Experiment: LB_Anaerobic_60MIN_ZN4B
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_18940 and CSW01_18945 are separated by 100 nucleotides CSW01_18945 and CSW01_18950 are separated by 151 nucleotides
CSW01_18940: CSW01_18940 - EamA family transporter, at 910,512 to 911,435
_18940
CSW01_18945: CSW01_18945 - LysR family transcriptional regulator, at 911,536 to 912,441
_18945
CSW01_18950: CSW01_18950 - GGDEF domain-containing protein, at 912,593 to 913,783
_18950
Position (kb) 911
912
913 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 910.543 kb on + strand at 910.551 kb on - strand at 910.583 kb on - strand at 910.651 kb on + strand, within CSW01_18940 at 910.659 kb on - strand, within CSW01_18940 at 910.659 kb on - strand, within CSW01_18940 at 910.659 kb on - strand, within CSW01_18940 at 910.756 kb on + strand, within CSW01_18940 at 910.759 kb on - strand, within CSW01_18940 at 910.808 kb on + strand, within CSW01_18940 at 910.816 kb on - strand, within CSW01_18940 at 910.816 kb on - strand, within CSW01_18940 at 910.920 kb on + strand, within CSW01_18940 at 910.925 kb on + strand, within CSW01_18940 at 910.928 kb on - strand, within CSW01_18940 at 910.962 kb on + strand, within CSW01_18940 at 910.970 kb on - strand, within CSW01_18940 at 910.974 kb on + strand, within CSW01_18940 at 910.974 kb on + strand, within CSW01_18940 at 910.975 kb on - strand, within CSW01_18940 at 911.061 kb on + strand, within CSW01_18940 at 911.116 kb on + strand, within CSW01_18940 at 911.116 kb on + strand, within CSW01_18940 at 911.132 kb on - strand, within CSW01_18940 at 911.134 kb on + strand, within CSW01_18940 at 911.134 kb on + strand, within CSW01_18940 at 911.134 kb on + strand, within CSW01_18940 at 911.134 kb on + strand, within CSW01_18940 at 911.134 kb on + strand, within CSW01_18940 at 911.137 kb on - strand, within CSW01_18940 at 911.142 kb on - strand, within CSW01_18940 at 911.142 kb on - strand, within CSW01_18940 at 911.147 kb on - strand, within CSW01_18940 at 911.169 kb on + strand, within CSW01_18940 at 911.188 kb on + strand, within CSW01_18940 at 911.440 kb on - strand at 911.445 kb on - strand at 911.591 kb on - strand at 911.605 kb on - strand at 911.605 kb on - strand at 911.716 kb on - strand, within CSW01_18945 at 911.721 kb on - strand, within CSW01_18945 at 911.721 kb on - strand, within CSW01_18945 at 911.806 kb on - strand, within CSW01_18945 at 911.853 kb on - strand, within CSW01_18945 at 911.905 kb on - strand, within CSW01_18945 at 911.997 kb on + strand, within CSW01_18945 at 912.005 kb on - strand, within CSW01_18945 at 912.010 kb on + strand, within CSW01_18945 at 912.076 kb on - strand, within CSW01_18945 at 912.173 kb on + strand, within CSW01_18945 at 912.181 kb on - strand, within CSW01_18945 at 912.254 kb on + strand, within CSW01_18945 at 912.277 kb on + strand, within CSW01_18945 at 912.312 kb on + strand, within CSW01_18945 at 912.312 kb on + strand, within CSW01_18945 at 912.312 kb on + strand, within CSW01_18945 at 912.312 kb on + strand, within CSW01_18945 at 912.312 kb on + strand, within CSW01_18945 at 912.312 kb on + strand, within CSW01_18945 at 912.320 kb on - strand, within CSW01_18945 at 912.320 