Strain Fitness in Pantoea sp. MT58 around IAI47_08630

Experiment: Survival; Treatment=FW104 (pH 5); TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW104 (pH 5); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
1,821,380	+		IAI47_08620	0.89	-3.0
1,821,381	-		IAI47_08620	0.89	-0.6
1,821,381	-		IAI47_08620	0.89	-0.2
1,821,461	-				-2.0
1,821,489	+				-0.2
1,821,489	+				+0.6
1,821,489	+				-1.9
1,821,490	-				+2.4
1,821,490	-				-1.3
1,821,536	-				-1.0
1,821,539	-				+1.8
1,821,539	-				+1.1
1,821,539	-				-0.4
1,821,545	-				+0.6
1,821,545	-				-1.7
1,821,545	-				-0.9
1,821,545	-				-1.0
1,821,545	-				-2.2
1,821,587	+				+1.4
1,821,588	-				+0.7
1,821,590	+				+2.5
1,821,590	+				+0.7
1,821,591	-				+0.4
1,821,591	-				-2.2
1,821,591	-				-2.2
1,821,646	+				-0.5
1,821,649	-				+0.8
1,821,653	+				+2.2
1,821,672	-				-2.1
1,821,672	-				+0.5
1,821,672	-				-0.3
1,821,692	+				-1.8
1,821,692	+				+0.9
1,821,696	+				+2.4
1,821,696	+				+0.2
1,821,697	-				-0.2
1,821,697	-				-1.0
1,821,697	-				-1.0
1,821,713	+				-1.9
1,821,713	+				-0.1
1,821,714	-				-1.9
1,821,718	-				+0.0
1,821,732	-				+0.3
1,821,766	+				-0.5
1,821,767	-				+2.0
1,821,785	+				-0.2
1,821,786	-				+0.2
1,821,786	-				-0.3
1,821,833	-				-0.5
1,821,833	-				-0.5
1,821,860	+				-1.2
1,821,861	-				+0.1
1,821,864	-				+0.8
1,821,864	-				-0.3
1,821,919	+				+1.3
1,821,919	+				-2.5
1,821,920	-				+0.2
1,821,920	-				+2.0
1,821,920	-				+0.9
1,821,920	-				-1.0
1,821,920	-				+0.2
1,821,920	-				+1.0
1,821,920	-				+0.3
1,821,922	-				+1.1
1,821,922	-				+0.3
1,821,922	-				-1.7
1,821,942	+		IAI47_08625	0.13	+0.1
1,821,942	+		IAI47_08625	0.13	+3.9
1,821,942	+		IAI47_08625	0.13	+2.1
1,821,943	-		IAI47_08625	0.13	+0.5
1,821,943	-		IAI47_08625	0.13	+0.3
1,821,943	-		IAI47_08625	0.13	+0.2
1,821,943	-		IAI47_08625	0.13	+0.6
1,821,989	+		IAI47_08625	0.38	+2.1
1,821,989	+		IAI47_08625	0.38	-0.2
1,821,990	-		IAI47_08625	0.39	-1.2
1,822,029	-		IAI47_08625	0.60	+0.8
1,822,029	-		IAI47_08625	0.60	-0.5
1,822,029	-		IAI47_08625	0.60	+0.3
1,822,075	+		IAI47_08625	0.84	+0.5
1,822,075	+		IAI47_08625	0.84	-0.8
1,822,103	+				+0.6
1,822,104	-				-0.4
1,822,121	+				-0.8
1,822,150	+				+1.4
1,822,150	+				-2.7
1,822,150	+				+0.4
1,822,150	+				+1.4
1,822,151	-				-0.2
1,822,204	+				+0.9
1,822,205	-				+0.8
1,822,242	+				+1.8
1,822,242	+				+0.3
1,822,242	+				+0.9
1,822,242	+				-2.5
1,822,242	+				-1.5
1,822,242	+				-0.0
1,822,263	+				-1.5
1,822,264	-				-1.5
1,822,264	-				+0.5
1,822,264	-				+0.6
1,822,264	-				-2.2
1,822,272	+				-1.4
1,822,273	-				+0.5
1,822,375	+				-0.8
1,822,375	+				-2.0
