Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS14590

Experiment: Gly-Glu 20 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Gly-Glu 20 mM
3,235,182	+				-0.5
3,235,182	+				-1.7
3,235,182	+				-1.4
3,235,182	+				-0.5
3,235,182	+				-2.5
3,235,182	+				+0.8
3,235,182	+				+0.3
3,235,182	+				+0.3
3,235,182	+				+0.4
3,235,182	+				-0.3
3,235,182	+				+0.3
3,235,182	+				+0.2
3,235,182	+				+0.2
3,235,182	+				-0.0
3,235,183	-				-2.5
3,235,183	-				+0.8
3,235,183	-				+0.6
3,235,183	-				-0.2
3,235,183	-				-0.7
3,235,183	-				-0.7
3,235,183	-				-0.4
3,235,183	-				-0.4
3,235,183	-				-1.4
3,235,266	+				-0.6
3,235,266	+				+0.7
3,235,266	+				+1.3
3,235,266	+				+1.3
3,235,266	+				+1.0
3,235,266	+				-0.5
3,235,266	+				+0.4
3,235,266	+				-0.7
3,235,266	+				-0.5
3,235,266	+				-0.1
3,235,266	+				+0.8
3,235,266	+				-0.5
3,235,280	+				+0.3
3,235,281	-				-0.1
3,235,310	+				+0.3
3,235,311	-				+0.4
3,235,311	-				+0.5
3,235,311	-				-0.7
3,235,311	-				+0.6
3,235,311	-				-1.2
3,235,311	-				-0.2
3,235,361	+				+0.5
3,235,361	+				-0.5
3,235,362	-				-0.6
3,235,362	-				+1.8
3,235,362	-				-0.0
3,235,362	-				-0.7
3,235,488	-		LRK54_RS14585	0.21	+1.5
3,235,488	-		LRK54_RS14585	0.21	+0.7
3,235,488	-		LRK54_RS14585	0.21	-0.2
3,235,488	-		LRK54_RS14585	0.21	+0.3
3,235,493	+		LRK54_RS14585	0.22	+0.8
3,235,493	+		LRK54_RS14585	0.22	+1.4
3,235,493	+		LRK54_RS14585	0.22	+0.7
3,235,493	+		LRK54_RS14585	0.22	-1.5
3,235,493	+		LRK54_RS14585	0.22	-0.1
3,235,493	+		LRK54_RS14585	0.22	-1.3
3,235,493	+		LRK54_RS14585	0.22	+0.5
3,235,493	+		LRK54_RS14585	0.22	+0.5
3,235,493	+		LRK54_RS14585	0.22	+0.1
3,235,493	+		LRK54_RS14585	0.22	-0.0
3,235,493	+		LRK54_RS14585	0.22	-0.7
3,235,493	+		LRK54_RS14585	0.22	+0.6
3,235,493	+		LRK54_RS14585	0.22	-0.5
3,235,493	+		LRK54_RS14585	0.22	-1.5
3,235,493	+		LRK54_RS14585	0.22	+0.1
3,235,494	-		LRK54_RS14585	0.22	+0.7
3,235,494	-		LRK54_RS14585	0.22	-0.8
3,235,494	-		LRK54_RS14585	0.22	-0.7
3,235,494	-		LRK54_RS14585	0.22	-0.5
3,235,494	-		LRK54_RS14585	0.22	+0.6
3,235,494	-		LRK54_RS14585	0.22	-0.7
3,235,494	-		LRK54_RS14585	0.22	+0.0
3,235,494	-		LRK54_RS14585	0.22	-0.9
3,235,494	-		LRK54_RS14585	0.22	-0.2
3,235,494	-		LRK54_RS14585	0.22	+0.3
3,235,494	-		LRK54_RS14585	0.22	+0.1
3,235,494	-		LRK54_RS14585	0.22	-0.7
3,235,494	-		LRK54_RS14585	0.22	-1.2
3,235,494	-		LRK54_RS14585	0.22	-0.2
3,235,494	-		LRK54_RS14585	0.22	+1.3
3,235,494	-		LRK54_RS14585	0.22	+0.0
3,235,494	-		LRK54_RS14585	0.22	+0.8
3,235,494	-		LRK54_RS14585	0.22	+1.4
3,235,494	-		LRK54_RS14585	0.22	-0.8
3,235,535	+		LRK54_RS14585	0.27	-0.1
3,235,535	+		LRK54_RS14585	0.27	+1.2
3,235,535	+		LRK54_RS14585	0.27	+1.3
