Strain Fitness in Pantoea sp. MT58 around IAI47_12695

Experiment: Survival; Treatment=FW104 (pH 5); TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW104 (pH 5); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
2,670,527	+		IAI47_12690	0.60	-2.6
2,670,539	-		IAI47_12690	0.60	-0.2
2,670,539	-		IAI47_12690	0.60	+1.2
2,670,579	+		IAI47_12690	0.62	+1.5
2,670,580	-		IAI47_12690	0.62	-0.2
2,670,580	-		IAI47_12690	0.62	-1.0
2,670,590	+		IAI47_12690	0.63	+0.2
2,670,590	+		IAI47_12690	0.63	-1.2
2,670,590	+		IAI47_12690	0.63	+0.5
2,670,590	+		IAI47_12690	0.63	+1.2
2,670,590	+		IAI47_12690	0.63	+2.1
2,670,591	-		IAI47_12690	0.63	+0.2
2,670,593	+		IAI47_12690	0.63	+1.8
2,670,593	+		IAI47_12690	0.63	+0.8
2,670,594	-		IAI47_12690	0.63	-1.6
2,670,594	-		IAI47_12690	0.63	+0.1
2,670,599	-		IAI47_12690	0.63	+0.0
2,670,686	+		IAI47_12690	0.67	-0.1
2,670,776	+		IAI47_12690	0.71	+3.0
2,670,933	-		IAI47_12690	0.79	+0.8
2,670,933	-		IAI47_12690	0.79	-0.2
2,671,070	+		IAI47_12690	0.85	-1.8
2,671,071	-		IAI47_12690	0.85	+0.2
2,671,071	-		IAI47_12690	0.85	-0.2
2,671,153	-		IAI47_12690	0.89	+0.2
2,671,162	+		IAI47_12690	0.90	-1.0
2,671,162	+		IAI47_12690	0.90	+0.8
2,671,163	-		IAI47_12690	0.90	-1.3
2,671,163	-		IAI47_12690	0.90	-1.3
2,671,181	-				+0.3
2,671,221	+				+1.5
2,671,246	+				+2.2
2,671,246	+				-0.5
2,671,246	+				-1.9
2,671,246	+				-0.2
2,671,246	+				+1.6
2,671,247	-				-1.6
2,671,270	+				+3.2
2,671,271	-				+1.5
2,671,379	+				-0.1
2,671,418	+				+2.0
2,671,418	+				-0.8
2,671,419	-				-0.5
2,671,419	-				+3.4
2,671,419	-				-0.6
2,671,419	-				+0.1
2,671,420	+				-2.2
2,671,420	+				+2.0
2,671,421	-				-1.7
2,671,421	-				+5.6
2,671,436	+				+0.7
2,671,436	+				+0.6
2,671,436	+				-0.5
2,671,436	+				-0.2
2,671,436	+				+0.2
2,671,436	+				+2.7
2,671,436	+				+0.6
2,671,436	+				-1.2
2,671,436	+				-0.6
2,671,436	+				+0.8
2,671,436	+				-1.0
2,671,436	+				+0.8
2,671,437	+				-2.2
2,671,437	-				-1.5
2,671,437	-				+0.7
2,671,437	-				+0.4
2,671,437	-				+0.2
2,671,437	-				-1.8
2,671,437	-				-2.9
2,671,437	-				+0.1
2,671,437	-				+1.4
2,671,437	-				+1.4
2,671,437	-				-1.9
2,671,437	-				+1.2
2,671,443	+				-3.3
2,671,449	+				+0.8
2,671,449	+				-1.3
2,671,449	+				+1.1
2,671,449	+				-0.5
2,671,449	+				+0.4
2,671,450	-				-1.0
2,671,509	+				-0.2
2,671,509	+				+1.9
2,671,509	+				-1.9
2,671,509	+				+0.1
2,671,509	+				-0.2
2,671,510	-				-2.4
2,671,510	-				-0.1
2,671,510	-				+0.5
2,671,513	+				-2.8
2,671,513	+				-2.3
2,671,513	+				+1.5
2,671,513	+				-0.8
2,671,513	+				+0.6
2,671,514	-				+1.8
2,671,514	-				+0.7
2,671,514	-				-0.2
2,671,514	-				-0.8
2,671,548	+				+2.2
2,671,548	+				+1.1
2,671,597	+				+0.7
2,671,597	+				+2.7
2,671,597	+				-0.9
2,671,598	-				+1.6
2,671,598	-				+1.8