kb on - strand, within CSW01_18945 at 912.320 kb on - strand, within CSW01_18945 at 912.320 kb on - strand, within CSW01_18945 at 912.320 kb on - strand, within CSW01_18945 at 912.353 kb on + strand at 912.387 kb on - strand at 912.392 kb on + strand at 912.396 kb on - strand at 912.491 kb on + strand at 912.615 kb on + strand at 912.650 kb on - strand at 912.677 kb on + strand at 912.677 kb on + strand at 912.677 kb on + strand at 912.677 kb on + strand at 912.677 kb on + strand at 912.677 kb on + strand at 912.677 kb on + strand at 912.677 kb on + strand at 912.677 kb on + strand at 912.680 kb on - strand at 912.682 kb on + strand at 912.685 kb on - strand at 912.685 kb on - strand at 912.687 kb on + strand at 912.687 kb on + strand at 912.687 kb on + strand at 912.687 kb on + strand at 912.687 kb on + strand at 912.687 kb on + strand at 912.687 kb on + strand at 912.687 kb on + strand at 912.690 kb on - strand at 912.695 kb on - strand at 912.695 kb on - strand at 912.695 kb on - strand at 912.695 kb on - strand at 912.695 kb on - strand at 912.695 kb on - strand at 912.695 kb on - strand at 912.695 kb on - strand at 912.695 kb on - strand at 912.695 kb on - strand at 912.695 kb on - strand at 912.695 kb on - strand at 912.725 kb on + strand, within CSW01_18950 at 912.743 kb on + strand, within CSW01_18950 at 912.751 kb on - strand, within CSW01_18950 at 912.757 kb on - strand, within CSW01_18950 at 912.769 kb on + strand, within CSW01_18950 at 912.832 kb on + strand, within CSW01_18950 at 912.870 kb on + strand, within CSW01_18950 at 912.870 kb on + strand, within CSW01_18950 at 912.870 kb on + strand, within CSW01_18950 at 912.870 kb on + strand, within CSW01_18950 at 912.870 kb on + strand, within CSW01_18950 at 912.870 kb on + strand, within CSW01_18950 at 912.870 kb on + strand, within CSW01_18950 at 912.870 kb on + strand, within CSW01_18950 at 912.878 kb on - strand, within CSW01_18950 at 912.878 kb on - strand, within CSW01_18950 at 912.878 kb on - strand, within CSW01_18950 at 912.878 kb on - strand, within CSW01_18950 at 912.878 kb on - strand, within CSW01_18950 at 912.878 kb on - strand, within CSW01_18950 at 912.878 kb on - strand, within CSW01_18950 at 912.878 kb on - strand, within CSW01_18950 at 912.878 kb on - strand, within CSW01_18950 at 912.878 kb on - strand, within CSW01_18950 at 912.881 kb on + strand, within CSW01_18950 at 912.886 kb on + strand, within CSW01_18950 at 912.886 kb on + strand, within CSW01_18950 at 912.888 kb on - strand, within CSW01_18950 at 912.889 kb on + strand, within CSW01_18950 at 912.889 kb on - strand, within CSW01_18950 at 912.891 kb on + strand, within CSW01_18950 at 912.891 kb on + strand, within CSW01_18950 at 912.891 kb on + strand, within CSW01_18950 at 912.899 kb on - strand, within CSW01_18950 at 912.901 kb on + strand, within CSW01_18950 at 912.901 kb on + strand, within CSW01_18950 at 912.909 kb on - strand, within CSW01_18950 at 912.924 kb on + strand, within CSW01_18950 at 912.927 kb on - strand, within CSW01_18950 at 912.932 kb on - strand, within CSW01_18950 at 912.942 kb on + strand, within CSW01_18950 at 912.950 kb on - strand, within CSW01_18950 at 912.954 kb on + strand, within