Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18080

Experiment: LB_Anaerobic_60MIN_ZN4B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18075 and CSW01_18080 are separated by 388 nucleotidesCSW01_18080 and CSW01_18085 overlap by 4 nucleotidesCSW01_18085 and CSW01_18090 overlap by 50 nucleotides CSW01_18075: CSW01_18075 - nucleotide sugar dehydrogenase, at 720,399 to 721,565 _18075 CSW01_18080: CSW01_18080 - ABC transporter permease, at 721,954 to 724,401 _18080 CSW01_18085: CSW01_18085 - ABC transporter, at 724,398 to 725,075 _18085 CSW01_18090: CSW01_18090 - multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1, at 725,026 to 725,673 _18090 Position (kb) 721 722 723 724 725Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 721.110 kb on - strand, within CSW01_18075at 721.121 kb on + strand, within CSW01_18075at 721.195 kb on + strand, within CSW01_18075at 721.226 kb on + strand, within CSW01_18075at 721.234 kb on - strand, within CSW01_18075at 721.392 kb on + strand, within CSW01_18075at 721.401 kb on - strand, within CSW01_18075at 721.462 kb on + strandat 721.465 kb on - strandat 721.468 kb on - strandat 721.468 kb on - strandat 721.574 kb on + strandat 721.864 kb on - strandat 721.864 kb on - strandat 721.870 kb on + strandat 721.870 kb on + strandat 721.891 kb on + strandat 721.909 kb on - strandat 722.046 kb on + strandat 722.046 kb on + strandat 722.054 kb on - strandat 722.060 kb on + strandat 722.060 kb on + strandat 722.068 kb on - strandat 722.118 kb on + strandat 722.143 kb on + strandat 722.152 kb on - strandat 722.172 kb on - strandat 722.195 kb on - strandat 722.216 kb on - strand, within CSW01_18080at 722.253 kb on + strand, within CSW01_18080at 722.255 kb on - strand, within CSW01_18080at 722.255 kb on - strand, within CSW01_18080at 722.261 kb on - strand, within CSW01_18080at 722.261 kb on - strand, within CSW01_18080at 722.261 kb on - strand, within CSW01_18080at 722.261 kb on - strand, within CSW01_18080at 722.322 kb on - strand, within CSW01_18080at 722.433 kb on - strand, within CSW01_18080at 722.495 kb on - strand, within CSW01_18080at 722.568 kb on + strand, within CSW01_18080at 722.615 kb on - strand, within CSW01_18080at 722.703 kb on + strand, within CSW01_18080at 722.703 kb on + strand, within CSW01_18080at 722.709 kb on - strand, within CSW01_18080at 722.739 kb on - strand, within CSW01_18080at 722.741 kb on + strand, within CSW01_18080at 722.749 kb on + strand, within CSW01_18080at 722.749 kb on + strand, within CSW01_18080at 722.796 kb on - strand, within CSW01_18080at 722.804 kb on - strand, within CSW01_18080at 722.831 kb on - strand, within CSW01_18080at 722.836 kb on - strand, within CSW01_18080at 722.843 kb on - strand, within CSW01_18080at 722.851 kb on + strand, within CSW01_18080at 722.859 kb on - strand, within CSW01_18080at 722.859 kb on - strand, within CSW01_18080at 722.896 kb on - strand, within CSW01_18080at 722.966 kb on + strand, within CSW01_18080at 722.969 kb on - strand, within CSW01_18080at 722.969 kb on - strand, within CSW01_18080at 723.105 kb on + strand, within CSW01_18080at 723.105 kb on + strand, within CSW01_18080at 723.110 kb on + strand, within CSW01_18080at 723.110 kb on + strand, within CSW01_18080at 723.110 kb on + strand, within CSW01_18080at 723.113 kb on - strand, within CSW01_18080at 723.113 kb on - strand, within CSW01_18080at 723.149 kb on - strand, within CSW01_18080at 723.149 kb on - strand, within CSW01_18080at 