Strain Fitness in Pantoea sp. MT58 around IAI47_04825

Experiment: Survival; Treatment=FW104 (pH 5); TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW104 (pH 5); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
1,011,684	-				+1.2
1,011,684	-				-2.2
1,011,684	-				+1.8
1,011,684	-				+0.8
1,011,684	-				-0.3
1,011,684	-				+1.1
1,011,684	-				-0.5
1,011,684	-				+1.0
1,011,685	+				-3.3
1,011,685	+				+3.4
1,011,685	+				+0.8
1,011,685	+				+0.6
1,011,685	+				-0.7
1,011,686	-				+0.9
1,011,686	-				-2.7
1,011,686	-				+2.5
1,011,686	-				-2.6
1,011,712	-				+1.2
1,011,712	-				+1.0
1,011,712	-				-2.8
1,011,712	-				-1.0
1,011,733	-				-0.2
1,011,733	-				-1.5
1,011,733	-				+0.3
1,011,747	+				+0.8
1,011,747	+				+0.6
1,011,747	+				-0.6
1,012,356	+				-1.9
1,012,356	+				-1.2
1,012,357	-				-0.7
1,012,362	+				-1.4
1,012,363	-				+0.1
1,012,589	+		IAI47_04825	0.23	+0.0
1,012,590	-		IAI47_04825	0.23	+1.8
1,012,590	-		IAI47_04825	0.23	-1.0
1,012,590	-		IAI47_04825	0.23	+2.3
1,012,590	-		IAI47_04825	0.23	-2.8
1,012,673	+		IAI47_04825	0.36	+1.6
1,012,674	-		IAI47_04825	0.36	-1.0
1,012,679	+		IAI47_04825	0.36	+1.1
1,012,679	+		IAI47_04825	0.36	-1.9
1,012,718	+		IAI47_04825	0.42	+0.9
1,012,734	+		IAI47_04825	0.44	+0.1
1,012,749	+		IAI47_04825	0.47	-1.4
1,012,749	+		IAI47_04825	0.47	-1.2
1,012,749	+		IAI47_04825	0.47	+1.0
1,012,750	-		IAI47_04825	0.47	-0.8
1,012,750	-		IAI47_04825	0.47	-0.9
1,012,750	-		IAI47_04825	0.47	-0.5
1,012,814	+		IAI47_04825	0.56	-0.4
1,012,832	+		IAI47_04825	0.59	-2.4
1,012,832	+		IAI47_04825	0.59	-2.7
1,012,833	-		IAI47_04825	0.59	+0.3
1,012,834	+		IAI47_04825	0.59	-2.7
1,012,834	+		IAI47_04825	0.59	+1.0
1,012,834	+		IAI47_04825	0.59	+0.1
1,012,834	+		IAI47_04825	0.59	+1.0
1,012,834	+		IAI47_04825	0.59	+2.1
1,012,834	+		IAI47_04825	0.59	-0.1
1,012,834	+		IAI47_04825	0.59	+0.3
1,012,834	+		IAI47_04825	0.59	+0.2
1,012,834	+		IAI47_04825	0.59	+1.3
1,012,835	-		IAI47_04825	0.59	+0.1
1,012,835	-		IAI47_04825	0.59	-1.5
1,012,835	-		IAI47_04825	0.59	-0.8
1,012,835	-		IAI47_04825	0.59	+1.0
1,012,835	-		IAI47_04825	0.59	+0.7
1,012,835	-		IAI47_04825	0.59	+0.5
1,012,835	-		IAI47_04825	0.59	+1.2
1,012,835	-		IAI47_04825	0.59	+1.4
1,012,835	-		IAI47_04825	0.59	-1.0
1,012,838	+		IAI47_04825	0.60	+4.2
1,012,838	+		IAI47_04825	0.60	+0.6
1,012,838	+		IAI47_04825	0.60	+0.7
1,012,838	+		IAI47_04825	0.60	+0.2
1,012,839	-		IAI47_04825	0.60	-0.0
1,012,839	-		IAI47_04825	0.60	+2.8
1,012,839	-		IAI47_04825	0.60	+1.8
1,012,839	-		IAI47_04825	0.60	+1.9
1,012,839	-		IAI47_04825	0.60	-0.2
1,012,839	-		IAI47_04825	0.60	+2.1
1,012,976	+		IAI47_04825	0.80	+2.3
1,012,999	+		IAI47_04825	0.83	+1.3
