Experiment: Survival; Treatment=FW104 (pH 5); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_03230 and IAI47_03235 are separated by 350 nucleotides IAI47_03235 and IAI47_03240 are separated by 6 nucleotides IAI47_03240 and IAI47_03245 are separated by 236 nucleotides
IAI47_03230: IAI47_03230 - TRAP transporter substrate-binding protein, at 669,723 to 670,694
_03230
IAI47_03235: IAI47_03235 - tol-pal system-associated acyl-CoA thioesterase, at 671,045 to 671,767
_03235
IAI47_03240: IAI47_03240 - TonB system transport protein ExbD, at 671,774 to 672,196
_03240
IAI47_03245: IAI47_03245 - MFS transporter, at 672,433 to 673,758
_03245
Position (kb) 671
672 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 670.058 kb on + strand, within IAI47_03230 at 670.058 kb on + strand, within IAI47_03230 at 670.059 kb on - strand, within IAI47_03230 at 670.059 kb on - strand, within IAI47_03230 at 670.059 kb on - strand, within IAI47_03230 at 670.059 kb on - strand, within IAI47_03230 at 670.199 kb on + strand, within IAI47_03230 at 670.200 kb on - strand, within IAI47_03230 at 670.200 kb on - strand, within IAI47_03230 at 670.200 kb on - strand, within IAI47_03230 at 670.200 kb on - strand, within IAI47_03230 at 670.200 kb on - strand, within IAI47_03230 at 670.205 kb on + strand, within IAI47_03230 at 670.205 kb on + strand, within IAI47_03230 at 670.205 kb on + strand, within IAI47_03230 at 670.206 kb on - strand, within IAI47_03230 at 670.301 kb on + strand, within IAI47_03230 at 670.329 kb on + strand, within IAI47_03230 at 670.330 kb on - strand, within IAI47_03230 at 670.330 kb on - strand, within IAI47_03230 at 670.330 kb on - strand, within IAI47_03230 at 670.330 kb on - strand, within IAI47_03230 at 670.349 kb on + strand, within IAI47_03230 at 670.349 kb on + strand, within IAI47_03230 at 670.349 kb on + strand, within IAI47_03230 at 670.349 kb on + strand, within IAI47_03230 at 670.349 kb on + strand, within IAI47_03230 at 670.350 kb on - strand, within IAI47_03230 at 670.350 kb on - strand, within IAI47_03230 at 670.350 kb on - strand, within IAI47_03230 at 670.350 kb on - strand, within IAI47_03230 at 670.350 kb on - strand, within IAI47_03230 at 670.350 kb on - strand, within IAI47_03230 at 670.350 kb on - strand, within IAI47_03230 at 670.350 kb on - strand, within IAI47_03230 at 670.350 kb on - strand, within IAI47_03230 at 670.350 kb on - strand, within IAI47_03230 at 670.378 kb on + strand, within IAI47_03230 at 670.412 kb on + strand, within IAI47_03230 at 670.445 kb on + strand, within IAI47_03230 at 670.445 kb on + strand, within IAI47_03230 at 670.445 kb on + strand, within IAI47_03230 at 670.446 kb on - strand, within IAI47_03230 at 670.511 kb on - strand, within IAI47_03230 at 670.511 kb on - strand, within IAI47_03230 at 670.616 kb on + strand at 670.616 kb on + strand at 670.617 kb on - strand at 670.617 kb on - strand at 670.617 kb on - strand at 670.644 kb on + strand at 670.644 kb on + strand at 670.644 kb on + strand at 670.644 kb on + strand at 670.644 kb on + strand at 670.645 kb on - strand at 670.645 kb on - strand at 670.645 kb on - strand at 670.645 kb on - strand at 670.695 kb on + strand at 670.695 kb on + strand at 670.696 kb on - strand at 670.715 kb on + strand at 670.715 kb on + strand at 670.715 kb on + strand at 670.716 kb on - strand at 670.716 kb on - strand at 670.737 kb on + strand at 670.766 kb on + strand at 670.766 kb on + strand at 670.767 kb on - strand at 670.767 kb on - strand at 670.767 kb on - strand at 670.767 kb on - strand at 670.767 kb on - strand at 670.767 kb on - strand at 670.795 kb on + strand at 670.795 kb on + strand at 670.795 kb on + strand at 670.795 kb on + strand at 670.796 kb on - strand at 670.796 kb on - strand at 670.796 kb on - strand at 670.796 kb on - strand at 670.796 kb on - strand at 670.796 kb on - strand at 670.977 kb on + strand at 670.977 kb on + strand at 670.980 kb on + strand at 670.981 kb on - strand at 671.075 kb on + strand at 671.075 kb on + strand at 671.075 kb on + strand at 671.075 kb on + strand at 671.075 kb on + strand at 671.075 kb on + strand at 671.075 kb on + strand at 671.075 kb on + strand at 671.075 kb on + strand at 671.075 kb on + strand at 671.075 kb on + strand at 671.075 kb on + strand at 671.076 kb on - strand at 671.076 kb on - strand at 671.090 kb on - strand at 671.162 kb on + strand, within IAI47_03235 at 671.162 kb on + strand, within IAI47_03235 at 671.162 kb on + strand, within IAI47_03235 at 671.163 kb on - strand, within IAI47_03235 at 671.163 kb on - strand, within IAI47_03235 at 671.163 kb on - strand, within IAI47_03235 at 671.163 kb on - strand, within IAI47_03235 at 671.163 kb on - strand, within IAI47_03235 at 671.227 kb on + strand, within IAI47_03235 at 671.233 kb on + strand, within IAI47_03235 at 671.233 kb on + strand, within IAI47_03235 at 671.234 kb on - strand, within IAI47_03235 at 671.234 kb on - strand, within IAI47_03235 at 671.234 kb on - strand, within IAI47_03235 at 671.315 kb on + strand, within IAI47_03235 at 671.338 kb on + strand, within IAI47_03235 at 671.338 kb on + strand, within IAI47_03235 at 671.351 kb on - strand, within IAI47_03235 at 671.351 kb on - strand, within IAI47_03235 at 671.455 kb on + strand, within IAI47_03235 at 671.455 kb on + strand, within IAI47_03235 at 671.612 kb on + strand, within IAI47_03235 at 671.613 kb on - strand, within IAI47_03235 at 671.613 kb on - strand, within IAI47_03235 at 671.639 kb on - strand, within IAI47_03235 at 671.642 kb on + strand, within IAI47_03235 at 671.643 kb on - strand, within IAI47_03235 at 671.643 kb on - strand, within IAI47_03235 at 671.643 kb on - strand, within IAI47_03235 at 671.765 kb on + strand at 671.765 kb on + strand at 671.765 kb on + strand at 671.765 kb on + strand at 671.766 kb on - strand at 671.766 kb on - strand at 671.773 kb on + strand at 671.774 kb on - strand at 671.827 kb on + strand, within IAI47_03240 at 671.827 kb on + strand, within IAI47_03240 at 671.842 kb on + strand, within IAI47_03240 at 671.876 kb on - strand, within IAI47_03240 at 671.876 kb on - strand, within IAI47_03240 at 671.966 kb on + strand, within IAI47_03240 at 671.966 kb on + strand, within IAI47_03240 at 671.967 kb on - strand, within IAI47_03240 at 671.967 kb on - strand, within IAI47_03240 at 671.975 kb on - strand, within IAI47_03240 at 671.975 kb on - strand, within IAI47_03240 at 671.975 kb on - strand, within IAI47_03240 at 671.987 kb on - strand, within IAI47_03240 at 671.996 