1,822,376	-				-2.0
1,822,376	-				-0.8
1,822,404	+				+1.1
1,822,404	+				-1.8
1,822,404	+				-2.0
1,822,404	+				-2.2
1,822,404	+				-1.7
1,822,404	+				-1.5
1,822,404	+				-2.0
1,822,404	+				+1.0
1,822,404	+				-0.6
1,822,404	+				-2.7
1,822,404	+				-1.7
1,822,405	-				-1.6
1,822,405	-				+0.8
1,822,405	-				+1.2
1,822,405	-				+0.2
1,822,405	-				-0.4
1,822,405	-				-1.8
1,822,405	-				-2.5
1,822,405	-				+1.2
1,822,405	-				+0.2
1,822,408	+				+0.9
1,822,408	+				-0.2
1,822,408	+				+3.0
1,822,408	+				+1.8
1,822,408	+				-2.5
1,822,408	+				+1.4
1,822,408	+				+2.1
1,822,408	+				-0.3
1,822,408	+				-1.0
1,822,408	+				-0.8
1,822,408	+				+1.3
1,822,409	-				-1.5
1,822,409	-				-0.5
1,822,409	-				-0.8
1,822,409	-				-2.4
1,822,409	-				+0.8
1,822,409	-				+0.6
1,822,409	-				-1.5
1,822,409	-				+0.1
1,822,409	-				-0.1
1,822,409	-				+2.4
1,822,410	+				-2.2
1,822,410	+				+1.8
1,822,411	-				+0.2
1,822,411	-				-0.1
1,822,411	-				+1.8
1,822,415	+				-2.3
1,822,416	-				-1.2
1,822,416	-				-0.1
1,822,431	+				+1.0
1,822,431	+				-1.2
1,822,431	+				+1.3
1,822,431	+				-0.8
1,822,431	+				+1.0
1,822,431	+				+1.8
1,822,431	+				+1.0
1,822,431	+				-0.7
1,822,431	+				+1.0
1,822,431	+				+1.7
1,822,432	-				-1.5
1,822,432	-				+1.5
1,822,432	-				+0.0
1,822,432	-				+1.8
1,822,486	+		IAI47_08630	0.13	+1.1
1,822,486	+		IAI47_08630	0.13	+1.8
1,822,487	-		IAI47_08630	0.13	+1.2
1,822,554	+		IAI47_08630	0.19	-2.2
1,822,554	+		IAI47_08630	0.19	-0.5
1,822,555	-		IAI47_08630	0.19	+1.1
1,822,609	+		IAI47_08630	0.24	+2.0
1,822,609	+		IAI47_08630	0.24	+0.2
1,822,610	-		IAI47_08630	0.24	+0.4
1,822,610	-		IAI47_08630	0.24	-1.8
1,822,610	-		IAI47_08630	0.24	-2.0
1,822,700	+		IAI47_08630	0.32	-1.0
1,822,700	+		IAI47_08630	0.32	-2.1
1,822,701	-		IAI47_08630	0.32	+1.0
1,822,773	+		IAI47_08630	0.38	+3.4
1,822,773	+		IAI47_08630	0.38	+1.6
1,822,773	+		IAI47_08630	0.38	-2.1
1,822,774	-		IAI47_08630	0.38	-0.5
1,822,774	-		IAI47_08630	0.38	+1.2
1,822,774	-		IAI47_08630	0.38	+0.4
1,822,774	-		IAI47_08630	0.38	-2.5
1,822,787	-		IAI47_08630	0.40	-0.2
1,822,828	+		IAI47_08630	0.43	+0.2
1,822,828	+		IAI47_08630	0.43	-0.8
1,822,828	+		IAI47_08630	0.43	+5.2
1,822,828	+		IAI47_08630	0.43	+2.1
1,822,828	+		IAI47_08630	0.43	-1.4
1,822,828	+		IAI47_08630	0.43	+1.6
1,822,828	+		IAI47_08630	0.43	+0.6
1,822,829	-		IAI47_08630	0.43	+0.6
1,822,829	-		IAI47_08630	0.43	-0.6
1,822,829	-		IAI47_08630	0.43	-1.1
1,822,832	+		IAI47_08630	0.44	-1.8
1,822,832	+		IAI47_08630	0.44	+2.4
1,822,832	+		IAI47_08630	0.44	+0.3
1,822,832	+		IAI47_08630	0.44	+2.1
1,822,832	+		IAI47_08630	0.44	+1.4