CSW01_18950 at 912.955 kb on + strand, within CSW01_18950 at 912.955 kb on + strand, within CSW01_18950 at 912.963 kb on - strand, within CSW01_18950 at 912.963 kb on - strand, within CSW01_18950 at 912.963 kb on - strand, within CSW01_18950 at 912.974 kb on + strand, within CSW01_18950 at 912.979 kb on + strand, within CSW01_18950 at 912.979 kb on + strand, within CSW01_18950 at 912.979 kb on + strand, within CSW01_18950 at 912.979 kb on + strand, within CSW01_18950 at 912.979 kb on + strand, within CSW01_18950 at 912.979 kb on + strand, within CSW01_18950 at 912.987 kb on + strand, within CSW01_18950 at 912.987 kb on + strand, within CSW01_18950 at 912.987 kb on + strand, within CSW01_18950 at 912.987 kb on - strand, within CSW01_18950 at 912.992 kb on + strand, within CSW01_18950 at 912.995 kb on - strand, within CSW01_18950 at 912.995 kb on - strand, within CSW01_18950 at 913.000 kb on - strand, within CSW01_18950 at 913.000 kb on - strand, within CSW01_18950 at 913.000 kb on - strand, within CSW01_18950 at 913.007 kb on - strand, within CSW01_18950 at 913.014 kb on + strand, within CSW01_18950 at 913.022 kb on - strand, within CSW01_18950 at 913.022 kb on - strand, within CSW01_18950 at 913.045 kb on + strand, within CSW01_18950 at 913.053 kb on + strand, within CSW01_18950 at 913.053 kb on + strand, within CSW01_18950 at 913.053 kb on - strand, within CSW01_18950 at 913.061 kb on - strand, within CSW01_18950 at 913.061 kb on - strand, within CSW01_18950 at 913.061 kb on - strand, within CSW01_18950 at 913.061 kb on - strand, within CSW01_18950 at 913.061 kb on - strand, within CSW01_18950 at 913.066 kb on - strand, within CSW01_18950 at 913.102 kb on + strand, within CSW01_18950 at 913.110 kb on - strand, within CSW01_18950 at 913.110 kb on - strand, within CSW01_18950 at 913.167 kb on + strand, within CSW01_18950 at 913.169 kb on + strand, within CSW01_18950 at 913.175 kb on - strand, within CSW01_18950 at 913.180 kb on + strand, within CSW01_18950 at 913.180 kb on + strand, within CSW01_18950 at 913.180 kb on + strand, within CSW01_18950 at 913.188 kb on - strand, within CSW01_18950 at 913.188 kb on - strand, within CSW01_18950 at 913.188 kb on - strand, within CSW01_18950 at 913.188 kb on - strand, within CSW01_18950 at 913.188 kb on - strand, within CSW01_18950 at 913.202 kb on + strand, within CSW01_18950 at 913.210 kb on - strand, within CSW01_18950 at 913.214 kb on + strand, within CSW01_18950 at 913.253 kb on + strand, within CSW01_18950 at 913.272 kb on + strand, within CSW01_18950 at 913.280 kb on - strand, within CSW01_18950 at 913.332 kb on + strand, within CSW01_18950 at 913.332 kb on + strand, within CSW01_18950 at 913.332 kb on + strand, within CSW01_18950 at 913.332 kb on + strand, within CSW01_18950 at 913.332 kb on + strand, within CSW01_18950 at 913.332 kb on + strand, within CSW01_18950 at 913.332 kb on + strand, within CSW01_18950 at 913.332 kb on + strand, within CSW01_18950 at 913.332 kb on + strand, within CSW01_18950 at 913.332 kb on + strand, within CSW01_18950 at 913.340 kb on - strand, within CSW01_18950 at 913.340 kb on - strand, within CSW01_18950 at 913.340 kb on - strand, within CSW01_18950 at 913.340 kb on - strand, within CSW01_18950 at 913.340 kb on - strand, within CSW01_18950