723.149 kb on - strand, within CSW01_18080at 723.169 kb on - strand, within CSW01_18080at 723.262 kb on - strand, within CSW01_18080at 723.270 kb on - strand, within CSW01_18080at 723.289 kb on + strand, within CSW01_18080at 723.356 kb on - strand, within CSW01_18080at 723.356 kb on - strand, within CSW01_18080at 723.356 kb on - strand, within CSW01_18080at 723.446 kb on + strand, within CSW01_18080at 723.451 kb on + strand, within CSW01_18080at 723.451 kb on + strand, within CSW01_18080at 723.459 kb on - strand, within CSW01_18080at 723.505 kb on - strand, within CSW01_18080at 723.549 kb on - strand, within CSW01_18080at 723.583 kb on + strand, within CSW01_18080at 723.584 kb on - strand, within CSW01_18080at 723.588 kb on + strand, within CSW01_18080at 723.588 kb on + strand, within CSW01_18080at 723.588 kb on + strand, within CSW01_18080at 723.588 kb on + strand, within CSW01_18080at 723.588 kb on + strand, within CSW01_18080at 723.588 kb on + strand, within CSW01_18080at 723.588 kb on + strand, within CSW01_18080at 723.588 kb on + strand, within CSW01_18080at 723.588 kb on + strand, within CSW01_18080at 723.588 kb on + strand, within CSW01_18080at 723.588 kb on + strand, within CSW01_18080at 723.588 kb on + strand, within CSW01_18080at 723.588 kb on + strand, within CSW01_18080at 723.588 kb on + strand, within CSW01_18080at 723.588 kb on + strand, within CSW01_18080at 723.591 kb on - strand, within CSW01_18080at 723.596 kb on - strand, within CSW01_18080at 723.596 kb on - strand, within CSW01_18080at 723.596 kb on - strand, within CSW01_18080at 723.596 kb on - strand, within CSW01_18080at 723.596 kb on - strand, within CSW01_18080at 723.596 kb on - strand, within CSW01_18080at 723.596 kb on - strand, within CSW01_18080at 723.596 kb on - strand, within CSW01_18080at 723.596 kb on - strand, within CSW01_18080at 723.596 kb on - strand, within CSW01_18080at 723.596 kb on - strand, within CSW01_18080at 723.596 kb on - strand, within CSW01_18080at 723.596 kb on - strand, within CSW01_18080at 723.596 kb on - strand, within CSW01_18080at 723.623 kb on + strand, within CSW01_18080at 723.635 kb on + strand, within CSW01_18080at 723.640 kb on + strand, within CSW01_18080at 723.640 kb on + strand, within CSW01_18080at 723.650 kb on - strand, within CSW01_18080at 723.661 kb on + strand, within CSW01_18080at 723.674 kb on - strand, within CSW01_18080at 723.719 kb on - strand, within CSW01_18080at 723.719 kb on - strand, within CSW01_18080at 723.751 kb on + strand, within CSW01_18080at 723.751 kb on + strand, within CSW01_18080at 723.759 kb on - strand, within CSW01_18080at 723.819 kb on + strand, within CSW01_18080at 723.869 kb on - strand, within CSW01_18080at 723.873 kb on + strand, within CSW01_18080at 723.873 kb on + strand, within CSW01_18080at 723.873 kb on + strand, within CSW01_18080at 723.891 kb on + strand, within CSW01_18080at 723.891 kb on - strand, within CSW01_18080at 723.899 kb on - strand, within CSW01_18080at 724.002 kb on - strand, within CSW01_18080at 724.068 kb on - strand, within CSW01_18080at 724.113 kb on - strand, within CSW01_18080at 724.171 kb on - strandat 724.221 kb on + strandat 724.229 kb on - strandat 724.251 kb on - strandat 724.300 kb on + strandat 724.305 kb on + strandat 724.305 kb on + strandat 724.305 kb on + strandat 724.308 kb on - strandat 724.409 kb on + strandat 724.467 kb on - strand, within CSW01_18085at 724.487 kb on + strand, within CSW01_18085at 724.487 kb on + strand, within CSW01_18085at 724.487 kb on + strand, within CSW01_18085at 724.662 kb on - strand, within CSW01_18085at 724.666 kb on + strand, within CSW01_18085at 724.687 kb on + strand, within CSW01_18085at 724.695 kb on - strand, within CSW01_18085at 724.695 kb on - strand, within CSW01_18085at 724.705 kb on - strand, within CSW01_18085at 724.829 kb on - strand, within CSW01_18085at 724.836 kb on + strand, within CSW01_18085at 724.880 kb on - strand, within CSW01_18085at 724.907 kb on - strand, within CSW01_18085at 724.915 kb on + strand, within CSW01_18085at 724.923 kb on - strand, within CSW01_18085at 724.948 kb on - strand, within CSW01_18085at 725.005 kb on - strand, within CSW01_18085at 725.016 kb on + strandat 725.029 kb on - strandat 725.043 kb on - strandat 725.109 kb on + strand, within CSW01_18090at 725.156 kb on + strand, within CSW01_18090at 725.167 kb on + strand, within CSW01_18090at 725.175 kb on - strand, within CSW01_18090at 725.238 kb on - strand, within CSW01_18090at 725.320 kb on - strand, within CSW01_18090at 725.322 kb on + strand, within CSW01_18090at 725.330 kb on - strand, within CSW01_18090at 725.390 kb on + strand, within CSW01_18090at 725.390 kb on + strand, within CSW01_18090at 725.390 kb on + strand, within CSW01_18090at 725.390 kb on + strand, within CSW01_18090at 725.390 kb on + strand, within CSW01_18090at 725.398 kb on - strand, within CSW01_18090at 725.398 kb on - strand, within CSW01_18090

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_60MIN_ZN4B
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721,110 - CSW01_18075 0.61 +0.5
721,121 + CSW01_18075 0.62 -0.3
721,195 + CSW01_18075 0.68 -1.6
721,226 + CSW01_18075 0.71 -0.8
721,234 - CSW01_18075 0.72 -1.2
721,392 + CSW01_18075 0.85 -1.5
721,401 - CSW01_18075 0.86 +0.2
721,462 + -0.0
721,465 - +0.3
721,468 - +0.4
721,468 - +3.3
721,574 + +0.1
721,864 - +0.4
721,864 - +0.3
721,870 + -0.7
721,870 + -0.7
721,891 + -0.2
721,909 - +1.0
722,046 + +0.8
722,046 + -0.2
722,054 - +2.5
722,060 + +1.5
722,060 + -0.1
722,068 - -1.2
722,118 + -0.8
722,143 + +0.5
722,152 - -0.7
722,172 - -1.9
722,195 - +0.4
722,216 - CSW01_18080 0.11 +0.7
722,253 + CSW01_18080 0.12 -0.8
722,255 - CSW01_18080 0.12 -0.4
722,255 - CSW01_18080 0.12 -0.2
722,261 - CSW01_18080 0.13 +0.3
722,261 - CSW01_18080 0.13 +1.0
722,261 - CSW01_18080 0.13 -1.0
722,261 - CSW01_18080 0.13 -0.5
722,322 - CSW01_18080 0.15 +0.5
722,433 - CSW01_18080 0.20 -0.7
722,495 - CSW01_18080 0.22 -0.6
722,568 + CSW01_18080 0.25 -0.8
722,615 - CSW01_18080 0.27 +0.6
722,703 + CSW01_18080 0.31 +0.7
722,703 + CSW01_18080 0.31 -0.6
722,709 - CSW01_18080 0.31 +0.4
722,739 - CSW01_18080 0.32 +1.4
722,741 + CSW01_18080 0.32 -0.7
722,749 + CSW01_18080 0.32 -1.3
722,749 + CSW01_18080 0.32 +0.3
722,796 - CSW01_18080 0.34 -0.1
722,804 - CSW01_18080 0.35 +0.2
722,831 - CSW01_18080 0.36 +0.2
722,836 - CSW01_18080 0.36 +1.3
722,843 - CSW01_18080 0.36 +0.8
722,851 + CSW01_18080 0.37 +0.7
722,859 - CSW01_18080 0.37 -0.1
722,859 - CSW01_18080 0.37 +0.3
722,896 - CSW01_18080 0.38 -2.7
722,966 + CSW01_18080 0.41 -0.3
722,969 - CSW01_18080 0.41 -0.3
722,969 - CSW01_18080 0.41 -0.5
723,105 + CSW01_18080 0.47 +1.0
723,105 + CSW01_18080 0.47 -0.6
723,110 + CSW01_18080 0.47 -1.2
723,110 + CSW01_18080 0.47 -0.4
723,110 + CSW01_18080 0.47 +0.5
723,113 - CSW01_18080 0.47 -0.6
723,113 - CSW01_18080 0.47 -1.0
723,149 - CSW01_18080 0.49 +0.5
723,149 - CSW01_18080 0.49 -0.5
723,149 - CSW01_18080 0.49 -1.0