1,822,833	-		IAI47_08630	0.44	+3.8
1,822,833	-		IAI47_08630	0.44	+0.4
1,822,833	-		IAI47_08630	0.44	+0.6
1,822,833	-		IAI47_08630	0.44	-0.3
1,822,833	-		IAI47_08630	0.44	-1.8
1,822,872	+		IAI47_08630	0.47	-0.0
1,822,872	+		IAI47_08630	0.47	+0.6
1,822,875	+		IAI47_08630	0.47	-2.2
1,822,875	+		IAI47_08630	0.47	+0.8
1,822,876	-		IAI47_08630	0.47	+1.0
1,822,876	-		IAI47_08630	0.47	-0.1
1,822,876	-		IAI47_08630	0.47	-0.2
1,822,876	-		IAI47_08630	0.47	-0.0
1,822,891	-		IAI47_08630	0.49	-1.8
1,822,891	-		IAI47_08630	0.49	-0.8
1,822,891	-		IAI47_08630	0.49	+2.2
1,822,891	-		IAI47_08630	0.49	-0.1
1,822,891	-		IAI47_08630	0.49	+0.9
1,822,916	-		IAI47_08630	0.51	+4.1
1,822,916	-		IAI47_08630	0.51	+2.8
1,822,922	+		IAI47_08630	0.51	-2.7
1,822,963	+		IAI47_08630	0.55	+0.9
1,822,964	-		IAI47_08630	0.55	-0.3
1,822,964	-		IAI47_08630	0.55	+0.2
1,822,964	-		IAI47_08630	0.55	+1.2
1,822,964	-		IAI47_08630	0.55	+2.6
1,822,964	-		IAI47_08630	0.55	+1.5
1,822,983	+		IAI47_08630	0.57	+0.5
1,822,983	+		IAI47_08630	0.57	-0.5
1,822,983	+		IAI47_08630	0.57	-0.7
1,822,983	+		IAI47_08630	0.57	+2.4
1,822,983	+		IAI47_08630	0.57	-3.3
1,822,983	+		IAI47_08630	0.57	+0.8
1,822,983	+		IAI47_08630	0.57	+2.2
1,822,983	+		IAI47_08630	0.57	-1.2
1,822,983	+		IAI47_08630	0.57	-0.2
1,822,983	+		IAI47_08630	0.57	+2.4
1,822,984	-		IAI47_08630	0.57	+0.6
1,822,984	-		IAI47_08630	0.57	+2.0
1,822,984	-		IAI47_08630	0.57	-0.1
1,822,984	-		IAI47_08630	0.57	+2.3
1,822,984	-		IAI47_08630	0.57	-0.8
1,822,984	-		IAI47_08630	0.57	-0.2
1,822,984	-		IAI47_08630	0.57	-1.9
1,823,026	+		IAI47_08630	0.61	-0.4
1,823,104	-		IAI47_08630	0.67	-1.9
1,823,133	+		IAI47_08630	0.70	-1.0
1,823,146	+		IAI47_08630	0.71	-1.0
1,823,146	+		IAI47_08630	0.71	-0.7
1,823,147	-		IAI47_08630	0.71	+0.5
1,823,178	+		IAI47_08630	0.74	+1.2
1,823,178	+		IAI47_08630	0.74	+0.9
1,823,179	-		IAI47_08630	0.74	+0.1
1,823,179	-		IAI47_08630	0.74	+0.9
1,823,179	-		IAI47_08630	0.74	-2.1
1,823,195	+		IAI47_08630	0.75	-0.8
1,823,195	+		IAI47_08630	0.75	-0.7
1,823,205	+		IAI47_08630	0.76	-2.1
1,823,205	+		IAI47_08630	0.76	-1.4
1,823,205	+		IAI47_08630	0.76	+1.4
1,823,205	+		IAI47_08630	0.76	-2.3
1,823,205	+		IAI47_08630	0.76	+2.2
1,823,205	+		IAI47_08630	0.76	-1.4
1,823,206	-		IAI47_08630	0.76	+0.8
1,823,206	-		IAI47_08630	0.76	-2.6
1,823,206	-		IAI47_08630	0.76	+2.2
1,823,206	-		IAI47_08630	0.76	+2.4
1,823,206	-		IAI47_08630	0.76	+1.0
1,823,208	+		IAI47_08630	0.76	+2.0
1,823,208	+		IAI47_08630	0.76	-1.4
1,823,208	+		IAI47_08630	0.76	+0.7
1,823,208	+		IAI47_08630	0.76	+1.8
1,823,209	-		IAI47_08630	0.77	+0.8
1,823,209	-		IAI47_08630	0.77	+0.6
