Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18895

Experiment: LB_Anaerobic_60MIN_ZN4B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18890 and CSW01_18895 are separated by 174 nucleotidesCSW01_18895 and CSW01_18900 are separated by 75 nucleotidesCSW01_18900 and CSW01_18905 are separated by 168 nucleotides CSW01_18890: CSW01_18890 - peptidyl-prolyl cis-trans isomerase, at 900,865 to 901,143 _18890 CSW01_18895: CSW01_18895 - chemotaxis protein CheV, at 901,318 to 902,238 _18895 CSW01_18900: CSW01_18900 - MarR family transcriptional regulator, at 902,314 to 902,838 _18900 CSW01_18905: CSW01_18905 - GGDEF domain-containing protein, at 903,007 to 904,026 _18905 Position (kb) 901 902 903Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 900.319 kb on + strandat 900.319 kb on + strandat 900.319 kb on + strandat 900.319 kb on + strandat 900.352 kb on - strandat 900.525 kb on + strandat 900.576 kb on - strandat 900.713 kb on + strandat 900.713 kb on + strandat 900.713 kb on + strandat 900.713 kb on + strandat 900.714 kb on + strandat 900.721 kb on - strandat 900.721 kb on - strandat 900.727 kb on + strandat 900.729 kb on + strandat 900.735 kb on - strandat 900.770 kb on + strandat 900.778 kb on - strandat 900.778 kb on - strandat 900.778 kb on - strandat 900.789 kb on + strandat 900.800 kb on + strandat 900.800 kb on + strandat 900.800 kb on + strandat 900.808 kb on - strandat 900.813 kb on + strandat 900.813 kb on + strandat 900.813 kb on + strandat 900.815 kb on + strandat 900.815 kb on + strandat 900.815 kb on + strandat 900.821 kb on - strandat 900.821 kb on - strandat 900.823 kb on - strandat 900.842 kb on - strandat 900.918 kb on + strand, within CSW01_18890at 900.918 kb on + strand, within CSW01_18890at 900.921 kb on - strand, within CSW01_18890at 900.921 kb on - strand, within CSW01_18890at 900.978 kb on - strand, within CSW01_18890at 901.025 kb on + strand, within CSW01_18890at 901.033 kb on - strand, within CSW01_18890at 901.033 kb on - strand, within CSW01_18890at 901.095 kb on + strand, within CSW01_18890at 901.106 kb on - strand, within CSW01_18890at 901.133 kb on - strandat 901.207 kb on + strandat 901.282 kb on + strandat 901.293 kb on + strandat 901.376 kb on + strandat 901.376 kb on + strandat 901.376 kb on + strandat 901.384 kb on - strandat 901.384 kb on - strandat 901.384 kb on - strandat 901.452 kb on + strand, within CSW01_18895at 901.489 kb on - strand, within CSW01_18895at 901.600 kb on - strand, within CSW01_18895at 901.758 kb on - strand, within CSW01_18895at 901.842 kb on - strand, within CSW01_18895at 901.879 kb on - strand, within CSW01_18895at 901.891 kb on + strand, within CSW01_18895at 902.143 kb on + strand, within CSW01_18895at 902.262 kb on - strandat 902.319 kb on - strandat 902.320 kb on - strandat 902.322 kb on + strandat 902.322 kb on + strandat 902.489 kb on + strand, within CSW01_18900at 902.489 kb on + strand, within CSW01_18900at 902.497 kb on - strand, within CSW01_18900at 902.518 kb on - strand, within CSW01_18900at 902.544 kb on + strand, within CSW01_18900at 902.576 kb on - strand, within CSW01_18900at 902.589 kb on + strand, within CSW01_18900at 902.589 kb on + strand, within CSW01_18900at 902.589 kb on + strand, within CSW01_18900at 902.597 kb on - strand, within CSW01_18900at 902.597 kb on - strand, within CSW01_18900at 902.597 kb on - strand, within CSW01_18900at 902.597 kb on - strand, within CSW01_18900at 902.597 kb on - strand, within CSW01_18900at 902.597 kb on - strand, within CSW01_18900at 902.628 kb on + strand, within CSW01_18900at 902.628 kb on + strand, within CSW01_18900at 902.635 kb on - strand, within CSW01_18900at 902.654 kb on - strand, within CSW01_18900at 902.663 kb on + strand, within CSW01_18900at 902.682 kb on + strand, within CSW01_18900at 902.782 kb on + strand, within CSW01_18900at 902.807 kb on - strandat 902.841 kb on + strandat 902.861 kb on + strandat 902.874 kb on + strandat 902.920 kb on - strandat 902.922 kb on - strandat 903.114 kb on + strand, within CSW01_18905

