Strain Fitness in Pantoea sp. MT58 around IAI47_00160

Experiment: Survival; Treatment=FW104 (pH 5); TreatmentDuration=0.5hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_00150 and IAI47_00155 are separated by 74 nucleotidesIAI47_00155 and IAI47_00160 are separated by 111 nucleotidesIAI47_00160 and IAI47_00165 overlap by 1 nucleotides IAI47_00150: IAI47_00150 - autotransporter, at 31,384 to 32,070 _00150 IAI47_00155: IAI47_00155 - hypothetical protein, at 32,145 to 32,825 _00155 IAI47_00160: IAI47_00160 - primosomal protein DnaT, at 32,937 to 33,473 _00160 IAI47_00165: IAI47_00165 - DNA replication protein DnaC, at 33,473 to 34,213 _00165 Position (kb) 32 33 34Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 32.023 kb on - strandat 32.041 kb on + strandat 32.041 kb on + strandat 32.042 kb on - strandat 32.042 kb on - strandat 32.043 kb on + strandat 32.044 kb on - strandat 32.044 kb on - strandat 32.068 kb on + strandat 32.068 kb on + strandat 32.069 kb on - strandat 32.069 kb on - strandat 32.078 kb on + strandat 32.078 kb on + strandat 32.104 kb on + strandat 32.109 kb on + strandat 32.145 kb on - strandat 32.145 kb on - strandat 32.165 kb on + strandat 32.165 kb on + strandat 32.165 kb on + strandat 32.166 kb on - strandat 32.166 kb on - strandat 32.166 kb on - strandat 32.166 kb on - strandat 32.166 kb on - strandat 32.219 kb on + strand, within IAI47_00155at 32.220 kb on - strand, within IAI47_00155at 32.232 kb on + strand, within IAI47_00155at 32.232 kb on + strand, within IAI47_00155at 32.232 kb on + strand, within IAI47_00155at 32.232 kb on + strand, within IAI47_00155at 32.232 kb on + strand, within IAI47_00155at 32.232 kb on + strand, within IAI47_00155at 32.233 kb on - strand, within IAI47_00155at 32.233 kb on - strand, within IAI47_00155at 32.233 kb on - strand, within IAI47_00155at 32.233 kb on - strand, within IAI47_00155at 32.279 kb on + strand, within IAI47_00155at 32.279 kb on + strand, within IAI47_00155at 32.331 kb on - strand, within IAI47_00155at 32.331 kb on - strand, within IAI47_00155at 32.374 kb on + strand, within IAI47_00155at 32.374 kb on + strand, within IAI47_00155at 32.375 kb on - strand, within IAI47_00155at 32.375 kb on - strand, within IAI47_00155at 32.375 kb on - strand, within IAI47_00155at 32.388 kb on + strand, within IAI47_00155at 32.388 kb on + strand, within IAI47_00155at 32.389 kb on - strand, within IAI47_00155at 32.389 kb on - strand, within IAI47_00155at 32.389 kb on - strand, within IAI47_00155at 32.429 kb on + strand, within IAI47_00155at 32.578 kb on + strand, within IAI47_00155at 32.578 kb on + strand, within IAI47_00155at 32.579 kb on - strand, within IAI47_00155at 32.646 kb on + strand, within IAI47_00155at 32.646 kb on + strand, within IAI47_00155at 32.646 kb on + strand, within IAI47_00155at 32.646 kb on + strand, within IAI47_00155at 32.646 kb on + strand, within IAI47_00155at 32.646 kb on + strand, within IAI47_00155at 32.646 kb on + strand, within IAI47_00155at 32.646 kb on + strand, within IAI47_00155at 32.647 kb on - strand, within IAI47_00155at 32.647 kb on - strand, within IAI47_00155at 32.697 kb on + strand, within IAI47_00155at 32.698 kb on - strand, within IAI47_00155at 32.698 kb on - strand, within IAI47_00155at 32.727 