1,823,209	-		IAI47_08630	0.77	+0.4
1,823,252	-		IAI47_08630	0.80	+1.0
1,823,252	-		IAI47_08630	0.80	+0.7
1,823,298	+		IAI47_08630	0.84	+0.1
1,823,317	-		IAI47_08630	0.86	-1.2
1,823,317	-		IAI47_08630	0.86	-1.2
1,823,317	-		IAI47_08630	0.86	+0.8
1,823,333	-		IAI47_08630	0.87	-2.6
1,823,333	-		IAI47_08630	0.87	-1.2
1,823,333	-		IAI47_08630	0.87	+1.0
1,823,384	+				-0.4
1,823,384	+				+2.0
1,823,436	-				-2.2
1,823,476	+				+1.4
1,823,476	+				+2.5
1,823,477	-				+0.7
1,823,477	-				-0.8
1,823,477	-				+1.1
1,823,477	-				+2.8
1,823,477	-				+1.3
1,823,477	-				-0.5
1,823,477	-				+2.0
1,823,477	-				-0.8
1,823,493	+				+1.1
1,823,514	+				-0.2
1,823,514	+				-1.8
1,823,514	+				-1.4
1,823,514	+				-1.2
1,823,514	+				+0.4
1,823,515	-				-1.7
1,823,515	-				-0.5
1,823,515	-				+0.8
1,823,521	+				+0.2
1,823,521	+				+0.3
1,823,522	-				-1.2
1,823,533	+				+2.6
1,823,623	+				-1.4
1,823,623	+				+0.9
1,823,623	+				-2.3
1,823,631	+				-1.4
1,823,632	-				+1.8
1,823,632	-				+2.1
1,823,657	-				-1.7
1,823,678	-				-1.5
1,823,787	-		IAI47_08635	0.34	-2.5
1,823,838	+		IAI47_08635	0.49	+3.1
1,823,838	+		IAI47_08635	0.49	-1.5
1,823,909	+		IAI47_08635	0.71	+1.8
1,823,910	-		IAI47_08635	0.71	-1.7
1,823,924	-		IAI47_08635	0.75	-0.8
1,823,924	-		IAI47_08635	0.75	+2.3
1,823,927	+		IAI47_08635	0.76	-1.4
1,823,927	+		IAI47_08635	0.76	-2.5
1,823,928	-		IAI47_08635	0.76	+0.0
1,823,934	+		IAI47_08635	0.78	-1.4
1,823,935	-		IAI47_08635	0.78	-0.5
1,823,935	-		IAI47_08635	0.78	-1.2
1,823,935	-		IAI47_08635	0.78	+1.4
1,823,935	-		IAI47_08635	0.78	+1.2
1,823,935	-		IAI47_08635	0.78	-1.8
1,823,936	+		IAI47_08635	0.79	-0.4
1,823,937	-		IAI47_08635	0.79	+0.8
1,824,009	+				+0.2
1,824,010	-				-1.4
1,824,010	-				+0.5
1,824,113	+		IAI47_08640	0.34	-1.2
1,824,113	+		IAI47_08640	0.34	-0.8
1,824,113	+		IAI47_08640	0.34	-2.6
1,824,113	+		IAI47_08640	0.34	+0.2
1,824,113	+		IAI47_08640	0.34	+1.9
1,824,113	+		IAI47_08640	0.34	+5.2
1,824,113	+		IAI47_08640	0.34	+1.8
1,824,113	+		IAI47_08640	0.34	-1.2
1,824,113	+		IAI47_08640	0.34	+0.0
1,824,114	-		IAI47_08640	0.35	-1.0
1,824,114	-		IAI47_08640	0.35	-2.4
1,824,114	-		IAI47_08640	0.35	+0.9
1,824,114	-		IAI47_08640	0.35	-1.2
1,824,114	-		IAI47_08640	0.35	+1.0
1,824,114	-		IAI47_08640	0.35	+2.1
1,824,114	-		IAI47_08640	0.35	-1.0
1,824,114	-		IAI47_08640	0.35	+0.5
1,824,115	+		IAI47_08640	0.35	-1.2
1,824,115	+		IAI47_08640	0.35	-2.4
1,824,115	+		IAI47_08640	0.35	-1.7
1,824,115	+		IAI47_08640	0.35	-1.9
1,824,116	-		IAI47_08640	0.35	+0.8
1,824,116	-		IAI47_08640	0.35	-2.2
1,824,116	-		IAI47_08640	0.35	-0.2
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