 346.343 kb on + strand, within MMP_RS01875 at 346.350 kb on - strand, within MMP_RS01875 at 346.350 kb on - strand, within MMP_RS01875 at 346.353 kb on - strand at 346.365 kb on - strand at 346.366 kb on + strand at 346.366 kb on + strand at 346.366 kb on + strand at 346.367 kb on - strand at 346.367 kb on - strand at 346.408 kb on - strand at 346.411 kb on - strand at 346.412 kb on + strand at 346.421 kb on + strand at 346.437 kb on - strand at 346.438 kb on + strand at 346.462 kb on + strand at 346.545 kb on - strand, within MMP_RS01880 at 346.645 kb on - strand, within MMP_RS01880 at 346.675 kb on + strand, within MMP_RS01880
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 2 remove 343,992 + MMP_RS01860 0.57 -0.1 344,004 - MMP_RS01860 0.60 -0.0 344,023 - MMP_RS01860 0.66 +0.4 344,096 - MMP_RS01860 0.90 -0.0 344,099 + -0.2 344,103 + +0.1 344,115 + -0.5 344,128 - -0.5 344,182 - +0.0 344,182 - -0.3 344,182 - -0.1 344,183 + -0.1 344,184 - -0.2 344,184 - -0.5 344,185 + -0.3 344,186 - +0.4 344,187 + -0.2 344,187 + +0.3 344,388 + MMP_RS01865 0.28 -0.0 344,790 + -0.8 344,819 + +0.3 344,856 - -0.3 344,858 - -0.1 344,858 - +0.1 344,858 - +0.0 344,858 - +0.2 344,859 + +0.8 344,859 + -0.0 344,860 - +0.2 344,860 - -0.0 344,860 - -0.5 344,860 - +0.1 344,861 + +1.5 344,861 + -0.4 344,873 + +0.0 344,884 - +0.4 344,910 - -0.1 344,913 + +0.0 344,924 + -0.1 345,036 + MMP_RS01870 0.13 +0.3 345,078 + MMP_RS01870 0.19 +0.1 345,139 + MMP_RS01870 0.27 +0.0 345,140 - MMP_RS01870 0.27 -0.7 345,141 + MMP_RS01870 0.27 -0.7 345,289 - MMP_RS01870 0.47 +0.3 345,372 + MMP_RS01870 0.58 +0.1 345,372 + MMP_RS01870 0.58 -0.0 345,485 - MMP_RS01870 0.74 -0.2 345,560 - MMP_RS01870 0.84 +0.2 345,605 + MMP_RS01870 0.90 +0.2 345,614 - +0.2 345,671 - +0.2 345,729 - -0.9 345,735 - -0.2 345,739 - +0.2 345,739 - -0.1 345,740 + +0.2 345,743 - -0.4 345,756 + +0.4 345,757 - +0.4 345,774 - -0.2 345,774 - +0.8 345,774 - +0.4 345,775 + +0.7 345,775 + -0.1 345,783 - +0.7 345,789 + -0.4 345,816 + +0.3 345,826 + +0.3 345,829 - -0.3 345,883 + MMP_RS01875 0.11 +0.2 345,958 - MMP_RS01875 0.23 +0.6 345,958 - MMP_RS01875 0.23 +0.0 345,959 + MMP_RS01875 0.24 -0.5 345,959 + MMP_RS01875 0.24 +0.5 345,959 + MMP_RS01875 0.24 -0.7 345,960 - MMP_RS01875 0.24 +1.2 345,961 + MMP_RS01875 0.24 -0.5 345,962 - MMP_RS01875 0.24 +0.4 345,962 - MMP_RS01875 0.24 +0.1 345,962 - MMP_RS01875 0.24 -0.1 345,963 + MMP_RS01875 0.24 -1.2 345,963 + MMP_RS01875 0.24 +0.7 345,967 + MMP_RS01875 0.25 -1.0 345,967 + MMP_RS01875 0.25 +1.0 346,016 - MMP_RS01875 0.33 +2.0 346,017 + MMP_RS01875 0.33 +0.3 346,018 - MMP_RS01875 0.34 +0.0 346,019 + MMP_RS01875 0.34 +0.2 346,019 + MMP_RS01875 0.34 -0.3 346,035 + MMP_RS01875 0.36 +0.2 346,067 - MMP_RS01875 0.42 -0.1 346,082 - MMP_RS01875 0.44 +1.1 346,104 - MMP_RS01875 0.48 +0.2 346,167 + MMP_RS01875 0.59 -0.2 346,247 - MMP_RS01875 0.72 +0.2 346,271 - MMP_RS01875 0.76 +0.3 346,272 + MMP_RS01875 0.76 +0.8 346,287 - MMP_RS01875 0.79 -0.4 346,287 - MMP_RS01875 0.79 -0.7 346,288 + MMP_RS01875 0.79 -0.1 346,288 + MMP_RS01875 0.79 +0.6 346,343 + MMP_RS01875 0.88 +0.3 346,350 - MMP_RS01875 0.90 +0.4 346,350 - MMP_RS01875 0.90 +0.7 346,353 - +0.5 346,365 - -0.2 346,366 + +0.4 346,366 + +0.2 346,366 + +0.4 346,367 - +1.2 346,367 - +0.2 346,408 - +0.0 346,411 - -0.3 346,412 + +0.5 346,421 + +0.9 346,437 - -0.1 346,438 + +0.3 346,462 + -0.1 346,545 - MMP_RS01880 0.12 -0.9 346,645 - MMP_RS01880 0.21 +0.1 346,675 + MMP_RS01880 0.24 +0.1
Or see this region's nucleotide sequence