Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18140

Experiment: LB_Anaerobic_60MIN_ZN4B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18130 and CSW01_18135 are separated by 112 nucleotidesCSW01_18135 and CSW01_18140 are separated by 0 nucleotidesCSW01_18140 and CSW01_18145 are separated by 214 nucleotides CSW01_18130: CSW01_18130 - IS3 family transposase, at 733,954 to 735,131 _18130 CSW01_18135: CSW01_18135 - Rha family transcriptional regulator, at 735,244 to 735,726 _18135 CSW01_18140: CSW01_18140 - hypothetical protein, at 735,727 to 736,020 _18140 CSW01_18145: CSW01_18145 - resolvase, at 736,235 to 737,191 _18145 Position (kb) 735 736 737Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 735.212 kb on - strandat 735.219 kb on + strandat 735.219 kb on + strandat 735.219 kb on + strandat 735.219 kb on + strandat 735.219 kb on + strandat 735.219 kb on + strandat 735.227 kb on - strandat 735.227 kb on - strandat 735.227 kb on - strandat 735.227 kb on - strandat 735.288 kb on + strandat 735.295 kb on - strand, within CSW01_18135at 735.295 kb on - strand, within CSW01_18135at 735.297 kb on + strand, within CSW01_18135at 735.297 kb on + strand, within CSW01_18135at 735.300 kb on + strand, within CSW01_18135at 735.312 kb on - strand, within CSW01_18135at 735.435 kb on + strand, within CSW01_18135at 735.435 kb on + strand, within CSW01_18135at 735.443 kb on - strand, within CSW01_18135at 735.459 kb on + strand, within CSW01_18135at 735.467 kb on - strand, within CSW01_18135at 735.488 kb on - strand, within CSW01_18135at 735.495 kb on + strand, within CSW01_18135at 735.577 kb on - strand, within CSW01_18135at 735.579 kb on - strand, within CSW01_18135at 735.634 kb on - strand, within CSW01_18135at 735.672 kb on + strand, within CSW01_18135at 735.703 kb on - strandat 735.863 kb on + strand, within CSW01_18140at 735.871 kb on - strand, within CSW01_18140at 735.871 kb on - strand, within CSW01_18140at 735.908 kb on + strand, within CSW01_18140at 735.916 kb on - strand, within CSW01_18140at 735.916 kb on - strand, within CSW01_18140at 735.935 kb on - strand, within CSW01_18140at 735.945 kb on + strand, within CSW01_18140at 735.953 kb on - strand, within CSW01_18140at 736.012 kb on - strandat 736.119 kb on - strandat 736.294 kb on + strandat 736.370 kb on + strand, within CSW01_18145at 736.378 kb on + strand, within CSW01_18145at 736.386 kb on - strand, within CSW01_18145at 736.409 kb on - strand, within CSW01_18145at 736.411 kb on + strand, within CSW01_18145at 736.419 kb on - strand, within CSW01_18145at 736.419 kb on - strand, within CSW01_18145at 736.429 kb on + strand, within CSW01_18145at 736.439 kb on + strand, within CSW01_18145at 736.444 kb on + strand, within CSW01_18145at 736.482 kb on - strand, within CSW01_18145at 736.491 kb on - strand, within CSW01_18145at 736.491 kb on - strand, within CSW01_18145at 736.491 kb on - strand, within CSW01_18145at 736.533 kb on + strand, within CSW01_18145at 736.541 kb on - strand, within CSW01_18145at 736.542 kb on + strand, within CSW01_18145at 736.581 kb on + strand, within CSW01_18145at 736.598 kb on + strand, within CSW01_18145at 736.606 kb on - strand, within CSW01_18145at 736.627 kb on - strand, within CSW01_18145at 736.650 kb on - strand, within CSW01_18145at 736.650 kb on - strand, within CSW01_18145at 736.704 kb on + strand, within CSW01_18145at 736.730 kb on - strand, within CSW01_18145at 736.730 kb on - strand, within CSW01_18145at 736.739 kb on + strand, within CSW01_18145at 736.742 kb on - strand, within CSW01_18145at 736.841 kb on + strand, within CSW01_18145at 736.849 kb on - strand, within CSW01_18145at 736.849 kb on - strand, within CSW01_18145at 736.873 kb on + strand, within CSW01_18145at 736.873 kb on + strand, within CSW01_18145at 736.898 kb on + strand, within CSW01_18145at 736.898 kb on + strand, within CSW01_18145at 736.906 kb on - strand, within CSW01_18145at 736.928 kb on + strand, within CSW01_18145at 736.979 kb on - strand, within CSW01_18145