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_60MIN_ZN4B
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900,319 + +0.9
900,319 + -0.1
900,319 + -1.2
900,319 + -1.0
900,352 - -1.4
900,525 + +0.6
900,576 - +0.1
900,713 + -0.9
900,713 + -0.9
900,713 + -0.9
900,713 + +1.4
900,714 + +1.7
900,721 - +1.2
900,721 - +0.2
900,727 + +0.4
900,729 + +0.3
900,735 - -0.0
900,770 + -0.2
900,778 - -0.4
900,778 - -2.4
900,778 - +0.7
900,789 + +0.1
900,800 + -2.9
900,800 + +0.3
900,800 + +0.0
900,808 - -0.4
900,813 + -0.3
900,813 + -1.3
900,813 + +1.3
900,815 + +1.6
900,815 + +0.3
900,815 + +0.3
900,821 - +1.8
900,821 - +0.1
900,823 - +0.0
900,842 - -0.0
900,918 + CSW01_18890 0.19 +0.3
900,918 + CSW01_18890 0.19 -1.2
900,921 - CSW01_18890 0.20 +1.4
900,921 - CSW01_18890 0.20 +0.7
900,978 - CSW01_18890 0.41 +0.7
901,025 + CSW01_18890 0.57 +0.3
901,033 - CSW01_18890 0.60 +0.3
901,033 - CSW01_18890 0.60 -0.6
901,095 + CSW01_18890 0.82 -0.2
901,106 - CSW01_18890 0.86 +0.3
901,133 - +0.8
901,207 + +1.3
901,282 + -0.1
901,293 + -0.7
901,376 + -1.6
901,376 + +0.6
901,376 + +1.1
901,384 - +0.7
901,384 - -2.3
901,384 - -0.8
901,452 + CSW01_18895 0.15 +0.3
901,489 - CSW01_18895 0.19 +0.3
901,600 - CSW01_18895 0.31 +0.2
901,758 - CSW01_18895 0.48 -0.5
901,842 - CSW01_18895 0.57 -2.7
901,879 - CSW01_18895 0.61 -2.7
901,891 + CSW01_18895 0.62 +0.4
902,143 + CSW01_18895 0.90 +0.9
902,262 - -0.3
902,319 - +0.5
902,320 - -0.4
902,322 + +0.3
902,322 + -0.5
902,489 + CSW01_18900 0.33 +2.4
902,489 + CSW01_18900 0.33 -0.4
902,497 - CSW01_18900 0.35 +0.1
902,518 - CSW01_18900 0.39 +2.1
902,544 + CSW01_18900 0.44 -1.7
902,576 - CSW01_18900 0.50 +0.2
902,589 + CSW01_18900 0.52 +0.3
902,589 + CSW01_18900 0.52 -0.5
902,589 + CSW01_18900 0.52 -2.5
902,597 - CSW01_18900 0.54 +2.1
902,597 - CSW01_18900 0.54 +0.5
902,597 - CSW01_18900 0.54 -1.9
902,597 - CSW01_18900 0.54 +0.6
902,597 - CSW01_18900 0.54 -1.4
902,597 - CSW01_18900 0.54 -1.1
902,628 + CSW01_18900 0.60 -1.3
902,628 + CSW01_18900 0.60 -0.4
902,635 - CSW01_18900 0.61 -0.2
902,654 - CSW01_18900 0.65 +0.3
902,663 + CSW01_18900 0.66 +1.1
902,682 + CSW01_18900 0.70 -0.0
902,782 + CSW01_18900 0.89 +1.2
902,807 - +2.6
902,841 + +0.0
902,861 + +0.3
902,874 + -0.7
902,920 - +1.8
902,922 - -0.0
903,114 + CSW01_18905 0.10 +1.4

Or see this region's nucleotide sequence