Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18810

Experiment: LB_Anaerobic_60MIN_ZN4B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18800 and CSW01_18805 are separated by 182 nucleotidesCSW01_18805 and CSW01_18810 are separated by 211 nucleotidesCSW01_18810 and CSW01_18815 overlap by 12 nucleotidesCSW01_18815 and CSW01_18820 are separated by 99 nucleotides CSW01_18800: CSW01_18800 - hypothetical protein, at 884,645 to 884,854 _18800 CSW01_18805: CSW01_18805 - hypothetical protein, at 885,037 to 885,393 _18805 CSW01_18810: CSW01_18810 - DUF2817 domain-containing protein, at 885,605 to 886,543 _18810 CSW01_18815: CSW01_18815 - AraC family transcriptional regulator, at 886,532 to 887,323 _18815 CSW01_18820: CSW01_18820 - EamA/RhaT family transporter, at 887,423 to 888,322 _18820 Position (kb) 885 886 887Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 884.730 kb on + strand, within CSW01_18800at 884.730 kb on + strand, within CSW01_18800at 884.730 kb on + strand, within CSW01_18800at 884.730 kb on + strand, within CSW01_18800at 884.730 kb on + strand, within CSW01_18800at 884.730 kb on + strand, within CSW01_18800at 884.730 kb on + strand, within CSW01_18800at 884.735 kb on + strand, within CSW01_18800at 884.735 kb on + strand, within CSW01_18800at 884.738 kb on - strand, within CSW01_18800at 884.738 kb on - strand, within CSW01_18800at 884.738 kb on - strand, within CSW01_18800at 884.738 kb on - strand, within CSW01_18800at 884.738 kb on - strand, within CSW01_18800at 884.738 kb on - strand, within CSW01_18800at 884.738 kb on - strand, within CSW01_18800at 884.738 kb on - strand, within CSW01_18800at 884.738 kb on - strand, within CSW01_18800at 884.738 kb on - strand, within CSW01_18800at 884.738 kb on - strand, within CSW01_18800at 884.738 kb on - strand, within CSW01_18800at 884.738 kb on - strand, within CSW01_18800at 884.738 kb on - strand, within CSW01_18800at 884.743 kb on - strand, within CSW01_18800at 884.751 kb on + strand, within CSW01_18800at 884.836 kb on - strandat 884.980 kb on - strandat 884.991 kb on + strandat 884.999 kb on - strandat 884.999 kb on - strandat 884.999 kb on - strandat 884.999 kb on - strandat 884.999 kb on - strandat 884.999 kb on - strandat 884.999 kb on - strandat 885.001 kb on + strandat 885.001 kb on - strandat 885.007 kb on + strandat 885.007 kb on + strandat 885.007 kb on + strandat 885.008 kb on - strandat 885.020 kb on - strandat 885.024 kb on + strandat 885.039 kb on - strandat 885.136 kb on - strand, within CSW01_18805at 885.151 kb on - strand, within CSW01_18805at 885.167 kb on + strand, within CSW01_18805at 885.214 kb on + strand, within CSW01_18805at 885.221 kb on + strand, within CSW01_18805at 885.221 kb on + strand, within CSW01_18805at 885.230 kb on - strand, within CSW01_18805at 885.302 kb on - strand, within CSW01_18805at 885.302 kb on - strand, within CSW01_18805at 