Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18545

Experiment: LB_Anaerobic_60MIN_ZN4B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18540 and CSW01_18545 are separated by 12 nucleotidesCSW01_18545 and CSW01_18550 are separated by 50 nucleotides CSW01_18540: CSW01_18540 - hypothetical protein, at 831,683 to 832,747 _18540 CSW01_18545: CSW01_18545 - non-hemolytic enterotoxin lytic component L1, at 832,760 to 833,869 _18545 CSW01_18550: CSW01_18550 - non-hemolytic enterotoxin lytic component L1, at 833,920 to 834,981 _18550 Position (kb) 832 833 834Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 831.841 kb on + strand, within CSW01_18540at 831.842 kb on - strand, within CSW01_18540at 831.864 kb on + strand, within CSW01_18540at 831.872 kb on - strand, within CSW01_18540at 831.940 kb on - strand, within CSW01_18540at 831.977 kb on - strand, within CSW01_18540at 831.984 kb on - strand, within CSW01_18540at 832.107 kb on + strand, within CSW01_18540at 832.151 kb on + strand, within CSW01_18540at 832.159 kb on - strand, within CSW01_18540at 832.177 kb on - strand, within CSW01_18540at 832.318 kb on - strand, within CSW01_18540at 832.333 kb on + strand, within CSW01_18540at 832.333 kb on + strand, within CSW01_18540at 832.341 kb on - strand, within CSW01_18540at 832.359 kb on + strand, within CSW01_18540at 832.418 kb on + strand, within CSW01_18540at 832.555 kb on - strand, within CSW01_18540at 832.557 kb on + strand, within CSW01_18540at 832.578 kb on - strand, within CSW01_18540at 832.578 kb on - strand, within CSW01_18540at 832.578 kb on - strand, within CSW01_18540at 832.590 kb on + strand, within CSW01_18540at 832.590 kb on + strand, within CSW01_18540at 832.590 kb on + strand, within CSW01_18540at 832.598 kb on - strand, within CSW01_18540at 832.598 kb on - strand, within CSW01_18540at 832.598 kb on - strand, within CSW01_18540at 832.598 kb on - strand, within CSW01_18540at 832.680 kb on - strandat 832.685 kb on + strandat 832.723 kb on + strandat 832.723 kb on + strandat 832.731 kb on - strandat 832.731 kb on - strandat 832.742 kb on + strandat 832.750 kb on - strandat 832.778 kb on + strandat 832.788 kb on - strandat 832.833 kb on + strandat 832.838 kb on + strandat 832.846 kb on - strandat 832.846 kb on - strandat 832.851 kb on - strandat 832.980 kb on + strand, within CSW01_18545at 833.110 kb on + strand, within CSW01_18545at 833.110 kb on + strand, within CSW01_18545at 833.118 kb on - strand, within CSW01_18545at 833.118 kb on - strand, within CSW01_18545at 833.169 kb on + strand, within CSW01_18545at 833.207 kb on + strand, within CSW01_18545at 833.207 kb on + strand, within CSW01_18545at 833.333 kb on + strand, within CSW01_18545at 833.421 kb on + strand, within CSW01_18545at 833.429 kb on + strand, within CSW01_18545at 833.521 kb on + strand, within CSW01_18545at 833.577 kb on + strand, within CSW01_18545at 833.579 kb on + strand, within CSW01_18545at 833.599 kb on + strand, within CSW01_18545at 833.669 kb on + strand, within CSW01_18545at 833.669 kb on + strand, within CSW01_18545at 833.669 kb on + strand, within CSW01_18545at 833.704 kb on + strand, within CSW01_18545at 833.712 kb on - strand, within CSW01_18545at 833.728 kb on + strand, within CSW01_18545at 833.730 kb on + strand, within CSW01_18545at 833.847 kb on - strandat 833.862 kb on - strandat 833.864 kb on + strandat 833.872 kb on - strandat 833.872 kb on - strandat 833.903 kb on - strandat 833.983 kb on - strandat 834.010 kb on + strandat 834.043 kb on - strand, within CSW01_18550at 834.048 kb on - strand, within CSW01_18550at 834.050 kb on - strand, within CSW01_18550at 834.050 kb on - strand, within CSW01_18550at 834.104 kb on - strand, within CSW01_18550at 834.201 kb on + strand, within CSW01_18550at 834.209 kb on - strand, within CSW01_18550at 834.237 kb on + strand, within CSW01_18550at 834.238 kb on + strand, within CSW01_18550at 834.254 kb on - strand, within CSW01_18550at 834.306 kb on + strand, within CSW01_18550at 834.360 kb on - strand, within CSW01_18550at 834.374 kb on + strand, within CSW01_18550at 834.456 kb on + strand, within CSW01_18550at 834.556 kb on - strand, within CSW01_18550at 834.589 kb on - strand, within CSW01_18550at 834.601 kb on - strand, within CSW01_18550at 834.726 kb on + strand, within CSW01_18550at 834.784 kb on + strand, within CSW01_18550at 834.862 kb on - strand, within CSW01_18550