Per-strain Table
Position Strand Gene LocusTag Fraction LB_Anaerobic_60MIN_ZN4B remove 910,543 + -0.6 910,551 - -0.1 910,583 - +0.1 910,651 + CSW01_18940 0.15 +0.7 910,659 - CSW01_18940 0.16 -3.3 910,659 - CSW01_18940 0.16 -0.3 910,659 - CSW01_18940 0.16 -1.2 910,756 + CSW01_18940 0.26 -0.4 910,759 - CSW01_18940 0.27 +1.2 910,808 + CSW01_18940 0.32 -0.5 910,816 - CSW01_18940 0.33 +1.4 910,816 - CSW01_18940 0.33 -3.5 910,920 + CSW01_18940 0.44 -0.9 910,925 + CSW01_18940 0.45 +0.4 910,928 - CSW01_18940 0.45 +0.1 910,962 + CSW01_18940 0.49 +0.3 910,970 - CSW01_18940 0.50 -1.3 910,974 + CSW01_18940 0.50 +0.7 910,974 + CSW01_18940 0.50 +1.1 910,975 - CSW01_18940 0.50 -0.6 911,061 + CSW01_18940 0.59 +0.3 911,116 + CSW01_18940 0.65 +0.9 911,116 + CSW01_18940 0.65 -0.3 911,132 - CSW01_18940 0.67 -0.1 911,134 + CSW01_18940 0.67 -2.6 911,134 + CSW01_18940 0.67 +0.4 911,134 + CSW01_18940 0.67 -1.5 911,134 + CSW01_18940 0.67 +0.3 911,134 + CSW01_18940 0.67 +0.6 911,137 - CSW01_18940 0.68 +0.3 911,142 - CSW01_18940 0.68 -1.6 911,142 - CSW01_18940 0.68 -0.4 911,147 - CSW01_18940 0.69 -1.0 911,169 + CSW01_18940 0.71 +1.6 911,188 + CSW01_18940 0.73 -0.2 911,440 - -0.2 911,445 - -1.1 911,591 - -0.2 911,605 - -0.3 911,605 - +1.3 911,716 - CSW01_18945 0.20 -0.4 911,721 - CSW01_18945 0.20 +1.3 911,721 - CSW01_18945 0.20 -3.1 911,806 - CSW01_18945 0.30 +0.5 911,853 - CSW01_18945 0.35 +0.5 911,905 - CSW01_18945 0.41 -0.2 911,997 + CSW01_18945 0.51 -1.7 912,005 - CSW01_18945 0.52 +0.7 912,010 + CSW01_18945 0.52 +1.0 912,076 - CSW01_18945 0.60 -0.1 912,173 + CSW01_18945 0.70 -0.0 912,181 - CSW01_18945 0.71 -0.9 912,254 + CSW01_18945 0.79 +0.4 912,277 + CSW01_18945 0.82 -1.3 912,312 + CSW01_18945 0.86 +0.6 912,312 + CSW01_18945 0.86 +0.2 912,312 + CSW01_18945 0.86 -0.4 912,312 + CSW01_18945 0.86 +0.2 912,312 + CSW01_18945 0.86 +0.2 912,312 + CSW01_18945 0.86 +0.8 912,320 - CSW01_18945 0.87 -0.2 912,320 - CSW01_18945 0.87 -0.9 912,320 - CSW01_18945 0.87 -0.1 912,320 - CSW01_18945 0.87 -1.3 912,320 - CSW01_18945 0.87 -0.2 912,353 + +0.0 912,387 - +0.9 912,392 + -0.9 912,396 - +0.6 912,491 + -0.8 912,615 + +2.1 912,650 - -0.1 912,677 + -1.0 912,677 + -0.3 912,677 + -0.4 912,677 + -0.0 912,677 + +0.2 912,677 + -1.0 912,677 + -0.2 912,677 + -0.7 912,677 + -0.3 912,680 - -0.1 912,682 + +0.0 912,685 - -1.3 912,685 - -0.2 912,687 + +1.6 912,687 + -0.2 912,687 + -0.3 912,687 + +2.0 912,687 + -0.7 912,687 + -0.9 912,687 + -0.0 912,687 + -0.5 912,690 - -0.6 912,695 - +0.6 912,695 - +0.4 912,695 - +0.4 912,695 - -0.0 912,695 - +0.1 912,695 - -0.2 912,695 - -2.5 912,695 - -0.9 912,695 - -0.2 912,695 - -3.1 912,695 - -2.9 912,695 - -0.3 912,725 + CSW01_18950 0.11 +0.8 912,743 + CSW01_18950 0.13 -0.5 912,751 - CSW01_18950 0.13 +1.6 912,757 - CSW01_18950 0.14 +1.0 912,769 + CSW01_18950 0.15 +0.1 912,832 + CSW01_18950 0.20 -0.8 912,870 + CSW01_18950 0.23 -3.6 912,870 + CSW01_18950 0.23 -1.4 912,870 + CSW01_18950 0.23 -0.1 912,870 + CSW01_18950 0.23 -0.4 912,870 + CSW01_18950 0.23 +0.3 912,870 + CSW01_18950 0.23 -2.1 912,870 + CSW01_18950 0.23 -3.1 912,870 + CSW01_18950 0.23 +0.3 912,878 - CSW01_18950 0.24 -0.5 