Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17725

Experiment: LB_Anaerobic_60MIN_ZN4B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_17720 and CSW01_17725 are separated by 118 nucleotidesCSW01_17725 and CSW01_17730 are separated by 30 nucleotides CSW01_17720: CSW01_17720 - pyruvate kinase, at 649,424 to 650,884 _17720 CSW01_17725: CSW01_17725 - TMAO reductase system sensor histidine kinase/response regulator TorS, at 651,003 to 653,957 _17725 CSW01_17730: CSW01_17730 - TMAO reductase system periplasmic protein TorT, at 653,988 to 655,037 _17730 Position (kb) 651 652 653 654Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 650.057 kb on - strand, within CSW01_17720at 650.120 kb on + strand, within CSW01_17720at 650.142 kb on + strand, within CSW01_17720at 650.150 kb on - strand, within CSW01_17720at 650.245 kb on + strand, within CSW01_17720at 650.247 kb on - strand, within CSW01_17720at 650.300 kb on + strand, within CSW01_17720at 650.357 kb on - strand, within CSW01_17720at 650.389 kb on + strand, within CSW01_17720at 650.389 kb on + strand, within CSW01_17720at 650.389 kb on + strand, within CSW01_17720at 650.389 kb on + strand, within CSW01_17720at 650.389 kb on + strand, within CSW01_17720at 650.389 kb on + strand, within CSW01_17720at 650.397 kb on - strand, within CSW01_17720at 650.397 kb on - strand, within CSW01_17720at 650.397 kb on - strand, within CSW01_17720at 650.399 kb on + strand, within CSW01_17720at 650.444 kb on - strand, within CSW01_17720at 650.504 kb on + strand, within CSW01_17720at 650.643 kb on + strand, within CSW01_17720at 650.675 kb on + strand, within CSW01_17720at 650.685 kb on + strand, within CSW01_17720at 650.685 kb on + strand, within CSW01_17720at 650.685 kb on + strand, within CSW01_17720at 650.685 kb on + strand, within CSW01_17720at 650.685 kb on + strand, within CSW01_17720at 650.839 kb on - strandat 650.863 kb on + strandat 650.865 kb on + strandat 650.871 kb on - strandat 650.873 kb on + strandat 650.937 kb on - strandat 651.137 kb on - strandat 651.187 kb on + strandat 651.217 kb on + strandat 651.217 kb on + strandat 651.217 kb on + strandat 651.217 kb on + strandat 651.217 kb on + strandat 651.217 kb on + strandat 651.217 kb on + strandat 651.217 kb on + strandat 651.217 kb on + strandat 651.217 kb on + strandat 651.217 kb on + strandat 651.217 kb on + strandat 651.217 kb on + strandat 651.217 kb on + strandat 651.217 kb on + strandat 651.217 kb on + strandat 651.217 kb on + strandat 651.217 kb on + strandat 651.217 kb on + strandat 651.217 kb on + strandat 651.225 kb on - strandat 651.225 kb on - strandat 651.225 kb on - strandat 651.225 kb on - strandat 651.225 kb on - strandat 651.225 kb on - strandat 651.225 kb on - strandat 651.225 kb on - strandat 651.225 kb on - strandat 651.225 kb on - strandat 651.225 kb on - strandat 651.225 kb on - strandat 651.225 kb on - strandat 651.225 kb on - strandat 651.229 kb on + strandat 651.241 kb on + strandat 651.254 kb on - strandat 651.287 kb on + strandat 651.294 kb on + strandat 651.324 kb on + strand, within CSW01_17725at 651.367 kb on + strand, within CSW01_17725at 651.420 kb on + strand, within CSW01_17725at 651.435 kb on - strand, within CSW01_17725at 