Experiment: Survival; Treatment=FW104 (pH 5); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_19690 and IAI47_19695 are separated by 576 nucleotides IAI47_19695 and IAI47_19700 are separated by 39 nucleotides
IAI47_19690: IAI47_19690 - hypothetical protein, at 166,249 to 166,497
_19690
IAI47_19695: IAI47_19695 - GNAT family N-acetyltransferase, at 167,074 to 167,616
_19695
IAI47_19700: IAI47_19700 - EAL domain-containing protein, at 167,656 to 168,828
_19700
Position (kb) 167
168 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 166.187 kb on + strand at 166.187 kb on + strand at 166.187 kb on + strand at 166.187 kb on + strand at 166.188 kb on - strand at 166.188 kb on - strand at 166.193 kb on - strand at 166.193 kb on - strand at 166.250 kb on + strand at 166.250 kb on + strand at 166.250 kb on + strand at 166.251 kb on - strand at 166.384 kb on - strand, within IAI47_19690 at 166.463 kb on - strand, within IAI47_19690 at 166.480 kb on + strand at 166.480 kb on + strand at 166.480 kb on + strand at 166.481 kb on - strand at 166.481 kb on - strand at 166.481 kb on - strand at 166.482 kb on + strand at 166.482 kb on + strand at 166.482 kb on + strand at 166.482 kb on + strand at 166.482 kb on + strand at 166.482 kb on + strand at 166.483 kb on - strand at 166.483 kb on - strand at 166.483 kb on - strand at 166.484 kb on + strand at 166.484 kb on + strand at 166.485 kb on - strand at 166.485 kb on - strand at 166.485 kb on - strand at 166.485 kb on - strand at 166.568 kb on + strand at 166.568 kb on + strand at 166.568 kb on + strand at 166.569 kb on - strand at 166.569 kb on - strand at 166.570 kb on + strand at 166.570 kb on + strand at 166.570 kb on + strand at 166.570 kb on + strand at 166.570 kb on + strand at 166.570 kb on + strand at 166.570 kb on + strand at 166.570 kb on + strand at 166.571 kb on - strand at 166.571 kb on - strand at 166.571 kb on - strand at 166.571 kb on - strand at 166.571 kb on - strand at 166.571 kb on - strand at 166.571 kb on - strand at 166.571 kb on - strand at 166.604 kb on + strand at 166.605 kb on - strand at 166.639 kb on + strand at 166.639 kb on + strand at 166.639 kb on + strand at 166.640 kb on - strand at 166.643 kb on + strand at 166.644 kb on - strand at 166.733 kb on - strand at 166.733 kb on - strand at 166.735 kb on + strand at 166.736 kb on - strand at 166.748 kb on - strand at 166.881 kb on + strand at 166.882 kb on - strand at 166.882 kb on - strand at 166.882 kb on - strand at 166.882 kb on - strand at 166.882 kb on - strand at 166.884 kb on + strand at 166.907 kb on + strand at 166.907 kb on + strand at 166.907 kb on + strand at 166.927 kb on + strand at 166.927 kb on + strand at 166.927 kb on + strand at 166.927 kb on + strand at 166.928 kb on - strand at 166.980 kb on + strand at 166.980 kb on + strand at 166.980 kb on + strand at 166.980 kb on + strand at 166.980 kb on + strand at 166.980 kb on + strand at 166.980 kb on + strand at 166.980 kb on + strand at 166.981 kb on - strand at 166.981 kb