885.305 kb on + strand, within CSW01_18805at 885.308 kb on - strand, within CSW01_18805at 885.312 kb on + strand, within CSW01_18805at 885.328 kb on + strand, within CSW01_18805at 885.404 kb on + strandat 885.404 kb on + strandat 885.409 kb on + strandat 885.409 kb on + strandat 885.412 kb on - strandat 885.412 kb on - strandat 885.414 kb on + strandat 885.422 kb on - strandat 885.427 kb on - strandat 885.454 kb on + strandat 885.454 kb on + strandat 885.459 kb on + strandat 885.514 kb on + strandat 885.541 kb on + strandat 885.574 kb on - strandat 885.630 kb on - strandat 885.649 kb on + strandat 885.675 kb on - strandat 885.765 kb on + strand, within CSW01_18810at 885.853 kb on + strand, within CSW01_18810at 885.864 kb on + strand, within CSW01_18810at 885.874 kb on - strand, within CSW01_18810at 885.942 kb on + strand, within CSW01_18810at 886.050 kb on - strand, within CSW01_18810at 886.064 kb on + strand, within CSW01_18810at 886.110 kb on + strand, within CSW01_18810at 886.118 kb on - strand, within CSW01_18810at 886.178 kb on + strand, within CSW01_18810at 886.178 kb on + strand, within CSW01_18810at 886.186 kb on - strand, within CSW01_18810at 886.188 kb on + strand, within CSW01_18810at 886.204 kb on - strand, within CSW01_18810at 886.213 kb on + strand, within CSW01_18810at 886.440 kb on + strand, within CSW01_18810at 886.440 kb on + strand, within CSW01_18810at 886.440 kb on + strand, within CSW01_18810at 886.440 kb on + strand, within CSW01_18810at 886.440 kb on + strand, within CSW01_18810at 886.440 kb on + strand, within CSW01_18810at 886.448 kb on - strand, within CSW01_18810at 886.448 kb on - strand, within CSW01_18810at 886.454 kb on + strandat 886.454 kb on + strandat 886.460 kb on - strandat 886.470 kb on - strandat 886.497 kb on - strandat 886.613 kb on + strand, within CSW01_18815at 886.615 kb on - strand, within CSW01_18815at 886.625 kb on + strand, within CSW01_18815at 886.625 kb on + strand, within CSW01_18815at 886.627 kb on - strand, within CSW01_18815at 886.633 kb on - strand, within CSW01_18815at 886.652 kb on + strand, within CSW01_18815at 886.726 kb on - strand, within CSW01_18815at 886.907 kb on + strand, within CSW01_18815at 886.927 kb on + strand, within CSW01_18815at 886.942 kb on - strand, within CSW01_18815at 886.952 kb on - strand, within CSW01_18815at 886.952 kb on - strand, within CSW01_18815at 887.033 kb on + strand, within CSW01_18815at 887.046 kb on + strand, within CSW01_18815at 887.144 kb on - strand, within CSW01_18815

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_60MIN_ZN4B
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884,730 + CSW01_18800 0.40 +0.0
884,730 + CSW01_18800 0.40 -0.4
884,730 + CSW01_18800 0.40 +0.6
884,730 + CSW01_18800 0.40 -0.4
884,730 + CSW01_18800 0.40 -0.7
884,730 + CSW01_18800 0.40 -0.7
884,730 + CSW01_18800 0.40 +0.9
884,735 + CSW01_18800 0.43 -0.5