912,878 - CSW01_18950 0.24 +0.0 912,878 - CSW01_18950 0.24 +0.9 912,878 - CSW01_18950 0.24 -0.3 912,878 - CSW01_18950 0.24 -0.7 912,878 - CSW01_18950 0.24 -0.4 912,878 - CSW01_18950 0.24 -0.3 912,878 - CSW01_18950 0.24 -1.2 912,878 - CSW01_18950 0.24 +0.4 912,878 - CSW01_18950 0.24 +0.5 912,881 + CSW01_18950 0.24 -0.1 912,886 + CSW01_18950 0.25 -0.1 912,886 + CSW01_18950 0.25 +1.2 912,888 - CSW01_18950 0.25 -1.1 912,889 + CSW01_18950 0.25 -0.1 912,889 - CSW01_18950 0.25 +0.9 912,891 + CSW01_18950 0.25 +0.4 912,891 + CSW01_18950 0.25 -0.7 912,891 + CSW01_18950 0.25 +0.3 912,899 - CSW01_18950 0.26 -2.9 912,901 + CSW01_18950 0.26 +0.8 912,901 + CSW01_18950 0.26 -0.3 912,909 - CSW01_18950 0.27 -0.9 912,924 + CSW01_18950 0.28 +1.6 912,927 - CSW01_18950 0.28 -0.1 912,932 - CSW01_18950 0.28 +0.6 912,942 + CSW01_18950 0.29 -1.0 912,950 - CSW01_18950 0.30 -1.0 912,954 + CSW01_18950 0.30 -0.7 912,955 + CSW01_18950 0.30 +0.4 912,955 + CSW01_18950 0.30 -2.5 912,963 - CSW01_18950 0.31 +0.5 912,963 - CSW01_18950 0.31 -0.5 912,963 - CSW01_18950 0.31 -1.6 912,974 + CSW01_18950 0.32 -0.2 912,979 + CSW01_18950 0.32 -0.0 912,979 + CSW01_18950 0.32 -0.1 912,979 + CSW01_18950 0.32 +0.4 912,979 + CSW01_18950 0.32 +0.6 912,979 + CSW01_18950 0.32 +0.6 912,979 + CSW01_18950 0.32 -1.0 912,987 + CSW01_18950 0.33 +1.3 912,987 + CSW01_18950 0.33 -0.4 912,987 + CSW01_18950 0.33 -0.3 912,987 - CSW01_18950 0.33 +0.9 912,992 + CSW01_18950 0.34 -0.9 912,995 - CSW01_18950 0.34 +0.4 912,995 - CSW01_18950 0.34 -0.7 913,000 - CSW01_18950 0.34 +0.1 913,000 - CSW01_18950 0.34 -1.7 913,000 - CSW01_18950 0.34 +0.2 913,007 - CSW01_18950 0.35 -1.6 913,014 + CSW01_18950 0.35 -0.1 913,022 - CSW01_18950 0.36 -0.9 913,022 - CSW01_18950 0.36 -0.2 913,045 + CSW01_18950 0.38 -0.2 913,053 + CSW01_18950 0.39 -0.8 913,053 + CSW01_18950 0.39 -0.7 913,053 - CSW01_18950 0.39 +0.6 913,061 - CSW01_18950 0.39 +1.4 913,061 - CSW01_18950 0.39 -1.3 913,061 - CSW01_18950 0.39 +2.1 913,061 - CSW01_18950 0.39 +1.0 913,061 - CSW01_18950 0.39 +0.3 913,066 - CSW01_18950 0.40 -0.5 913,102 + CSW01_18950 0.43 -2.2 913,110 - CSW01_18950 0.43 -2.1 913,110 - CSW01_18950 0.43 +0.5 913,167 + CSW01_18950 0.48 +0.1 913,169 + CSW01_18950 0.48 -0.4 913,175 - CSW01_18950 0.49 -0.2 913,180 + CSW01_18950 0.49 +0.6 913,180 + CSW01_18950 0.49 +0.8 913,180 + CSW01_18950 0.49 -1.2 913,188 - CSW01_18950 0.50 -1.7 913,188 - CSW01_18950 0.50 -3.1 913,188 - CSW01_18950 0.50 +0.5 913,188 - CSW01_18950 0.50 +0.5 913,188 - CSW01_18950 0.50 +0.2 913,202 + CSW01_18950 0.51 -0.3 913,210 - CSW01_18950 0.52 -2.7 913,214 + CSW01_18950 0.52 +0.9 913,253 + CSW01_18950 0.55 -0.9 913,272 + CSW01_18950 0.57 +0.4 913,280 - CSW01_18950 0.58 -0.2 913,332 + CSW01_18950 0.62 -0.3 913,332 + CSW01_18950 0.62 -0.7 913,332 + CSW01_18950 0.62 +0.4 913,332 + CSW01_18950 0.62 +0.6 913,332 + CSW01_18950 0.62 -0.3 913,332 + CSW01_18950 0.62 +0.3 913,332 + CSW01_18950 0.62 +0.9 913,332 + CSW01_18950 0.62 +1.3 913,332 + CSW01_18950 0.62 -0.0 913,332 + CSW01_18950 0.62 -0.7 913,340 - CSW01_18950 0.63 -1.5 913,340 - CSW01_18950 0.63 +1.3 913,340 - CSW01_18950 0.63 +0.8 913,340 - CSW01_18950 0.63 -0.5 913,340 - CSW01_18950 0.63 +0.1
Or see this region's nucleotide sequence