on - strand at 166.981 kb on - strand at 166.981 kb on - strand at 167.005 kb on + strand at 167.005 kb on + strand at 167.006 kb on - strand at 167.131 kb on + strand, within IAI47_19695 at 167.131 kb on + strand, within IAI47_19695 at 167.131 kb on + strand, within IAI47_19695 at 167.132 kb on - strand, within IAI47_19695 at 167.157 kb on + strand, within IAI47_19695 at 167.157 kb on + strand, within IAI47_19695 at 167.181 kb on + strand, within IAI47_19695 at 167.216 kb on + strand, within IAI47_19695 at 167.253 kb on + strand, within IAI47_19695 at 167.285 kb on + strand, within IAI47_19695 at 167.285 kb on + strand, within IAI47_19695 at 167.285 kb on + strand, within IAI47_19695 at 167.335 kb on - strand, within IAI47_19695 at 167.335 kb on - strand, within IAI47_19695 at 167.410 kb on + strand, within IAI47_19695 at 167.411 kb on - strand, within IAI47_19695 at 167.418 kb on + strand, within IAI47_19695 at 167.418 kb on + strand, within IAI47_19695 at 167.419 kb on - strand, within IAI47_19695 at 167.419 kb on - strand, within IAI47_19695 at 167.426 kb on + strand, within IAI47_19695 at 167.426 kb on + strand, within IAI47_19695 at 167.426 kb on + strand, within IAI47_19695 at 167.509 kb on - strand, within IAI47_19695 at 167.509 kb on - strand, within IAI47_19695 at 167.521 kb on + strand, within IAI47_19695 at 167.521 kb on + strand, within IAI47_19695 at 167.521 kb on + strand, within IAI47_19695 at 167.521 kb on + strand, within IAI47_19695 at 167.521 kb on + strand, within IAI47_19695 at 167.521 kb on + strand, within IAI47_19695 at 167.521 kb on + strand, within IAI47_19695 at 167.522 kb on - strand, within IAI47_19695 at 167.522 kb on - strand, within IAI47_19695 at 167.522 kb on - strand, within IAI47_19695 at 167.522 kb on - strand, within IAI47_19695 at 167.522 kb on - strand, within IAI47_19695 at 167.522 kb on - strand, within IAI47_19695 at 167.522 kb on - strand, within IAI47_19695 at 167.556 kb on + strand, within IAI47_19695 at 167.557 kb on - strand, within IAI47_19695 at 167.598 kb on + strand at 167.599 kb on - strand at 167.599 kb on - strand at 167.599 kb on - strand at 167.614 kb on + strand at 167.614 kb on + strand at 167.614 kb on + strand at 167.614 kb on + strand at 167.614 kb on + strand at 167.615 kb on - strand at 167.615 kb on - strand at 167.615 kb on - strand at 167.641 kb on - strand at 167.641 kb on - strand at 167.657 kb on + strand at 167.658 kb on - strand at 167.658 kb on - strand at 167.687 kb on - strand at 167.714 kb on - strand at 167.714 kb on - strand at 167.746 kb on - strand at 167.779 kb on + strand, within IAI47_19700 at 167.780 kb on - strand, within IAI47_19700 at 167.780 kb on - strand, within IAI47_19700 at 167.780 kb on - strand, within IAI47_19700 at 167.780 kb on - strand, within IAI47_19700 at 167.790 kb on - strand, within IAI47_19700 at 167.790 kb on - strand, within IAI47_19700 at 167.790 kb on - strand, within IAI47_19700 at 167.812 kb on + strand, within IAI47_19700 at 167.813 kb on - strand, within IAI47_19700 at 167.858 kb on - strand, within IAI47_19700 at 167.867 kb on + strand, within IAI47_19700 at 167.867 kb on + strand, within IAI47_19700 at 167.868 kb on - strand, within IAI47_19700 at 167.868 kb on - strand, within IAI47_19700 at 167.868 kb on - strand, within IAI47_19700 at 167.868 kb on - strand, within IAI47_19700 at 167.868 kb on - strand, within IAI47_19700 at 167.868 kb on - strand, within IAI47_19700 at 167.868 kb on - strand, within IAI47_19700 at 167.873 kb on + strand, within IAI47_19700 at 167.873 kb on + strand, within IAI47_19700 at 167.874 kb on - strand, within IAI47_19700 at 167.874 kb on - strand, within IAI47_19700 at 167.874 kb on - strand, within IAI47_19700 at 167.874 kb on - strand, within IAI47_19700 at 167.883 kb on + strand, within IAI47_19700 at 167.884 kb on - strand, within IAI47_19700 at 167.955 kb on + strand, within IAI47_19700 at 167.987 kb on + strand, within IAI47_19700 at 167.987 kb on + strand, within IAI47_19700 at 167.988 kb on - strand, within IAI47_19700 at 167.988 kb on - strand, within IAI47_19700 at 167.988 kb on - strand, within IAI47_19700 at 167.998 kb on + strand, within IAI47_19700 at 167.999 kb on - strand, within IAI47_19700 at 167.999 kb on - strand, within IAI47_19700 at 167.999 kb on - strand, within IAI47_19700 at 167.999 kb on - strand, within IAI47_19700 at 168.116 kb on + strand, within IAI47_19700 at 168.117 kb on - strand, within IAI47_19700 at 168.129 kb on - strand, within IAI47_19700 at 168.129 kb on - strand, within IAI47_19700 at 168.129 kb on - strand, within IAI47_19700 at 168.199 kb on - strand, within IAI47_19700 at 168.199 kb on - strand, within IAI47_19700 at 168.199 kb on - strand, within IAI47_19700 at 168.199 kb on - strand, within IAI47_19700 at 168.199 kb on - strand, within IAI47_19700 at 168.223 kb on + strand, within IAI47_19700 at 168.224 kb on - strand, within IAI47_19700 at 168.291 kb on + strand, within IAI47_19700 at 168.292 kb on - strand, within IAI47_19700 at 168.298 kb on - strand, within IAI47_19700 at 168.307 kb on + strand, within IAI47_19700 at 168.308 kb on - strand, within IAI47_19700 at 168.317 kb on - strand, within IAI47_19700 at 168.336 kb on - strand, within IAI47_19700 at 168.367 kb on - strand, within IAI47_19700 at 168.367 kb on - strand, within IAI47_19700 at 168.376 kb on - strand, within IAI47_19700 at 168.409 kb on + strand, within IAI47_19700 at 168.409 kb on + strand, within IAI47_19700 at 168.409 kb on + strand, within IAI47_19700 at 168.410 kb on - strand, within IAI47_19700 at 168.410 kb on - strand, within IAI47_19700 at 168.410 kb on - strand, within IAI47_19700 at 168.410 kb on - strand, within IAI47_19700 at 168.410 kb on - strand, within IAI47_19700 at 168.410 kb on - strand, within IAI47_19700 at 168.410 kb on - strand, within IAI47_19700 at 168.410 kb on - strand, within IAI47_19700 at 168.421 kb on + strand, within IAI47_19700 at 168.421 kb on + strand, within IAI47_19700 at 168.421 kb on + strand, within IAI47_19700 at 168.422 kb on - strand, within IAI47_19700 at 168.422 kb on - strand, within IAI47_19700 at 168.451 kb on + strand, within IAI47_19700 at 168.452 kb on - strand, within IAI47_19700