651.676 kb on + strand, within CSW01_17725at 651.676 kb on + strand, within CSW01_17725at 651.699 kb on - strand, within CSW01_17725at 651.712 kb on + strand, within CSW01_17725at 651.736 kb on + strand, within CSW01_17725at 651.744 kb on - strand, within CSW01_17725at 651.748 kb on + strand, within CSW01_17725at 651.869 kb on - strand, within CSW01_17725at 651.978 kb on + strand, within CSW01_17725at 651.984 kb on + strand, within CSW01_17725at 651.984 kb on + strand, within CSW01_17725at 651.984 kb on + strand, within CSW01_17725at 651.984 kb on + strand, within CSW01_17725at 651.985 kb on + strand, within CSW01_17725at 651.992 kb on - strand, within CSW01_17725at 651.992 kb on - strand, within CSW01_17725at 651.992 kb on - strand, within CSW01_17725at 651.992 kb on - strand, within CSW01_17725at 651.992 kb on - strand, within CSW01_17725at 651.992 kb on - strand, within CSW01_17725at 651.992 kb on - strand, within CSW01_17725at 651.992 kb on - strand, within CSW01_17725at 651.992 kb on - strand, within CSW01_17725at 652.006 kb on - strand, within CSW01_17725at 652.028 kb on + strand, within CSW01_17725at 652.036 kb on - strand, within CSW01_17725at 652.098 kb on + strand, within CSW01_17725at 652.106 kb on - strand, within CSW01_17725at 652.198 kb on - strand, within CSW01_17725at 652.224 kb on + strand, within CSW01_17725at 652.244 kb on - strand, within CSW01_17725at 652.302 kb on + strand, within CSW01_17725at 652.303 kb on - strand, within CSW01_17725at 652.303 kb on - strand, within CSW01_17725at 652.328 kb on - strand, within CSW01_17725at 652.438 kb on - strand, within CSW01_17725at 652.438 kb on - strand, within CSW01_17725at 652.438 kb on - strand, within CSW01_17725at 652.440 kb on + strand, within CSW01_17725at 652.448 kb on - strand, within CSW01_17725at 652.506 kb on - strand, within CSW01_17725at 652.554 kb on - strand, within CSW01_17725at 652.563 kb on - strand, within CSW01_17725at 652.593 kb on + strand, within CSW01_17725at 652.601 kb on - strand, within CSW01_17725at 652.601 kb on - strand, within CSW01_17725at 652.601 kb on - strand, within CSW01_17725at 652.639 kb on + strand, within CSW01_17725at 652.639 kb on + strand, within CSW01_17725at 652.647 kb on - strand, within CSW01_17725at 652.755 kb on + strand, within CSW01_17725at 652.770 kb on + strand, within CSW01_17725at 652.771 kb on + strand, within CSW01_17725at 652.818 kb on - strand, within CSW01_17725at 652.839 kb on - strand, within CSW01_17725at 652.849 kb on - strand, within CSW01_17725at 652.849 kb on - strand, within CSW01_17725at 652.929 kb on + strand, within CSW01_17725at 652.937 kb on - strand, within CSW01_17725at 652.942 kb on - strand, within CSW01_17725at 652.966 kb on + strand, within CSW01_17725at 652.966 kb on + strand, within CSW01_17725at 652.966 kb on + strand, within CSW01_17725at 652.974 kb on - strand, within CSW01_17725at 652.974 kb on - strand, within CSW01_17725at 652.974 kb on - strand, within CSW01_17725at 652.974 kb on - strand, within CSW01_17725at 652.974 kb on - strand, within CSW01_17725at 652.974 kb on - strand, within CSW01_17725at 652.993 kb on - strand, within CSW01_17725at 653.011 kb on - strand, within CSW01_17725at 653.035 kb on + strand, within