kb on + strand, within IAI47_00155at 32.728 kb on - strand, within IAI47_00155at 32.728 kb on - strand, within IAI47_00155at 32.860 kb on + strandat 32.861 kb on - strandat 32.869 kb on + strandat 32.869 kb on - strandat 32.870 kb on - strandat 32.874 kb on + strandat 32.874 kb on + strandat 32.874 kb on + strandat 32.874 kb on + strandat 32.874 kb on + strandat 32.874 kb on + strandat 32.874 kb on + strandat 32.874 kb on + strandat 32.874 kb on + strandat 34.211 kb on + strandat 34.212 kb on - strandat 34.212 kb on - strandat 34.212 kb on - strandat 34.212 kb on - strandat 34.212 kb on - strandat 34.212 kb on - strandat 34.245 kb on + strandat 34.245 kb on + strandat 34.245 kb on + strandat 34.357 kb on - strandat 34.375 kb on + strandat 34.375 kb on + strandat 34.376 kb on - strandat 34.376 kb on - strandat 34.376 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=FW104 (pH 5); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
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32,023 - -0.2
32,041 + +1.3
32,041 + +0.9
32,042 - +1.3
32,042 - -1.8
32,043 + -0.6
32,044 - +1.1
32,044 - -1.0
32,068 + -1.1
32,068 + -0.6
32,069 - -0.5
32,069 - -1.1
32,078 + -0.5
32,078 + -2.7
32,104 + -1.4
32,109 + +0.4
32,145 - +1.3
32,145 - -0.8
32,165 + -3.0
32,165 + -2.0
32,165 + +1.4
32,166 - -0.6
32,166 - +2.4
32,166 - -1.4
32,166 - -0.3
32,166 - +1.2
32,219 + IAI47_00155 0.11 -0.8
32,220 - IAI47_00155 0.11 +0.1
32,232 + IAI47_00155 0.13 +2.0
32,232 + IAI47_00155 0.13 -0.5
32,232 + IAI47_00155 0.13 +1.2
32,232 + IAI47_00155 0.13 -1.1
32,232 + IAI47_00155 0.13 +0.4
32,232 + IAI47_00155 0.13 +2.2
32,233 - IAI47_00155 0.13 -0.7
32,233 - IAI47_00155 0.13 +1.5
32,233 - IAI47_00155 0.13 -1.1
32,233 - IAI47_00155 0.13 +1.5
32,279 + IAI47_00155 0.20 +1.6
32,279 + IAI47_00155 0.20 +0.7
32,331 - IAI47_00155 0.27 +1.9
32,331 - IAI47_00155 0.27 -0.4
32,374 + IAI47_00155 0.34 +0.1
32,374 + IAI47_00155 0.34 +1.9
32,375 - IAI47_00155 0.34 +1.9
32,375 - IAI47_00155 0.34 +0.5
32,375 - IAI47_00155 0.34 -1.0
32,388 + IAI47_00155 0.36 -0.7
32,388 + IAI47_00155 0.36 -1.7
32,389 - IAI47_00155 0.36 -0.5
32,389 - IAI47_00155 0.36 -1.3
32,389 - IAI47_00155 0.36 +0.2
32,429 + IAI47_00155 0.42 +1.3
32,578 + IAI47_00155 0.64 -1.1
32,578 + IAI47_00155 0.64 -0.8
32,579 - IAI47_00155 0.64 -0.6
32,646 + IAI47_00155 0.74 +3.1
32,646 + IAI47_00155 0.74 -1.4
32,646 + IAI47_00155 0.74 -0.2
32,646 + IAI47_00155 0.74 -1.1
32,646 + IAI47_00155 0.74 -2.2
32,646 + IAI47_00155 0.74 -0.4
32,646 + IAI47_00155 0.74 -2.1
32,646 + IAI47_00155 0.74 +0.1
32,647 - IAI47_00155 0.74 -2.7
32,647 - IAI47_00155 0.74 -0.7
32,697 + IAI47_00155 0.81 -1.3
32,698 - IAI47_00155 0.81 -1.1
32,698 - IAI47_00155 0.81 -1.8
32,727 + IAI47_00155 0.85 -0.4
32,728 - IAI47_00155 0.86 -0.7
32,728 - IAI47_00155 0.86 -1.1
32,860 + +0.7
32,861 - -2.1
32,869 + +0.9
32,869 - -0.2
32,870 - +0.6
32,874 + +1.5
32,874 + -2.6
32,874 + +2.2
32,874 + +0.6
32,874 + -0.5
32,874 + +0.7
32,874 + +0.9
32,874 + -2.4
32,874 + +0.5
34,211 + +0.1
34,212 - +0.3
34,212 - -0.6
34,212 - -1.3
34,212 - +3.2
34,212 - +0.5
34,212 - -3.6
34,245 + +2.3
34,245 + -1.5
34,245 + -0.4
34,357 - -0.6
34,375 + +1.6
34,375 + -2.1
34,376 - -2.6
34,376 - +1.2
34,376 - -1.3

Or see this region's nucleotide sequence