Strain Fitness in Pantoea sp. MT58 around IAI47_06330

Experiment: Survival; Treatment=FW104 (pH 5); TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW104 (pH 5); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
1,286,741	+		IAI47_06325	0.53	-0.9
1,286,741	+		IAI47_06325	0.53	-1.1
1,286,741	+		IAI47_06325	0.53	-0.3
1,286,741	+		IAI47_06325	0.53	-0.3
1,286,741	+		IAI47_06325	0.53	+1.7
1,286,741	+		IAI47_06325	0.53	+0.7
1,286,742	-		IAI47_06325	0.53	-0.6
1,286,742	-		IAI47_06325	0.53	-1.6
1,286,742	-		IAI47_06325	0.53	-0.6
1,286,754	+		IAI47_06325	0.54	-0.9
1,286,754	+		IAI47_06325	0.54	-1.3
1,286,813	+		IAI47_06325	0.59	-0.9
1,286,819	+		IAI47_06325	0.60	-0.6
1,286,819	+		IAI47_06325	0.60	-1.6
1,286,819	+		IAI47_06325	0.60	-2.1
1,286,819	+		IAI47_06325	0.60	+0.7
1,286,819	+		IAI47_06325	0.60	-0.9
1,286,820	-		IAI47_06325	0.60	-1.7
1,286,820	-		IAI47_06325	0.60	-0.6
1,286,820	-		IAI47_06325	0.60	+0.1
1,286,820	-		IAI47_06325	0.60	+0.1
1,286,861	-		IAI47_06325	0.63	-0.9
1,286,913	+		IAI47_06325	0.67	-1.4
1,287,030	+		IAI47_06325	0.77	+0.7
1,287,031	-		IAI47_06325	0.77	-0.6
1,287,032	-		IAI47_06325	0.77	-1.9
1,287,090	+		IAI47_06325	0.82	-1.6
1,287,256	-				-0.6
1,287,289	+				-3.1
1,287,290	-				-1.7
1,287,294	+				-2.7
1,287,294	+				-0.6
1,287,295	-				-0.3
1,287,295	-				-1.6
1,287,295	-				-0.0
1,287,309	+				-0.6
1,287,310	-				-0.8
1,287,314	-				+0.5
1,287,335	+				+0.9
1,287,336	-				-0.8
1,287,351	-				-0.8
1,287,351	-				+0.0
1,287,376	-				-2.4
1,287,381	-				+0.4
1,287,523	-				-2.3
1,287,523	-				+0.4
1,287,523	-				+1.7
1,287,523	-				-0.3
1,287,523	-				-0.7
1,287,538	+				+1.1
1,287,554	+				-0.6
1,287,698	+		IAI47_06330	0.13	-1.0
1,287,698	+		IAI47_06330	0.13	-0.5
1,287,698	+		IAI47_06330	0.13	-2.7
1,287,698	+		IAI47_06330	0.13	-0.0
1,287,698	+		IAI47_06330	0.13	+0.4
1,287,698	+		IAI47_06330	0.13	-2.6
1,287,698	+		IAI47_06330	0.13	-1.5
1,287,698	+		IAI47_06330	0.13	-0.4
1,287,698	+		IAI47_06330	0.13	+2.6
1,287,698	+		IAI47_06330	0.13	+0.4
1,287,698	+		IAI47_06330	0.13	+1.7
1,287,698	+		IAI47_06330	0.13	-1.4
1,287,698	+		IAI47_06330	0.13	+2.0
1,287,698	+		IAI47_06330	0.13	+0.7
1,287,699	-		IAI47_06330	0.13	+0.4
1,287,699	-		IAI47_06330	0.13	-1.8
1,287,699	-		IAI47_06330	0.13	+2.1
1,287,699	-		IAI47_06330	0.13	-1.4
1,287,699	-		IAI47_06330	0.13	+0.5
1,287,699	-		IAI47_06330	0.13	-0.2