CSW01_17725at 653.090 kb on + strand, within CSW01_17725at 653.106 kb on - strand, within CSW01_17725at 653.106 kb on - strand, within CSW01_17725at 653.138 kb on + strand, within CSW01_17725at 653.138 kb on + strand, within CSW01_17725at 653.146 kb on - strand, within CSW01_17725at 653.146 kb on - strand, within CSW01_17725at 653.146 kb on - strand, within CSW01_17725at 653.146 kb on - strand, within CSW01_17725at 653.326 kb on - strand, within CSW01_17725at 653.388 kb on - strand, within CSW01_17725at 653.449 kb on - strand, within CSW01_17725at 653.545 kb on + strand, within CSW01_17725at 653.547 kb on + strand, within CSW01_17725at 653.606 kb on - strand, within CSW01_17725at 653.606 kb on - strand, within CSW01_17725at 653.614 kb on + strand, within CSW01_17725at 653.617 kb on - strand, within CSW01_17725at 653.617 kb on - strand, within CSW01_17725at 653.660 kb on + strand, within CSW01_17725at 653.750 kb on + strandat 653.758 kb on - strandat 653.780 kb on + strandat 653.879 kb on - strandat 653.998 kb on + strandat 653.998 kb on + strandat 654.011 kb on - strandat 654.015 kb on + strandat 654.054 kb on - strandat 654.196 kb on - strand, within CSW01_17730at 654.290 kb on - strand, within CSW01_17730at 654.450 kb on - strand, within CSW01_17730at 654.536 kb on - strand, within CSW01_17730at 654.585 kb on - strand, within CSW01_17730at 654.672 kb on + strand, within CSW01_17730at 654.673 kb on + strand, within CSW01_17730at 654.681 kb on - strand, within CSW01_17730at 654.686 kb on - strand, within CSW01_17730at 654.854 kb on + strand, within CSW01_17730

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_60MIN_ZN4B
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650,057 - CSW01_17720 0.43 -0.5
650,120 + CSW01_17720 0.48 +0.0
650,142 + CSW01_17720 0.49 +0.0
650,150 - CSW01_17720 0.50 -0.1
650,245 + CSW01_17720 0.56 +0.6
650,247 - CSW01_17720 0.56 -2.2
650,300 + CSW01_17720 0.60 +0.5
650,357 - CSW01_17720 0.64 +3.2
650,389 + CSW01_17720 0.66 -1.1
650,389 + CSW01_17720 0.66 -1.2
650,389 + CSW01_17720 0.66 +0.3
650,389 + CSW01_17720 0.66 -0.7
650,389 + CSW01_17720 0.66 -0.3
650,389 + CSW01_17720 0.66 +0.8
650,397 - CSW01_17720 0.67 +0.1
650,397 - CSW01_17720 0.67 +0.4
650,397 - CSW01_17720 0.67 -0.1
650,399 + CSW01_17720 0.67 -0.7
650,444 - CSW01_17720 0.70 +0.3
650,504 + CSW01_17720 0.74 -0.1
650,643 + CSW01_17720 0.83 -2.3
650,675 + CSW01_17720 0.86 +0.6
650,685 + CSW01_17720 0.86 -0.4
650,685 + CSW01_17720 0.86 -0.1
650,685 + CSW01_17720 0.86 -0.0
650,685 + CSW01_17720 0.86 -1.4
650,685 + CSW01_17720 0.86 +0.6
650,839 - -1.4
650,863 + -0.1
650,865 + +0.8
650,871 - +0.8
650,873 + +0.5
650,937 - +3.4
651,137 - +1.3
651,187 + +2.0
651,217 + -0.5
651,217 + -0.5
651,217 + +0.1
651,217 + +0.1
651,217 + +0.8
651,217 + -1.3
651,217 + +0.3
651,217 + +1.3
651,217 + +0.7
651,217 + -0.7
651,217 + +1.0
651,217 + +1.8
651,217 + -1.0
651,217 + -2.9
651,217 + -0.8
651,217 + -2.2
651,217 + -1.0
651,217 + -1.5
651,217 + +0.3
651,217 + -0.1
651,225 - +0.6
651,225 - +0.1
651,225 - -0.4
651,225 - +0.4
651,225 - -3.4
651,225 - -3.3
651,225 - -0.6
651,225 - -1.5
651,225 - -0.7
651,225 - +0.1
651,225 - +0.4
651,225 - +0.5
651,225 - +0.4
651,225 - -0.3
651,229 + +1.7