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=FW104 (pH 5); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 remove 166,187 + +1.0 166,187 + -2.6 166,187 + +2.7 166,187 + -2.0 166,188 - +2.8 166,188 - +1.2 166,193 - +0.3 166,193 - +1.7 166,250 + +1.4 166,250 + +1.6 166,250 + +0.8 166,251 - +0.8 166,384 - IAI47_19690 0.54 +2.3 166,463 - IAI47_19690 0.86 +4.1 166,480 + +2.8 166,480 + -2.8 166,480 + -0.2 166,481 - +0.9 166,481 - -0.2 166,481 - -2.0 166,482 + -3.0 166,482 + +2.4 166,482 + +0.3 166,482 + -0.6 166,482 + +0.9 166,482 + -0.0 166,483 - +2.2 166,483 - +1.3 166,483 - -1.0 166,484 + -1.4 166,484 + +2.1 166,485 - +1.5 166,485 - +0.8 166,485 - +0.7 166,485 - +0.2 166,568 + -1.2 166,568 + -1.7 166,568 + -1.6 166,569 - +1.8 166,569 - +0.0 166,570 + +0.1 166,570 + -0.6 166,570 + +0.5 166,570 + +0.6 166,570 + -1.7 166,570 + +1.8 166,570 + +0.2 166,570 + +1.0 166,571 - -1.2 166,571 - +1.2 166,571 - +2.1 166,571 - -0.4 166,571 - +2.8 166,571 - -1.6 166,571 - +0.8 166,571 - +1.2 166,604 + +0.4 166,605 - -0.6 166,639 + +0.7 166,639 + -2.5 166,639 + -1.0 166,640 - +1.6 166,643 + +0.5 166,644 - +1.3 166,733 - +0.6 166,733 - +1.4 166,735 + +0.3 166,736 - +0.5 166,748 - +1.2 166,881 + +0.1 166,882 - -3.0 166,882 - -0.2 166,882 - +0.5 166,882 - +0.5 166,882 - +0.5 166,884 + +1.0 166,907 + -0.2 166,907 + +2.0 166,907 + +1.0 166,927 + +1.0 166,927 + +0.5 166,927 + +2.0 166,927 + -2.5 166,928 - +1.6 166,980 + -0.4 166,980 + +1.6 166,980 + +0.4 166,980 + +1.2 166,980 + +0.5 166,980 + +0.5 166,980 + +1.2 166,980 + -0.4 166,981 - +0.8 166,981 - +0.4 166,981 - +1.5 166,981 - +0.4 167,005 + -0.3 167,005 + +0.9 167,006 - -0.8 167,131 + IAI47_19695 0.10 -0.6 167,131 + IAI47_19695 0.10 -0.8 167,131 + IAI47_19695 0.10 -1.7 167,132 - IAI47_19695 0.11 +0.8 167,157 + IAI47_19695 0.15 +2.9 167,157 + IAI47_19695 0.15 +1.2 167,181 + IAI47_19695 0.20 +1.0 167,216 + IAI47_19695 0.26 +1.4 167,253 + IAI47_19695 0.33 +0.2 167,285 + IAI47_19695 0.39 +0.4 167,285 + IAI47_19695 0.39 +0.5 167,285 + IAI47_19695 0.39 +0.2 167,335 - IAI47_19695 0.48 +0.4 167,335 - IAI47_19695 0.48 +2.5 167,410 + IAI47_19695 0.62 -1.9 167,411 - IAI47_19695 0.62 +0.8 167,418 + IAI47_19695 0.63 +0.8 167,418 + IAI47_19695 0.63 -1.6 167,419 - IAI47_19695 0.64 -0.1 167,419 - IAI47_19695 0.64 +2.2 167,426 + IAI47_19695 0.65 +2.0 167,426 + IAI47_19695 0.65 +0.0 167,426 + IAI47_19695 0.65 +1.8 167,509 - IAI47_19695 0.80 -0.8 167,509 - IAI47_19695 0.80 +0.4 167,521 + IAI47_19695 0.82 +0.8 167,521 + IAI47_19695 0.82 +1.9 167,521 + IAI47_19695 0.82 -0.7 167,521 + IAI47_19695 0.82 +0.2 167,521 + IAI47_19695 0.82 -2.1 167,521 + IAI47_19695 0.82 +0.2 167,521 + IAI47_19695 0.82 -1.8 167,522 - IAI47_19695 0.83 -0.4 167,522 - IAI47_19695 0.83 +0.3 167,522 - IAI47_19695 0.83 -2.6 167,522 - IAI47_19695 0.83 -1.7 167,522 - IAI47_19695 0.83 -1.7 