kb on + strand, within IAI47_03240 at 671.997 kb on - strand, within IAI47_03240 at 671.997 kb on - strand, within IAI47_03240 at 672.107 kb on + strand, within IAI47_03240 at 672.133 kb on + strand, within IAI47_03240 at 672.133 kb on + strand, within IAI47_03240 at 672.134 kb on - strand, within IAI47_03240 at 672.152 kb on + strand, within IAI47_03240 at 672.194 kb on + strand at 672.195 kb on - strand at 672.203 kb on - strand at 672.215 kb on + strand at 672.215 kb on + strand at 672.215 kb on + strand at 672.215 kb on + strand at 672.215 kb on + strand at 672.215 kb on + strand at 672.215 kb on + strand at 672.216 kb on - strand at 672.216 kb on - strand at 672.216 kb on - strand at 672.216 kb on - strand at 672.216 kb on - strand at 672.226 kb on + strand at 672.226 kb on + strand at 672.226 kb on + strand at 672.226 kb on + strand at 672.227 kb on - strand at 672.245 kb on + strand at 672.246 kb on - strand at 672.301 kb on + strand at 672.301 kb on + strand at 672.301 kb on + strand at 672.301 kb on + strand at 672.301 kb on + strand at 672.301 kb on + strand at 672.301 kb on + strand at 672.302 kb on - strand at 672.302 kb on - strand at 672.302 kb on - strand at 672.302 kb on - strand at 672.302 kb on - strand at 672.302 kb on - strand at 672.302 kb on - strand at 672.334 kb on + strand at 672.335 kb on - strand at 672.338 kb on + strand at 672.338 kb on + strand at 672.338 kb on + strand at 672.339 kb on - strand at 672.339 kb on - strand at 672.339 kb on - strand at 672.342 kb on + strand at 672.346 kb on + strand at 672.355 kb on - strand at 672.382 kb on + strand at 672.382 kb on + strand at 672.383 kb on - strand at 672.402 kb on + strand at 672.402 kb on + strand at 672.421 kb on + strand at 672.422 kb on - strand at 672.422 kb on - strand at 672.432 kb on + strand at 672.432 kb on + strand at 672.433 kb on - strand at 672.483 kb on + strand at 672.483 kb on + strand at 672.483 kb on + strand at 672.484 kb on - strand at 672.484 kb on - strand at 672.484 kb on - strand at 672.484 kb on - strand at 672.504 kb on + strand at 672.505 kb on - strand at 672.505 kb on - strand at 672.520 kb on + strand at 672.520 kb on + strand at 672.520 kb on + strand at 672.521 kb on - strand at 672.541 kb on + strand at 672.542 kb on - strand at 672.544 kb on + strand at 672.544 kb on + strand at 672.544 kb on + strand at 672.545 kb on - strand at 672.545 kb on - strand at 672.545 kb on - strand at 672.545 kb on - strand at 672.545 kb on - strand at 672.662 kb on + strand, within IAI47_03245 at 672.670 kb on + strand, within IAI47_03245 at 672.670 kb on + strand, within IAI47_03245 at 672.671 kb on - strand, within IAI47_03245 at 672.671 kb on - strand, within IAI47_03245 at 672.671 kb on - strand, within IAI47_03245 at 672.671 kb on - strand, within IAI47_03245 at 672.671 kb on - strand, within IAI47_03245 at 672.671 kb on - strand, within IAI47_03245 at 672.671 kb on - strand, within IAI47_03245 at 672.693 kb on + strand, within IAI47_03245 at 672.694 kb on - strand, within IAI47_03245 at 672.720 kb on - strand, within IAI47_03245 at 672.732 kb on + strand, within IAI47_03245 at 672.733 kb on - strand, within IAI47_03245 at 672.761 kb on - strand, within IAI47_03245 at 672.761 kb on - strand, within IAI47_03245 at 672.761 kb on - strand, within IAI47_03245 at 672.765 kb on + strand, within IAI47_03245 at 672.765 kb on + strand, within IAI47_03245 at 672.765 kb on + strand, within IAI47_03245 at 672.766 kb on - strand, within IAI47_03245 at 672.766 kb on - strand, within IAI47_03245