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_60MIN_ZN4B
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735,212 - -2.3
735,219 + -2.1
735,219 + -2.3
735,219 + -1.3
735,219 + +1.0
735,219 + +0.2
735,219 + -0.6
735,227 - +0.8
735,227 - -0.7
735,227 - -0.1
735,227 - +0.7
735,288 + -1.4
735,295 - CSW01_18135 0.11 -0.4
735,295 - CSW01_18135 0.11 -2.3
735,297 + CSW01_18135 0.11 +0.3
735,297 + CSW01_18135 0.11 +0.5
735,300 + CSW01_18135 0.12 +0.2
735,312 - CSW01_18135 0.14 -1.7
735,435 + CSW01_18135 0.40 +0.4
735,435 + CSW01_18135 0.40 +0.2
735,443 - CSW01_18135 0.41 +2.9
735,459 + CSW01_18135 0.45 -1.7
735,467 - CSW01_18135 0.46 -1.7
735,488 - CSW01_18135 0.51 +0.2
735,495 + CSW01_18135 0.52 +2.4
735,577 - CSW01_18135 0.69 -0.6
735,579 - CSW01_18135 0.69 +1.0
735,634 - CSW01_18135 0.81 -1.7
735,672 + CSW01_18135 0.89 -0.1
735,703 - -0.1
735,863 + CSW01_18140 0.46 -1.5
735,871 - CSW01_18140 0.49 -3.2
735,871 - CSW01_18140 0.49 -3.9
735,908 + CSW01_18140 0.62 -0.8
735,916 - CSW01_18140 0.64 -0.0
735,916 - CSW01_18140 0.64 -0.1
735,935 - CSW01_18140 0.71 +0.0
735,945 + CSW01_18140 0.74 -1.7
735,953 - CSW01_18140 0.77 +2.4
736,012 - +0.1
736,119 - +1.1
736,294 + -0.3
736,370 + CSW01_18145 0.14 -0.2
736,378 + CSW01_18145 0.15 +0.7
736,386 - CSW01_18145 0.16 -3.0
736,409 - CSW01_18145 0.18 -1.3
736,411 + CSW01_18145 0.18 -0.2
736,419 - CSW01_18145 0.19 -1.7
736,419 - CSW01_18145 0.19 -2.4
736,429 + CSW01_18145 0.20 -2.9
736,439 + CSW01_18145 0.21 -2.0
736,444 + CSW01_18145 0.22 +1.0
736,482 - CSW01_18145 0.26 -0.9
736,491 - CSW01_18145 0.27 +0.2
736,491 - CSW01_18145 0.27 -0.1
736,491 - CSW01_18145 0.27 -0.1
736,533 + CSW01_18145 0.31 +1.5
736,541 - CSW01_18145 0.32 +0.1
736,542 + CSW01_18145 0.32 -0.3
736,581 + CSW01_18145 0.36 +1.3
736,598 + CSW01_18145 0.38 -0.7
736,606 - CSW01_18145 0.39 -3.2
736,627 - CSW01_18145 0.41 +0.0
736,650 - CSW01_18145 0.43 +0.2
736,650 - CSW01_18145 0.43 +0.1
736,704 + CSW01_18145 0.49 -0.5
736,730 - CSW01_18145 0.52 -0.1
736,730 - CSW01_18145 0.52 -0.2
736,739 + CSW01_18145 0.53 +0.9
736,742 - CSW01_18145 0.53 -0.0
736,841 + CSW01_18145 0.63 +0.3
736,849 - CSW01_18145 0.64 -0.5
736,849 - CSW01_18145 0.64 +0.1
736,873 + CSW01_18145 0.67 -0.1
736,873 + CSW01_18145 0.67 -1.8
736,898 + CSW01_18145 0.69 +1.7
736,898 + CSW01_18145 0.69 -0.1
736,906 - CSW01_18145 0.70 +0.8
736,928 + CSW01_18145 0.72 -2.0
736,979 - CSW01_18145 0.78 +0.0

Or see this region's nucleotide sequence