3,235,535	+		LRK54_RS14585	0.27	-1.0
3,235,535	+		LRK54_RS14585	0.27	-1.4
3,235,535	+		LRK54_RS14585	0.27	-1.9
3,235,536	-		LRK54_RS14585	0.27	-0.1
3,235,536	-		LRK54_RS14585	0.27	-1.2
3,235,536	-		LRK54_RS14585	0.27	-0.6
3,235,536	-		LRK54_RS14585	0.27	-0.7
3,235,536	-		LRK54_RS14585	0.27	-0.5
3,235,536	-		LRK54_RS14585	0.27	-1.2
3,235,771	+		LRK54_RS14585	0.55	+0.3
3,235,771	+		LRK54_RS14585	0.55	-1.2
3,235,771	+		LRK54_RS14585	0.55	+0.5
3,235,771	+		LRK54_RS14585	0.55	+0.7
3,235,771	+		LRK54_RS14585	0.55	+1.3
3,235,772	-		LRK54_RS14585	0.55	+0.6
3,235,772	-		LRK54_RS14585	0.55	+0.2
3,235,772	-		LRK54_RS14585	0.55	+0.8
3,235,772	-		LRK54_RS14585	0.55	-1.0
3,235,772	-		LRK54_RS14585	0.55	+0.8
3,235,928	+		LRK54_RS14585	0.74	+0.2
3,235,928	+		LRK54_RS14585	0.74	-0.2
3,235,929	-		LRK54_RS14585	0.74	+0.1
3,235,929	-		LRK54_RS14585	0.74	+1.3
3,236,177	+				-0.6
3,236,177	+				-0.4
3,236,177	+				+0.7
3,236,178	-				+1.8
3,236,178	-				-0.1
3,236,178	-				-0.9
3,236,394	-		LRK54_RS14590	0.39	-1.6
3,236,522	+		LRK54_RS14590	0.62	-1.0
3,236,522	+		LRK54_RS14590	0.62	-0.7
3,236,522	+		LRK54_RS14590	0.62	+0.3
3,236,522	+		LRK54_RS14590	0.62	-1.9
3,236,522	+		LRK54_RS14590	0.62	-0.2
3,236,523	-		LRK54_RS14590	0.63	-2.6
3,236,523	-		LRK54_RS14590	0.63	-2.9
3,236,523	-		LRK54_RS14590	0.63	-3.5
3,236,523	-		LRK54_RS14590	0.63	+0.4
3,236,528	+		LRK54_RS14590	0.63	-1.6
3,236,528	+		LRK54_RS14590	0.63	-1.6
3,236,528	+		LRK54_RS14590	0.63	-1.0
3,236,528	+		LRK54_RS14590	0.63	-0.2
3,236,528	+		LRK54_RS14590	0.63	-1.7
3,236,528	+		LRK54_RS14590	0.63	-2.5
3,236,528	+		LRK54_RS14590	0.63	-0.7
3,236,529	-		LRK54_RS14590	0.64	-1.0
3,236,529	-		LRK54_RS14590	0.64	-2.1
3,236,529	-		LRK54_RS14590	0.64	-1.8
3,236,529	-		LRK54_RS14590	0.64	+0.3
3,236,529	-		LRK54_RS14590	0.64	-1.0
3,236,529	-		LRK54_RS14590	0.64	-1.2
3,236,529	-		LRK54_RS14590	0.64	-1.2
3,236,529	-		LRK54_RS14590	0.64	-1.7
3,236,552	+		LRK54_RS14590	0.68	-1.7
3,236,552	+		LRK54_RS14590	0.68	+0.3
3,236,552	+		LRK54_RS14590	0.68	-2.9
3,236,552	+		LRK54_RS14590	0.68	+0.3
3,236,552	+		LRK54_RS14590	0.68	-1.3
3,236,552	+		LRK54_RS14590	0.68	-0.9
3,236,552	+		LRK54_RS14590	0.68	+0.3
3,236,553	-		LRK54_RS14590	0.68	-0.7
3,236,553	-		LRK54_RS14590	0.68	+0.3
3,236,553	-		LRK54_RS14590	0.68	-0.2
3,236,553	-		LRK54_RS14590	0.68	-0.7
3,236,553	-		LRK54_RS14590	0.68	-0.5
3,236,553	-		LRK54_RS14590	0.68	-1.7
3,236,553	-		LRK54_RS14590	0.68	-2.0
3,236,553	-		LRK54_RS14590	0.68	-2.4
3,236,553	-		LRK54_RS14590	0.68	-2.3
3,236,553	-		LRK54_RS14590	0.68	-1.5
3,236,553	-		LRK54_RS14590	0.68	-1.7
3,236,553	-		LRK54_RS14590	0.68	-3.5
3,236,553	-		LRK54_RS14590	0.68	-2.6