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_60MIN_ZN4B
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831,841 + CSW01_18540 0.15 -0.1
831,842 - CSW01_18540 0.15 -0.9
831,864 + CSW01_18540 0.17 +0.6
831,872 - CSW01_18540 0.18 +0.9
831,940 - CSW01_18540 0.24 +0.1
831,977 - CSW01_18540 0.28 -0.1
831,984 - CSW01_18540 0.28 +0.7
832,107 + CSW01_18540 0.40 +0.2
832,151 + CSW01_18540 0.44 +0.3
832,159 - CSW01_18540 0.45 +0.6
832,177 - CSW01_18540 0.46 +0.2
832,318 - CSW01_18540 0.60 +1.0
832,333 + CSW01_18540 0.61 -0.7
832,333 + CSW01_18540 0.61 +0.3
832,341 - CSW01_18540 0.62 +1.2
832,359 + CSW01_18540 0.63 +0.1
832,418 + CSW01_18540 0.69 +0.6
832,555 - CSW01_18540 0.82 +0.3
832,557 + CSW01_18540 0.82 +2.3
832,578 - CSW01_18540 0.84 -0.0
832,578 - CSW01_18540 0.84 -0.7
832,578 - CSW01_18540 0.84 -3.3
832,590 + CSW01_18540 0.85 -0.7
832,590 + CSW01_18540 0.85 +0.3
832,590 + CSW01_18540 0.85 +1.0
832,598 - CSW01_18540 0.86 +0.2
832,598 - CSW01_18540 0.86 +0.9
832,598 - CSW01_18540 0.86 -0.7
832,598 - CSW01_18540 0.86 -2.2
832,680 - +2.2
832,685 + -0.0
832,723 + -0.1
832,723 + +1.4
832,731 - -0.1
832,731 - +0.5
832,742 + -0.3
832,750 - +0.2
832,778 + +1.0
832,788 - +0.5
832,833 + +0.2
832,838 + +0.1
832,846 - -0.1
832,846 - +1.0
832,851 - +2.9
832,980 + CSW01_18545 0.20 +0.1
833,110 + CSW01_18545 0.32 -0.5
833,110 + CSW01_18545 0.32 -1.7
833,118 - CSW01_18545 0.32 -0.4
833,118 - CSW01_18545 0.32 -0.2
833,169 + CSW01_18545 0.37 -0.8
833,207 + CSW01_18545 0.40 -1.9
833,207 + CSW01_18545 0.40 -0.1
833,333 + CSW01_18545 0.52 -2.6
833,421 + CSW01_18545 0.60 +0.9
833,429 + CSW01_18545 0.60 +0.3
833,521 + CSW01_18545 0.69 +0.7
833,577 + CSW01_18545 0.74 +0.6
833,579 + CSW01_18545 0.74 +0.1
833,599 + CSW01_18545 0.76 -0.3
833,669 + CSW01_18545 0.82 -2.0
833,669 + CSW01_18545 0.82 -0.7
833,669 + CSW01_18545 0.82 -2.7
833,704 + CSW01_18545 0.85 -1.2
833,712 - CSW01_18545 0.86 -1.2
833,728 + CSW01_18545 0.87 -0.9
833,730 + CSW01_18545 0.87 -0.1
833,847 - -0.6
833,862 - +0.1
833,864 + -0.3
833,872 - +0.8
833,872 - +0.0
833,903 - +0.7
833,983 - +0.2
834,010 + -0.4
834,043 - CSW01_18550 0.12 -0.9
834,048 - CSW01_18550 0.12 -0.3
834,050 - CSW01_18550 0.12 -0.7
834,050 - CSW01_18550 0.12 +0.9
834,104 - CSW01_18550 0.17 +0.5
834,201 + CSW01_18550 0.26 +0.2
834,209 - CSW01_18550 0.27 +0.2
834,237 + CSW01_18550 0.30 -0.9
834,238 + CSW01_18550 0.30 +0.8
834,254 - CSW01_18550 0.31 +0.5
834,306 + CSW01_18550 0.36 +1.2
834,360 - CSW01_18550 0.41 -1.4
834,374 + CSW01_18550 0.43 -1.7
834,456 + CSW01_18550 0.50 +0.4
834,556 - CSW01_18550 0.60 -3.3
834,589 - CSW01_18550 0.63 -0.6
834,601 - CSW01_18550 0.64 +0.0
834,726 + CSW01_18550 0.76 +0.3
834,784 + CSW01_18550 0.81 -0.8
834,862 - CSW01_18550 0.89 -0.1

Or see this region's nucleotide sequence