1,287,699	-		IAI47_06330	0.13	+0.8
1,287,699	-		IAI47_06330	0.13	-0.7
1,287,699	-		IAI47_06330	0.13	-2.8
1,287,699	-		IAI47_06330	0.13	-0.4
1,287,699	-		IAI47_06330	0.13	+0.0
1,287,699	-		IAI47_06330	0.13	-1.7
1,287,699	-		IAI47_06330	0.13	-1.1
1,287,699	-		IAI47_06330	0.13	-2.7
1,287,699	-		IAI47_06330	0.13	-0.8
1,287,699	-		IAI47_06330	0.13	-1.1
1,287,700	+		IAI47_06330	0.13	-1.4
1,287,700	+		IAI47_06330	0.13	-0.6
1,287,700	+		IAI47_06330	0.13	+0.3
1,287,701	-		IAI47_06330	0.13	-0.3
1,287,701	-		IAI47_06330	0.13	-0.8
1,287,701	-		IAI47_06330	0.13	-3.1
1,287,701	-		IAI47_06330	0.13	-1.4
1,287,701	-		IAI47_06330	0.13	-0.8
1,287,701	-		IAI47_06330	0.13	-2.0
1,287,701	-		IAI47_06330	0.13	-2.5
1,287,701	-		IAI47_06330	0.13	+3.7
1,287,701	-		IAI47_06330	0.13	+0.7
1,287,701	-		IAI47_06330	0.13	+0.8
1,287,701	-		IAI47_06330	0.13	+0.7
1,287,701	-		IAI47_06330	0.13	+0.2
1,287,722	-		IAI47_06330	0.18	+0.5
1,287,722	-		IAI47_06330	0.18	-1.8
1,287,787	+		IAI47_06330	0.32	+0.6
1,287,787	+		IAI47_06330	0.32	+0.4
1,287,787	+		IAI47_06330	0.32	-0.0
1,287,787	+		IAI47_06330	0.32	+1.4
1,287,787	+		IAI47_06330	0.32	+0.7
1,287,809	-		IAI47_06330	0.37	+2.3
1,287,946	+		IAI47_06330	0.67	-0.9
1,287,946	+		IAI47_06330	0.67	+0.4
1,287,947	-		IAI47_06330	0.68	-1.7
1,287,947	-		IAI47_06330	0.68	+1.5
1,287,947	-		IAI47_06330	0.68	+0.5
1,287,947	-		IAI47_06330	0.68	-1.4
1,288,022	+		IAI47_06330	0.84	-0.8
1,288,022	+		IAI47_06330	0.84	+1.1
1,288,057	+				+1.7
1,288,058	-				-1.4
1,288,058	-				+2.5
1,288,092	-				+0.1
1,288,092	-				+0.9
1,288,117	+				+0.7
1,288,117	+				-0.6
1,288,118	-				-0.0
1,288,118	-				+0.5
1,288,121	+				+0.4
1,288,122	-				-1.1
1,288,128	-				+3.6
1,288,281	+				-0.6
1,288,282	-				+0.3
1,288,283	+				+0.7
1,288,283	+				+0.2
1,288,284	-				+1.0
1,288,284	-				+0.4
1,288,284	-				-1.4
1,288,284	-				-1.7
1,288,357	-		IAI47_06335	0.24	+0.9
1,288,430	+		IAI47_06335	0.39	+3.5
1,288,431	-		IAI47_06335	0.39	+1.7
1,288,433	+		IAI47_06335	0.39	-0.2
1,288,434	-		IAI47_06335	0.39	+2.3
1,288,434	-		IAI47_06335	0.39	-1.7
1,288,481	+		IAI47_06335	0.49	-2.3
1,288,481	+		IAI47_06335	0.49	+1.7
1,288,481	+		IAI47_06335	0.49	-1.0
1,288,481	+		IAI47_06335	0.49	-1.2
1,288,482	-		IAI47_06335	0.49	+1.2
1,288,482	-		IAI47_06335	0.49	+0.9
1,288,482	-		IAI47_06335	0.49	+1.5
1,288,482	-		IAI47_06335	0.49	+4.6