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=FW104 (pH 5); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 remove 670,058 + IAI47_03230 0.34 +3.3 670,058 + IAI47_03230 0.34 -2.2 670,059 - IAI47_03230 0.35 +2.5 670,059 - IAI47_03230 0.35 -0.0 670,059 - IAI47_03230 0.35 -0.3 670,059 - IAI47_03230 0.35 +2.4 670,199 + IAI47_03230 0.49 -0.4 670,200 - IAI47_03230 0.49 -1.0 670,200 - IAI47_03230 0.49 -0.7 670,200 - IAI47_03230 0.49 +0.3 670,200 - IAI47_03230 0.49 -2.7 670,200 - IAI47_03230 0.49 -0.2 670,205 + IAI47_03230 0.50 +1.1 670,205 + IAI47_03230 0.50 +0.4 670,205 + IAI47_03230 0.50 -0.3 670,206 - IAI47_03230 0.50 -1.0 670,301 + IAI47_03230 0.59 +0.0 670,329 + IAI47_03230 0.62 +0.4 670,330 - IAI47_03230 0.62 +1.4 670,330 - IAI47_03230 0.62 +1.7 670,330 - IAI47_03230 0.62 -0.1 670,330 - IAI47_03230 0.62 +1.1 670,349 + IAI47_03230 0.64 +0.8 670,349 + IAI47_03230 0.64 -0.5 670,349 + IAI47_03230 0.64 +3.8 670,349 + IAI47_03230 0.64 +0.8 670,349 + IAI47_03230 0.64 -0.0 670,350 - IAI47_03230 0.65 +1.1 670,350 - IAI47_03230 0.65 -0.9 670,350 - IAI47_03230 0.65 +1.3 670,350 - IAI47_03230 0.65 -1.3 670,350 - IAI47_03230 0.65 +3.5 670,350 - IAI47_03230 0.65 -2.1 670,350 - IAI47_03230 0.65 +0.3 670,350 - IAI47_03230 0.65 +0.4 670,350 - IAI47_03230 0.65 +0.7 670,350 - IAI47_03230 0.65 +0.0 670,378 + IAI47_03230 0.67 +1.3 670,412 + IAI47_03230 0.71 +2.0 670,445 + IAI47_03230 0.74 -0.5 670,445 + IAI47_03230 0.74 -1.2 670,445 + IAI47_03230 0.74 -0.1 670,446 - IAI47_03230 0.74 +0.7 670,511 - IAI47_03230 0.81 +1.5 670,511 - IAI47_03230 0.81 +0.6 670,616 + +0.6 670,616 + +1.0 670,617 - +0.8 670,617 - +0.1 670,617 - -1.0 670,644 + +0.8 670,644 + -0.3 670,644 + +0.1 670,644 + -1.7 670,644 + +2.0 670,645 - -1.5 670,645 - -2.1 670,645 - -1.4 670,645 - -0.1 670,695 + -1.3 670,695 + +0.1 670,696 - -0.6 670,715 + -0.0 670,715 + -2.2 670,715 + -1.6 670,716 - -1.4 670,716 - +0.3 670,737 + -2.0 670,766 + +2.2 670,766 + +1.6 670,767 - +0.3 670,767 - -0.5 670,767 - -0.2 670,767 - -0.6 670,767 - +1.3 670,767 - -2.5 670,795 + +1.0 670,795 + -1.9 670,795 + +1.4 670,795 + -2.6 670,796 - -0.3 670,796 - -1.1 670,796 - +1.5 670,796 - +1.6 670,796 - -0.9 670,796 - -0.9 670,977 + +1.7 670,977 + +1.0 670,980 + -2.2 670,981 - -3.3 671,075 + -2.4 671,075 + -0.0 671,075 + -1.6 671,075 + -1.6 671,075 + -1.3 671,075 + -0.7 671,075 + -1.2 671,075 + -1.9 671,075 + +0.3 671,075 + +1.1 671,075 + -0.5 671,075 + +0.3 671,076 - -1.2 671,076 - -1.9 671,090 - -0.7 671,162 + IAI47_03235 0.16 +0.8 671,162 + IAI47_03235 0.16 -1.2 671,162 + IAI47_03235 0.16 -0.5 671,163 - IAI47_03235 0.16 -0.5 671,163 - IAI47_03235 0.16 -2.1 671,163 - IAI47_03235 0.16 +1.3 671,163 - IAI47_03235 0.16 +1.8 671,163 - IAI47_03235 0.16 -1.3 671,227 + IAI47_03235 0.25 -1.9 671,233 + IAI47_03235 0.26 +0.5 671,233 + IAI47_03235 0.26 -0.2 671,234 - IAI47_03235 0.26 -2.1 671,234 - IAI47_03235 0.26 -1.2 671,234 - IAI47_03235 0.26 +0.1 671,315 + IAI47_03235 0.37 -1.5 