3,236,555	+		LRK54_RS14590	0.68	+0.3
3,236,555	+		LRK54_RS14590	0.68	-1.2
3,236,555	+		LRK54_RS14590	0.68	-2.4
3,236,555	+		LRK54_RS14590	0.68	-2.9
3,236,555	+		LRK54_RS14590	0.68	+0.8
3,236,555	+		LRK54_RS14590	0.68	-2.9
3,236,556	-		LRK54_RS14590	0.68	-1.3
3,236,556	-		LRK54_RS14590	0.68	-1.7
3,236,556	-		LRK54_RS14590	0.68	-1.2
3,236,556	-		LRK54_RS14590	0.68	-0.7
3,236,556	-		LRK54_RS14590	0.68	+0.3
3,236,556	-		LRK54_RS14590	0.68	-2.0
3,236,556	-		LRK54_RS14590	0.68	-2.0
3,236,556	-		LRK54_RS14590	0.68	-2.1
3,236,556	-		LRK54_RS14590	0.68	-2.1
3,236,603	+		LRK54_RS14590	0.77	-1.6
3,236,696	+				-0.7
3,236,696	+				-2.4
3,236,696	+				-0.2
3,236,696	+				-1.2
3,236,696	+				-1.0
3,236,696	+				-1.2
3,236,696	+				-1.6
3,236,696	+				-1.9
3,236,696	+				+1.8
3,236,696	+				-1.3
3,236,696	+				-1.0
3,236,697	-				-2.7
3,236,697	-				-3.8
3,236,697	-				-1.0
3,236,697	-				-1.0
3,236,697	-				-2.9
3,236,697	-				-0.7
3,236,697	-				-1.3
3,236,697	-				+0.3
3,236,697	-				-1.3
3,236,697	-				+0.8
3,236,697	-				-1.3
3,236,697	-				-0.5
3,236,697	-				-0.2
3,236,778	+				+0.7
3,236,778	+				+0.1
3,236,778	+				+0.5
3,236,778	+				+1.8
3,236,778	+				+0.5
3,236,779	-				-0.2
3,236,919	+		LRK54_RS14595	0.19	+0.1
3,236,919	+		LRK54_RS14595	0.19	-0.6
3,236,919	+		LRK54_RS14595	0.19	+1.7
3,236,919	+		LRK54_RS14595	0.19	+0.3
3,236,919	+		LRK54_RS14595	0.19	+1.8
3,236,919	+		LRK54_RS14595	0.19	+0.7
3,236,920	-		LRK54_RS14595	0.19	+1.1
3,236,920	-		LRK54_RS14595	0.19	-0.9
3,236,920	-		LRK54_RS14595	0.19	-0.3
3,236,920	-		LRK54_RS14595	0.19	+1.3
3,237,133	+		LRK54_RS14595	0.59	+0.4
3,237,134	-		LRK54_RS14595	0.59	-1.2
3,237,134	-		LRK54_RS14595	0.59	+1.2
3,237,354	+				-0.2
3,237,354	+				-0.2
3,237,354	+				+0.7
3,237,354	+				+3.4
3,237,355	-				-0.7
3,237,355	-				+0.5
3,237,355	-				-1.2
3,237,355	-				-1.5
3,237,362	+				+0.1
3,237,384	+				-0.7
3,237,384	+				+1.8
3,237,384	+				-0.2
3,237,384	+				-1.1
3,237,384	+				+0.6
3,237,384	+				-1.1
3,237,385	-				+0.9
3,237,385	-				+1.5
3,237,385	-				+0.5
3,237,385	-				-0.2
3,237,385	-				-0.7
3,237,385	-				-0.8
3,237,385	-				-0.5
3,237,477	+				+0.4
3,237,477	+				+0.0
3,237,477	+				-0.6
3,237,477	+				+0.8
3,237,477	+				-0.6
3,237,477	+				-0.2
3,237,477	+				+0.8
3,237,477	+				-0.2
3,237,478	-				+1.3
3,237,478	-				-1.0
3,237,478	-				+0.3
3,237,478	-				-0.6
3,237,478	-				-0.3
3,237,478	-				-0.2
3,237,561	+				+0.4
3,237,561	+				+0.0
3,237,561	+				+0.3
3,237,561	+				-0.1
3,237,561	+				-0.7
3,237,561	+				+0.3
3,237,562	-				+1.1
3,237,562	-				-0.3
3,237,562	-				-0.0
3,237,562	-				+0.7
3,237,562	-				+2.0
3,237,562	-				+0.0
3,237,562	-				+0.3