1,288,554	+		IAI47_06335	0.64	+2.5
1,288,554	+		IAI47_06335	0.64	+0.4
1,288,555	-		IAI47_06335	0.64	+0.2
1,288,565	+		IAI47_06335	0.66	-0.5
1,288,565	+		IAI47_06335	0.66	+1.3
1,288,566	-		IAI47_06335	0.66	-0.3
1,288,574	+		IAI47_06335	0.68	+0.7
1,288,574	+		IAI47_06335	0.68	+1.7
1,288,574	+		IAI47_06335	0.68	+0.6
1,288,574	+		IAI47_06335	0.68	-0.6
1,288,574	+		IAI47_06335	0.68	+0.7
1,288,574	+		IAI47_06335	0.68	+0.3
1,288,575	-		IAI47_06335	0.68	-0.8
1,288,575	-		IAI47_06335	0.68	-0.6
1,288,587	+		IAI47_06335	0.70	-0.9
1,288,587	+		IAI47_06335	0.70	+1.4
1,288,587	+		IAI47_06335	0.70	-1.1
1,288,589	+		IAI47_06335	0.71	-2.4
1,288,589	+		IAI47_06335	0.71	+0.4
1,288,589	+		IAI47_06335	0.71	+0.9
1,288,589	+		IAI47_06335	0.71	+0.7
1,288,607	+		IAI47_06335	0.74	-2.2
1,288,647	+		IAI47_06335	0.82	-1.4
1,288,647	+		IAI47_06335	0.82	+0.1
1,288,647	+		IAI47_06335	0.82	-0.3
1,288,648	-		IAI47_06335	0.83	+0.9
1,288,660	+		IAI47_06335	0.85	-1.1
1,288,660	+		IAI47_06335	0.85	-0.2
1,288,660	+		IAI47_06335	0.85	+0.7
1,288,661	-		IAI47_06335	0.85	-1.3
1,288,661	-		IAI47_06335	0.85	-1.4
1,288,661	-		IAI47_06335	0.85	-0.1
1,288,661	-		IAI47_06335	0.85	-2.2
1,288,690	-				-0.2
1,288,690	-				+2.3
1,288,696	+				+0.0
1,288,696	+				-1.6
1,288,696	+				-1.1
1,288,696	+				+1.6
1,288,696	+				+0.5
1,288,697	-				-2.2
1,288,697	-				-0.8
1,288,697	-				-0.6
1,288,697	-				-0.8
1,288,707	+				+0.2
1,288,753	+				+2.0
1,288,753	+				-2.0
1,288,754	-				+0.6
1,288,754	-				-0.6
1,288,766	+				-0.6
1,288,766	+				-1.3
1,288,775	+				-0.3
1,288,846	-		IAI47_06340	0.15	-1.0
1,288,872	+		IAI47_06340	0.19	-0.4
1,288,873	-		IAI47_06340	0.19	-2.3
1,288,935	+		IAI47_06340	0.28	-1.1
1,288,935	+		IAI47_06340	0.28	+0.5
1,288,935	+		IAI47_06340	0.28	+1.0
1,288,936	-		IAI47_06340	0.29	-3.1
1,288,937	+		IAI47_06340	0.29	-1.6
1,288,937	+		IAI47_06340	0.29	+0.2
1,288,937	+		IAI47_06340	0.29	+0.0
1,288,937	+		IAI47_06340	0.29	-1.3
1,288,938	-		IAI47_06340	0.29	-2.0
1,288,938	-		IAI47_06340	0.29	+0.3
1,288,938	-		IAI47_06340	0.29	+1.0
1,288,938	-		IAI47_06340	0.29	-1.2
1,288,950	+		IAI47_06340	0.31	+0.2
1,289,043	+		IAI47_06340	0.45	-0.4
1,289,043	+		IAI47_06340	0.45	+0.9
1,289,044	-		IAI47_06340	0.45	+1.7
1,289,044	-		IAI47_06340	0.45	+0.3
1,289,044	-		IAI47_06340	0.45	-1.7
1,289,044	-		IAI47_06340	0.45	-2.1
1,289,044	-		IAI47_06340	0.45	-2.2