723,169 - CSW01_18080 0.50 -2.0
723,262 - CSW01_18080 0.53 -0.7
723,270 - CSW01_18080 0.54 -0.6
723,289 + CSW01_18080 0.55 +0.7
723,356 - CSW01_18080 0.57 +0.1
723,356 - CSW01_18080 0.57 +0.6
723,356 - CSW01_18080 0.57 -0.7
723,446 + CSW01_18080 0.61 -1.3
723,451 + CSW01_18080 0.61 -1.1
723,451 + CSW01_18080 0.61 +0.6
723,459 - CSW01_18080 0.61 -1.9
723,505 - CSW01_18080 0.63 +2.0
723,549 - CSW01_18080 0.65 -0.5
723,583 + CSW01_18080 0.67 +0.5
723,584 - CSW01_18080 0.67 -0.5
723,588 + CSW01_18080 0.67 +0.0
723,588 + CSW01_18080 0.67 +0.8
723,588 + CSW01_18080 0.67 +0.3
723,588 + CSW01_18080 0.67 +2.3
723,588 + CSW01_18080 0.67 -1.2
723,588 + CSW01_18080 0.67 -0.0
723,588 + CSW01_18080 0.67 +0.0
723,588 + CSW01_18080 0.67 -1.3
723,588 + CSW01_18080 0.67 +0.6
723,588 + CSW01_18080 0.67 -0.7
723,588 + CSW01_18080 0.67 -2.5
723,588 + CSW01_18080 0.67 +1.0
723,588 + CSW01_18080 0.67 +0.8
723,588 + CSW01_18080 0.67 +0.8
723,588 + CSW01_18080 0.67 -0.6
723,591 - CSW01_18080 0.67 -0.7
723,596 - CSW01_18080 0.67 -0.6
723,596 - CSW01_18080 0.67 +0.7
723,596 - CSW01_18080 0.67 -0.7
723,596 - CSW01_18080 0.67 -0.6
723,596 - CSW01_18080 0.67 -2.9
723,596 - CSW01_18080 0.67 +2.1
723,596 - CSW01_18080 0.67 +0.3
723,596 - CSW01_18080 0.67 -2.1
723,596 - CSW01_18080 0.67 -0.3
723,596 - CSW01_18080 0.67 +1.1
723,596 - CSW01_18080 0.67 -0.7
723,596 - CSW01_18080 0.67 +1.3
723,596 - CSW01_18080 0.67 -0.1
723,596 - CSW01_18080 0.67 +0.0
723,623 + CSW01_18080 0.68 +1.0
723,635 + CSW01_18080 0.69 -0.1
723,640 + CSW01_18080 0.69 -0.5
723,640 + CSW01_18080 0.69 +0.8
723,650 - CSW01_18080 0.69 +0.8
723,661 + CSW01_18080 0.70 +0.8
723,674 - CSW01_18080 0.70 -0.7
723,719 - CSW01_18080 0.72 -0.9
723,719 - CSW01_18080 0.72 -0.8
723,751 + CSW01_18080 0.73 +0.9
723,751 + CSW01_18080 0.73 +1.3
723,759 - CSW01_18080 0.74 -0.7
723,819 + CSW01_18080 0.76 -0.6
723,869 - CSW01_18080 0.78 +0.5
723,873 + CSW01_18080 0.78 -0.6
723,873 + CSW01_18080 0.78 +0.4
723,873 + CSW01_18080 0.78 -0.3
723,891 + CSW01_18080 0.79 +0.6
723,891 - CSW01_18080 0.79 +0.9
723,899 - CSW01_18080 0.79 -0.9
724,002 - CSW01_18080 0.84 -0.9
724,068 - CSW01_18080 0.86 -1.0
724,113 - CSW01_18080 0.88 -0.3
724,171 - +1.2
724,221 + +0.7
724,229 - +0.9
724,251 - -2.9
724,300 + -0.4
724,305 + -1.0
724,305 + +0.2
724,305 + +0.7
724,308 - -0.8
724,409 + +0.0
724,467 - CSW01_18085 0.10 +1.2
724,487 + CSW01_18085 0.13 -1.4
724,487 + CSW01_18085 0.13 -1.7
724,487 + CSW01_18085 0.13 +1.2
724,662 - CSW01_18085 0.39 +0.3
724,666 + CSW01_18085 0.40 +0.0
724,687 + CSW01_18085 0.43 -0.0
724,695 - CSW01_18085 0.44 -1.4
724,695 - CSW01_18085 0.44 -0.0
724,705 - CSW01_18085 0.45 +3.0
724,829 - CSW01_18085 0.64 -2.9
724,836 + CSW01_18085 0.65 +0.4
724,880 - CSW01_18085 0.71 -0.5
724,907 - CSW01_18085 0.75 +0.5
724,915 + CSW01_18085 0.76 +0.9
724,923 - CSW01_18085 0.77 -2.0
724,948 - CSW01_18085 0.81 -0.7
725,005 - CSW01_18085 0.90 +0.6
725,016 + -0.5
725,029 - +0.2
725,043 - -0.5
725,109 + CSW01_18090 0.13 +3.0
725,156 + CSW01_18090 0.20 +1.6
725,167 + CSW01_18090 0.22 +0.0
725,175 - CSW01_18090 0.23 -2.0
725,238 - CSW01_18090 0.33 -0.1
725,320 - CSW01_18090 0.45 +1.4
725,322 + CSW01_18090 0.46 +0.3
725,330 - CSW01_18090 0.47 -0.8
725,390 + CSW01_18090 0.56 +0.7
725,390 + CSW01_18090 0.56 +1.7
725,390 + CSW01_18090 0.56 -0.3
725,390 + CSW01_18090 0.56 +0.1
725,390 + CSW01_18090 0.56 +1.0
725,398 - CSW01_18090 0.57 -0.8
725,398 - CSW01_18090 0.57 -0.4

Or see this region's nucleotide sequence