2,671,598	-				+1.0
2,671,624	+		IAI47_12695	0.12	+0.5
2,671,624	+		IAI47_12695	0.12	+1.0
2,671,624	+		IAI47_12695	0.12	+1.6
2,671,624	+		IAI47_12695	0.12	+0.2
2,671,625	-		IAI47_12695	0.12	+0.4
2,671,625	-		IAI47_12695	0.12	+0.9
2,671,627	+		IAI47_12695	0.12	-0.1
2,671,780	+		IAI47_12695	0.26	+0.2
2,671,792	-		IAI47_12695	0.27	-0.8
2,671,792	-		IAI47_12695	0.27	-1.2
2,671,792	-		IAI47_12695	0.27	-2.9
2,671,792	-		IAI47_12695	0.27	+0.8
2,671,807	-		IAI47_12695	0.29	-2.3
2,671,807	-		IAI47_12695	0.29	-0.1
2,671,807	-		IAI47_12695	0.29	+0.1
2,671,897	+		IAI47_12695	0.37	-1.3
2,671,897	+		IAI47_12695	0.37	+1.7
2,671,897	+		IAI47_12695	0.37	-2.5
2,671,897	+		IAI47_12695	0.37	+0.1
2,671,898	-		IAI47_12695	0.37	-1.1
2,671,898	-		IAI47_12695	0.37	+2.1
2,671,898	-		IAI47_12695	0.37	-2.4
2,671,898	-		IAI47_12695	0.37	-0.6
2,671,906	+		IAI47_12695	0.37	+1.4
2,671,906	+		IAI47_12695	0.37	-2.8
2,671,907	-		IAI47_12695	0.38	-2.6
2,671,907	-		IAI47_12695	0.38	+0.8
2,671,907	-		IAI47_12695	0.38	+0.5
2,672,047	+		IAI47_12695	0.50	-0.0
2,672,047	+		IAI47_12695	0.50	-2.1
2,672,047	+		IAI47_12695	0.50	-1.0
2,672,047	+		IAI47_12695	0.50	+1.1
2,672,048	-		IAI47_12695	0.50	-0.8
2,672,048	-		IAI47_12695	0.50	+2.0
2,672,048	-		IAI47_12695	0.50	-2.1
2,672,079	+		IAI47_12695	0.53	-2.9
2,672,079	+		IAI47_12695	0.53	-0.1
2,672,079	+		IAI47_12695	0.53	+1.4
2,672,143	+		IAI47_12695	0.59	+0.5
2,672,144	-		IAI47_12695	0.59	-2.3
2,672,232	+		IAI47_12695	0.67	-0.9
2,672,242	+		IAI47_12695	0.68	-0.3
2,672,242	+		IAI47_12695	0.68	+0.2
2,672,306	+		IAI47_12695	0.74	-1.1
2,672,307	-		IAI47_12695	0.74	-1.2
2,672,371	+		IAI47_12695	0.79	+1.0
2,672,371	+		IAI47_12695	0.79	+1.0
2,672,371	+		IAI47_12695	0.79	+2.6
2,672,371	+		IAI47_12695	0.79	+0.5
2,672,371	+		IAI47_12695	0.79	-1.6
2,672,371	+		IAI47_12695	0.79	-0.5
2,672,371	+		IAI47_12695	0.79	-1.9
2,672,372	-		IAI47_12695	0.79	-0.1
2,672,372	-		IAI47_12695	0.79	-2.4
2,672,372	-		IAI47_12695	0.79	-1.2
2,672,372	-		IAI47_12695	0.79	-2.1
2,672,372	-		IAI47_12695	0.79	-2.1
2,672,372	-		IAI47_12695	0.79	+1.0
2,672,375	+		IAI47_12695	0.80	-0.4
2,672,375	+		IAI47_12695	0.80	-3.1
2,672,376	-		IAI47_12695	0.80	+0.1
2,672,376	-		IAI47_12695	0.80	-1.6
2,672,376	-		IAI47_12695	0.80	+0.5
2,672,401	+		IAI47_12695	0.82	-2.9
2,672,402	-		IAI47_12695	0.82	-2.6
2,672,402	-		IAI47_12695	0.82	-1.3
2,672,415	+		IAI47_12695	0.83	-2.1
2,672,415	+		IAI47_12695	0.83	-0.3
2,672,415	+		IAI47_12695	0.83	-1.0
2,672,415	+		IAI47_12695	0.83	-0.0
2,672,416	-		IAI47_12695	0.83	-2.0
2,672,453	+		IAI47_12695	0.87	+1.2
2,672,454	-		IAI47_12695	0.87	-1.3
2,672,454	-		IAI47_12695	0.87	+0.4
2,672,454	-		IAI47_12695	0.87	+0.8
2,672,454	-		IAI47_12695	0.87	+0.6
2,672,556	+				-1.2
2,672,557	-				-1.5
2,672,557	-				+1.8
2,672,563	+				+0.7
2,672,563	+				-0.8