167,522 - IAI47_19695 0.83 -1.0 167,522 - IAI47_19695 0.83 +0.9 167,556 + IAI47_19695 0.89 +0.7 167,557 - IAI47_19695 0.89 -0.2 167,598 + +3.4 167,599 - +0.2 167,599 - +0.0 167,599 - -1.2 167,614 + -2.0 167,614 + +0.2 167,614 + -2.9 167,614 + +0.6 167,614 + -1.1 167,615 - -0.8 167,615 - +1.5 167,615 - +0.5 167,641 - +0.8 167,641 - -1.4 167,657 + +0.8 167,658 - -2.0 167,658 - -1.4 167,687 - +0.8 167,714 - +4.4 167,714 - -0.6 167,746 - +0.6 167,779 + IAI47_19700 0.10 -0.2 167,780 - IAI47_19700 0.11 -0.0 167,780 - IAI47_19700 0.11 +2.0 167,780 - IAI47_19700 0.11 +0.4 167,780 - IAI47_19700 0.11 -2.0 167,790 - IAI47_19700 0.11 +1.0 167,790 - IAI47_19700 0.11 +0.8 167,790 - IAI47_19700 0.11 -0.3 167,812 + IAI47_19700 0.13 +1.0 167,813 - IAI47_19700 0.13 +0.8 167,858 - IAI47_19700 0.17 -0.6 167,867 + IAI47_19700 0.18 -1.9 167,867 + IAI47_19700 0.18 +1.4 167,868 - IAI47_19700 0.18 -1.2 167,868 - IAI47_19700 0.18 +2.4 167,868 - IAI47_19700 0.18 +2.7 167,868 - IAI47_19700 0.18 +0.5 167,868 - IAI47_19700 0.18 +4.1 167,868 - IAI47_19700 0.18 +0.5 167,868 - IAI47_19700 0.18 +1.4 167,873 + IAI47_19700 0.18 -0.2 167,873 + IAI47_19700 0.18 -1.6 167,874 - IAI47_19700 0.19 +2.0 167,874 - IAI47_19700 0.19 +3.1 167,874 - IAI47_19700 0.19 -1.7 167,874 - IAI47_19700 0.19 -0.1 167,883 + IAI47_19700 0.19 +0.3 167,884 - IAI47_19700 0.19 +0.3 167,955 + IAI47_19700 0.25 +0.6 167,987 + IAI47_19700 0.28 +1.4 167,987 + IAI47_19700 0.28 -0.7 167,988 - IAI47_19700 0.28 -1.6 167,988 - IAI47_19700 0.28 -2.1 167,988 - IAI47_19700 0.28 +1.0 167,998 + IAI47_19700 0.29 +1.1 167,999 - IAI47_19700 0.29 -0.3 167,999 - IAI47_19700 0.29 +1.5 167,999 - IAI47_19700 0.29 -1.4 167,999 - IAI47_19700 0.29 +0.6 168,116 + IAI47_19700 0.39 -0.8 168,117 - IAI47_19700 0.39 +0.4 168,129 - IAI47_19700 0.40 +1.0 168,129 - IAI47_19700 0.40 +1.4 168,129 - IAI47_19700 0.40 +0.1 168,199 - IAI47_19700 0.46 -1.9 168,199 - IAI47_19700 0.46 -0.9 168,199 - IAI47_19700 0.46 +0.7 168,199 - IAI47_19700 0.46 +2.8 168,199 - IAI47_19700 0.46 +1.0 168,223 + IAI47_19700 0.48 -2.0 168,224 - IAI47_19700 0.48 -1.6 168,291 + IAI47_19700 0.54 -1.8 168,292 - IAI47_19700 0.54 -1.2 168,298 - IAI47_19700 0.55 +1.5 168,307 + IAI47_19700 0.55 +1.3 168,308 - IAI47_19700 0.56 -0.3 168,317 - IAI47_19700 0.56 -1.8 168,336 - IAI47_19700 0.58 -1.9 168,367 - IAI47_19700 0.61 +2.2 168,367 - IAI47_19700 0.61 +0.2 168,376 - IAI47_19700 0.61 -0.6 168,409 + IAI47_19700 0.64 -0.2 168,409 + IAI47_19700 0.64 -0.2 168,409 + IAI47_19700 0.64 -0.2 168,410 - IAI47_19700 0.64 +1.8 168,410 - IAI47_19700 0.64 -0.8 168,410 - IAI47_19700 0.64 +0.4 168,410 - IAI47_19700 0.64 -0.1 168,410 - IAI47_19700 0.64 -0.6 168,410 - IAI47_19700 0.64 +0.4 168,410 - IAI47_19700 0.64 +0.8 168,410 - IAI47_19700 0.64 +2.0 168,421 + IAI47_19700 0.65 -2.7 168,421 + IAI47_19700 0.65 +0.2 168,421 + IAI47_19700 0.65 +1.6 168,422 - IAI47_19700 0.65 +3.0 168,422 - IAI47_19700 0.65 -0.9 168,451 + IAI47_19700 0.68 +0.3 168,452 - IAI47_19700 0.68 +1.2
Or see this region's nucleotide sequence