1,013,007	+		IAI47_04825	0.85	+1.2
1,013,007	+		IAI47_04825	0.85	+0.8
1,013,008	-		IAI47_04825	0.85	+1.4
1,013,008	-		IAI47_04825	0.85	-1.8
1,013,008	-		IAI47_04825	0.85	-2.0
1,013,051	+				-0.2
1,013,052	-				+2.1
1,013,052	-				+1.0
1,013,052	-				+0.1
1,013,052	-				-2.4
1,013,056	+				-3.2
1,013,056	+				-0.8
1,013,056	+				-1.4
1,013,056	+				+1.3
1,013,057	-				-2.1
1,013,130	+				-1.7
1,013,139	-				-1.5
1,013,144	+				-1.8
1,013,144	+				+2.0
1,013,144	+				+0.5
1,013,144	+				+0.6
1,013,144	+				-0.5
1,013,144	+				+2.6
1,013,144	+				+0.7
1,013,145	-				+0.3
1,013,145	-				-2.7
1,013,145	-				-0.7
1,013,145	-				-0.5
1,013,145	-				-0.5
1,013,145	-				+2.2
1,013,145	-				-2.3
1,013,263	+				+2.5
1,013,269	+				+0.9
1,013,269	+				+0.8
1,013,301	+				-2.1
1,013,302	-				-0.1
1,013,325	+				-1.5
1,013,325	+				+1.6
1,013,326	-				-1.5
1,013,326	-				-0.6
1,013,326	-				+0.5
1,013,326	-				-2.7
1,013,326	-				-1.0
1,013,326	-				+0.5
1,013,337	-				-0.8
1,013,337	-				+2.5
1,013,398	-		IAI47_04830	0.11	+0.2
1,013,466	-		IAI47_04830	0.29	-0.4
1,013,466	-		IAI47_04830	0.29	-1.8
1,013,536	+		IAI47_04830	0.47	+0.7
1,013,537	-		IAI47_04830	0.48	+0.4
1,013,615	-		IAI47_04830	0.68	-2.3
1,013,630	+		IAI47_04830	0.72	+0.2
1,013,630	+		IAI47_04830	0.72	-0.1
1,013,630	+		IAI47_04830	0.72	-2.6
1,013,631	-		IAI47_04830	0.72	-2.6
1,013,631	-		IAI47_04830	0.72	-2.0
1,013,631	-		IAI47_04830	0.72	-1.2
1,013,631	-		IAI47_04830	0.72	-0.4
1,013,631	-		IAI47_04830	0.72	+0.9
1,013,661	-		IAI47_04830	0.80	-1.2
1,013,674	+		IAI47_04830	0.83	-1.1
1,013,674	+		IAI47_04830	0.83	+0.8
1,013,674	+		IAI47_04830	0.83	-0.0
1,013,675	-		IAI47_04830	0.84	-0.1
1,013,716	+				-2.3
1,013,716	+				-2.8
1,013,716	+				-0.4
1,013,723	-				-0.9
1,013,723	-				-0.4
1,013,735	+				+2.8
1,013,735	+				+0.8
1,013,735	+				-1.5
1,013,735	+				-0.2
1,013,736	-				-1.9
1,013,736	-				-3.0
1,013,736	-				-1.4
1,013,736	-				+2.4
1,013,748	+				-1.2
1,013,749	-				-0.6
1,013,797	+				+0.7
1,013,798	-				-1.2
1,013,798	-				-0.9
1,013,798	-				-0.3
1,013,798	-				-2.1
1,013,802	-				+1.3
1,013,802	-				+0.9
1,013,813	-				+1.1
1,013,813	-				+0.8
1,013,822	-				-0.2
1,013,837	+				+0.1
1,013,837	+				-0.8
1,013,837	+				+0.2
1,013,838	-				-1.8
1,013,850	+				-0.1
1,013,850	+				-0.1
1,013,890	+				-1.5
1,013,890	+				+1.2
1,013,891	-				+2.0
1,013,893	+				+0.3
1,013,893	+				+3.1
1,013,893	+				+0.2
1,013,894	-				-0.5
1,013,900	+				-0.5
1,013,900	+				-1.3
1,013,900	+				-2.4
1,013,901	-				+0.7
1,013,901	-				-2.9
1,013,907	+				+0.2
1,013,956	-				+1.6
1,013,956	-				+2.0
1,013,980	+				+0.9
1,013,981	-				-0.7
1,013,981	-				-0.3