671,338 + IAI47_03235 0.41 -2.5 671,338 + IAI47_03235 0.41 +1.5 671,351 - IAI47_03235 0.42 +0.6 671,351 - IAI47_03235 0.42 -0.7 671,455 + IAI47_03235 0.57 -1.6 671,455 + IAI47_03235 0.57 -0.2 671,612 + IAI47_03235 0.78 -0.5 671,613 - IAI47_03235 0.79 -1.5 671,613 - IAI47_03235 0.79 -1.2 671,639 - IAI47_03235 0.82 +1.8 671,642 + IAI47_03235 0.83 -1.3 671,643 - IAI47_03235 0.83 -0.0 671,643 - IAI47_03235 0.83 -3.5 671,643 - IAI47_03235 0.83 -1.3 671,765 + -2.6 671,765 + -1.2 671,765 + -0.1 671,765 + +1.5 671,766 - -0.7 671,766 - -0.5 671,773 + -1.3 671,774 - -0.2 671,827 + IAI47_03240 0.13 +1.3 671,827 + IAI47_03240 0.13 -1.0 671,842 + IAI47_03240 0.16 -1.7 671,876 - IAI47_03240 0.24 +0.0 671,876 - IAI47_03240 0.24 -2.1 671,966 + IAI47_03240 0.45 -1.5 671,966 + IAI47_03240 0.45 -0.5 671,967 - IAI47_03240 0.46 -0.2 671,967 - IAI47_03240 0.46 -0.7 671,975 - IAI47_03240 0.48 -0.7 671,975 - IAI47_03240 0.48 +0.8 671,975 - IAI47_03240 0.48 +2.2 671,987 - IAI47_03240 0.50 -1.2 671,996 + IAI47_03240 0.52 -1.3 671,997 - IAI47_03240 0.53 -0.7 671,997 - IAI47_03240 0.53 +0.5 672,107 + IAI47_03240 0.79 -0.2 672,133 + IAI47_03240 0.85 -0.5 672,133 + IAI47_03240 0.85 +0.3 672,134 - IAI47_03240 0.85 -1.3 672,152 + IAI47_03240 0.89 +2.7 672,194 + +1.4 672,195 - +1.8 672,203 - -1.6 672,215 + +0.5 672,215 + +2.1 672,215 + -0.7 672,215 + -0.6 672,215 + -1.1 672,215 + +1.2 672,215 + +2.6 672,216 - -1.7 672,216 - -1.5 672,216 - +2.9 672,216 - +0.0 672,216 - +0.5 672,226 + +0.8 672,226 + +1.9 672,226 + -0.7 672,226 + +1.9 672,227 - +0.8 672,245 + +0.4 672,246 - +0.5 672,301 + -0.7 672,301 + -1.0 672,301 + +2.0 672,301 + +2.1 672,301 + -0.6 672,301 + -1.2 672,301 + +1.3 672,302 - -0.7 672,302 - +1.4 672,302 - -0.0 672,302 - -0.1 672,302 - +0.3 672,302 - -2.2 672,302 - -0.6 672,334 + -1.3 672,335 - -0.3 672,338 + +0.6 672,338 + -0.7 672,338 + -3.3 672,339 - +0.9 672,339 - +2.2 672,339 - +1.1 672,342 + -0.4 672,346 + +1.6 672,355 - -1.6 672,382 + +0.6 672,382 + +2.2 672,383 - -0.7 672,402 + +0.8 672,402 + -2.4 672,421 + +1.5 672,422 - +1.5 672,422 - +1.2 672,432 + -1.0 672,432 + -0.2 672,433 - +0.7 672,483 + -0.5 672,483 + -1.5 672,483 + +0.1 672,484 - -3.1 672,484 - +1.7 672,484 - +0.6 672,484 - -0.7 672,504 + -0.2 672,505 - -1.2 672,505 - +0.7 672,520 + -0.7 672,520 + -1.7 672,520 + -1.2 672,521 - -2.5 672,541 + -0.2 672,542 - -3.5 672,544 + -1.1 672,544 + +0.4 672,544 + +0.3 672,545 - +0.1 672,545 - -0.5 672,545 - +2.2 672,545 - +1.5 672,545 - +0.5 672,662 + IAI47_03245 0.17 -0.0 672,670 + IAI47_03245 0.18 +1.0 672,670 + IAI47_03245 0.18 +2.5 672,671 - IAI47_03245 0.18 -0.2 672,671 - IAI47_03245 0.18 +0.7 672,671 - IAI47_03245 0.18 -1.5 672,671 - IAI47_03245 0.18 +0.7 672,671 - IAI47_03245 0.18 +0.6 672,671 - IAI47_03245 0.18 -0.6 672,671 - IAI47_03245 0.18 +1.1 672,693 + IAI47_03245 0.20 -1.0 672,694 - IAI47_03245 0.20 -1.3 672,720 - IAI47_03245 0.22 +0.0 672,732 + IAI47_03245 0.23 -2.1 672,733 - IAI47_03245 0.23 +0.6 672,761 - IAI47_03245 0.25 -1.7 672,761 - IAI47_03245 0.25 +0.3 672,761 - IAI47_03245 0.25 -0.7 672,765 + IAI47_03245 0.25 -1.5 672,765 + IAI47_03245 0.25 +1.3 672,765 + IAI47_03245 0.25 +0.7 672,766 - IAI47_03245 0.25 -0.5 672,766 - IAI47_03245 0.25 +0.1
Or see this region's nucleotide sequence