884,735 + CSW01_18800 0.43 -0.4
884,738 - CSW01_18800 0.44 -0.2
884,738 - CSW01_18800 0.44 -0.8
884,738 - CSW01_18800 0.44 -0.0
884,738 - CSW01_18800 0.44 -1.2
884,738 - CSW01_18800 0.44 +0.2
884,738 - CSW01_18800 0.44 +0.1
884,738 - CSW01_18800 0.44 +1.2
884,738 - CSW01_18800 0.44 +1.4
884,738 - CSW01_18800 0.44 -3.8
884,738 - CSW01_18800 0.44 +0.6
884,738 - CSW01_18800 0.44 +0.2
884,738 - CSW01_18800 0.44 +0.4
884,738 - CSW01_18800 0.44 +0.1
884,738 - CSW01_18800 0.44 +1.0
884,743 - CSW01_18800 0.47 +0.1
884,751 + CSW01_18800 0.50 -0.2
884,836 - -0.2
884,980 - -3.0
884,991 + +0.1
884,999 - +0.3
884,999 - +0.8
884,999 - +0.4
884,999 - -0.2
884,999 - +0.1
884,999 - +3.1
884,999 - -0.6
885,001 + -0.8
885,001 - -1.0
885,007 + -2.3
885,007 + +0.8
885,007 + +1.4
885,008 - -0.2
885,020 - +0.2
885,024 + +0.4
885,039 - -0.2
885,136 - CSW01_18805 0.28 +0.2
885,151 - CSW01_18805 0.32 +0.8
885,167 + CSW01_18805 0.36 -0.4
885,214 + CSW01_18805 0.50 +0.9
885,221 + CSW01_18805 0.52 -1.5
885,221 + CSW01_18805 0.52 +1.4
885,230 - CSW01_18805 0.54 -0.8
885,302 - CSW01_18805 0.74 -1.5
885,302 - CSW01_18805 0.74 -0.7
885,305 + CSW01_18805 0.75 +0.0
885,308 - CSW01_18805 0.76 -0.4
885,312 + CSW01_18805 0.77 +1.5
885,328 + CSW01_18805 0.82 +0.7
885,404 + +0.5
885,404 + +0.6
885,409 + +0.5
885,409 + +0.4
885,412 - +1.6
885,412 - -0.6
885,414 + +0.3
885,422 - +1.1
885,427 - -0.1
885,454 + +0.0
885,454 + +1.5
885,459 + -3.5
885,514 + -0.2
885,541 + -0.5
885,574 - +0.3
885,630 - -0.4
885,649 + +2.3
885,675 - -0.2
885,765 + CSW01_18810 0.17 -0.3
885,853 + CSW01_18810 0.26 -1.1
885,864 + CSW01_18810 0.28 +0.8
885,874 - CSW01_18810 0.29 +1.3
885,942 + CSW01_18810 0.36 -0.9
886,050 - CSW01_18810 0.47 +0.7
886,064 + CSW01_18810 0.49 -0.1
886,110 + CSW01_18810 0.54 -0.7
886,118 - CSW01_18810 0.55 -0.6
886,178 + CSW01_18810 0.61 +0.5
886,178 + CSW01_18810 0.61 +1.6
886,186 - CSW01_18810 0.62 -0.1
886,188 + CSW01_18810 0.62 +0.0
886,204 - CSW01_18810 0.64 +1.3
886,213 + CSW01_18810 0.65 +1.8
886,440 + CSW01_18810 0.89 +0.3
886,440 + CSW01_18810 0.89 +0.1
886,440 + CSW01_18810 0.89 -0.2
886,440 + CSW01_18810 0.89 +0.5
886,440 + CSW01_18810 0.89 +1.2
886,440 + CSW01_18810 0.89 -0.5
886,448 - CSW01_18810 0.90 -0.5
886,448 - CSW01_18810 0.90 +1.6
886,454 + +2.3
886,454 + -0.4
886,460 - -0.3
886,470 - +0.9
886,497 - +0.4
886,613 + CSW01_18815 0.10 -1.7
886,615 - CSW01_18815 0.10 +0.3
886,625 + CSW01_18815 0.12 -1.2
886,625 + CSW01_18815 0.12 +0.5
886,627 - CSW01_18815 0.12 -0.6
886,633 - CSW01_18815 0.13 -0.6
886,652 + CSW01_18815 0.15 +0.3
886,726 - CSW01_18815 0.24 +0.3
886,907 + CSW01_18815 0.47 -3.0
886,927 + CSW01_18815 0.50 +0.1
886,942 - CSW01_18815 0.52 +0.3
886,952 - CSW01_18815 0.53 +1.4
886,952 - CSW01_18815 0.53 +0.6
887,033 + CSW01_18815 0.63 -0.5
887,046 + CSW01_18815 0.65 +0.5
887,144 - CSW01_18815 0.77 -0.5

Or see this region's nucleotide sequence