2,672,563	+				-1.2
2,672,563	+				-2.7
2,672,564	-				+1.0
2,672,564	-				-2.3
2,672,564	-				+0.4
2,672,564	-				-2.0
2,672,564	-				+0.9
2,672,569	+				-1.8
2,672,569	+				+0.8
2,672,569	+				-1.2
2,672,570	-				-0.5
2,672,743	+		IAI47_12700	0.26	+0.5
2,672,743	+		IAI47_12700	0.26	-2.0
2,672,744	-		IAI47_12700	0.27	-1.8
2,672,744	-		IAI47_12700	0.27	+0.8
2,672,744	-		IAI47_12700	0.27	+0.4
2,672,797	+		IAI47_12700	0.36	-2.7
2,672,804	+		IAI47_12700	0.38	-2.2
2,672,841	+		IAI47_12700	0.44	-1.3
2,672,841	+		IAI47_12700	0.44	-0.9
2,672,841	+		IAI47_12700	0.44	+0.3
2,672,841	+		IAI47_12700	0.44	-2.2
2,672,841	+		IAI47_12700	0.44	+0.6
2,672,841	+		IAI47_12700	0.44	+0.4
2,672,841	+		IAI47_12700	0.44	+0.4
2,672,841	+		IAI47_12700	0.44	+1.0
2,672,841	+		IAI47_12700	0.44	-0.8
2,672,842	-		IAI47_12700	0.45	+0.3
2,672,842	-		IAI47_12700	0.45	-2.3
2,672,842	-		IAI47_12700	0.45	-0.8
2,672,842	-		IAI47_12700	0.45	+0.8
2,672,842	-		IAI47_12700	0.45	-0.5
2,672,842	-		IAI47_12700	0.45	+1.0
2,672,842	-		IAI47_12700	0.45	+0.4
2,672,842	-		IAI47_12700	0.45	-1.5
2,672,863	+		IAI47_12700	0.48	-1.2
2,672,906	+		IAI47_12700	0.56	-2.5
2,672,906	+		IAI47_12700	0.56	-0.2
2,672,906	+		IAI47_12700	0.56	+0.1
2,672,907	-		IAI47_12700	0.57	-0.2
2,672,971	-		IAI47_12700	0.68	+1.5
2,672,971	-		IAI47_12700	0.68	+0.1
2,672,971	-		IAI47_12700	0.68	+1.8
2,672,973	+		IAI47_12700	0.69	-1.4
2,672,973	+		IAI47_12700	0.69	-1.4
2,672,973	+		IAI47_12700	0.69	+0.2
2,672,973	+		IAI47_12700	0.69	-1.2
2,672,974	-		IAI47_12700	0.69	+0.9
2,672,974	-		IAI47_12700	0.69	+1.4
2,673,043	-		IAI47_12700	0.82	-0.4
2,673,061	+		IAI47_12700	0.85	+0.7
2,673,062	-		IAI47_12700	0.85	-0.8
2,673,108	+				-0.1
2,673,121	+				-1.0
2,673,154	+				-0.1
2,673,155	-				-1.2
2,673,155	-				-1.5
2,673,158	+				+2.5
2,673,239	+				-0.6
2,673,239	+				-1.2
2,673,239	+				+1.0
2,673,241	+				+0.7
2,673,259	-				-1.0
2,673,262	+				-1.9
2,673,263	-				-0.3
2,673,263	-				-0.8
2,673,300	+				+0.2
2,673,301	-				+1.5
2,673,301	-				-0.3
2,673,301	-				-1.5
2,673,301	-				-0.6
2,673,312	+				+2.7
2,673,312	+				+2.6
2,673,313	-				-0.1
2,673,313	-				+1.5
2,673,318	+				-0.5
2,673,319	-				-1.6
2,673,323	-				-1.2
2,673,343	-				+0.8
2,673,364	+				-1.7
2,673,364	+				+0.2
2,673,364	+				-0.4
2,673,365	-				-0.5
2,673,365	-				-0.7
2,673,365	-				-0.9
2,673,365	-				+0.1
2,673,429	+		IAI47_12705	0.13	+0.8
2,673,530	+		IAI47_12705	0.23	+0.5
2,673,531	-		IAI47_12705	0.23	-1.2
2,673,567	+		IAI47_12705	0.27	-2.3
2,673,568	-		IAI47_12705	0.27	+2.5
2,673,568	-		IAI47_12705	0.27	+1.3
2,673,568	-		IAI47_12705	0.27	+0.5
2,673,568	-		IAI47_12705	0.27	+0.1
2,673,580	-		IAI47_12705	0.28	+1.6
2,673,580	-		IAI47_12705	0.28	+1.6
2,673,580	-		IAI47_12705	0.28	+0.1
2,673,580	-		IAI47_12705	0.28	-2.8