651,241 + +1.5
651,254 - +0.1
651,287 + +2.0
651,294 + -0.3
651,324 + CSW01_17725 0.11 +0.2
651,367 + CSW01_17725 0.12 -0.4
651,420 + CSW01_17725 0.14 -0.1
651,435 - CSW01_17725 0.15 +0.0
651,676 + CSW01_17725 0.23 +0.1
651,676 + CSW01_17725 0.23 +0.3
651,699 - CSW01_17725 0.24 -0.6
651,712 + CSW01_17725 0.24 +0.3
651,736 + CSW01_17725 0.25 +1.5
651,744 - CSW01_17725 0.25 -4.2
651,748 + CSW01_17725 0.25 +0.1
651,869 - CSW01_17725 0.29 +0.5
651,978 + CSW01_17725 0.33 +0.0
651,984 + CSW01_17725 0.33 -1.7
651,984 + CSW01_17725 0.33 +0.3
651,984 + CSW01_17725 0.33 -1.0
651,984 + CSW01_17725 0.33 +0.8
651,985 + CSW01_17725 0.33 +0.3
651,992 - CSW01_17725 0.33 -0.6
651,992 - CSW01_17725 0.33 -0.5
651,992 - CSW01_17725 0.33 -0.1
651,992 - CSW01_17725 0.33 -0.7
651,992 - CSW01_17725 0.33 +0.3
651,992 - CSW01_17725 0.33 +0.5
651,992 - CSW01_17725 0.33 -0.7
651,992 - CSW01_17725 0.33 -2.3
651,992 - CSW01_17725 0.33 +0.3
652,006 - CSW01_17725 0.34 +0.5
652,028 + CSW01_17725 0.35 -2.3
652,036 - CSW01_17725 0.35 +0.8
652,098 + CSW01_17725 0.37 -1.7
652,106 - CSW01_17725 0.37 +0.1
652,198 - CSW01_17725 0.40 +1.5
652,224 + CSW01_17725 0.41 +0.0
652,244 - CSW01_17725 0.42 -0.4
652,302 + CSW01_17725 0.44 +0.3
652,303 - CSW01_17725 0.44 -0.2
652,303 - CSW01_17725 0.44 +1.5
652,328 - CSW01_17725 0.45 +0.6
652,438 - CSW01_17725 0.49 -0.6
652,438 - CSW01_17725 0.49 -0.6
652,438 - CSW01_17725 0.49 +1.6
652,440 + CSW01_17725 0.49 -0.3
652,448 - CSW01_17725 0.49 +1.4
652,506 - CSW01_17725 0.51 -2.5
652,554 - CSW01_17725 0.52 +0.7
652,563 - CSW01_17725 0.53 -0.4
652,593 + CSW01_17725 0.54 -1.0
652,601 - CSW01_17725 0.54 -0.0
652,601 - CSW01_17725 0.54 +0.3
652,601 - CSW01_17725 0.54 +0.5
652,639 + CSW01_17725 0.55 -0.3
652,639 + CSW01_17725 0.55 +0.3
652,647 - CSW01_17725 0.56 -2.9
652,755 + CSW01_17725 0.59 -0.4
652,770 + CSW01_17725 0.60 +0.0
652,771 + CSW01_17725 0.60 -3.5
652,818 - CSW01_17725 0.61 +1.1
652,839 - CSW01_17725 0.62 -1.2
652,849 - CSW01_17725 0.62 +0.4
652,849 - CSW01_17725 0.62 +0.4
652,929 + CSW01_17725 0.65 +1.3
652,937 - CSW01_17725 0.65 -1.2
652,942 - CSW01_17725 0.66 +0.9
652,966 + CSW01_17725 0.66 +0.7
652,966 + CSW01_17725 0.66 +0.1
652,966 + CSW01_17725 0.66 -0.4
652,974 - CSW01_17725 0.67 +0.3
652,974 - CSW01_17725 0.67 +0.2
652,974 - CSW01_17725 0.67 -0.3
652,974 - CSW01_17725 0.67 +0.8
652,974 - CSW01_17725 0.67 +0.4
652,974 - CSW01_17725 0.67 -2.1
652,993 - CSW01_17725 0.67 +0.9
653,011 - CSW01_17725 0.68 +0.5
653,035 + CSW01_17725 0.69 -2.1
653,090 + CSW01_17725 0.71 -0.7
653,106 - CSW01_17725 0.71 +0.2
653,106 - CSW01_17725 0.71 +0.4
653,138 + CSW01_17725 0.72 -2.9
653,138 + CSW01_17725 0.72 -0.5
653,146 - CSW01_17725 0.73 -0.2
653,146 - CSW01_17725 0.73 -0.6
653,146 - CSW01_17725 0.73 +0.6
653,146 - CSW01_17725 0.73 +0.5
653,326 - CSW01_17725 0.79 -2.5
653,388 - CSW01_17725 0.81 -0.6
653,449 - CSW01_17725 0.83 -0.4
653,545 + CSW01_17725 0.86 -1.7
653,547 + CSW01_17725 0.86 +0.2
653,606 - CSW01_17725 0.88 -1.5
653,606 - CSW01_17725 0.88 -1.3
653,614 + CSW01_17725 0.88 -0.6
653,617 - CSW01_17725 0.88 -0.0
653,617 - CSW01_17725 0.88 -3.2
653,660 + CSW01_17725 0.90 +0.5
653,750 + -1.3
653,758 - +0.4
653,780 + +0.8
653,879 - +0.7
653,998 + +0.6
653,998 + +0.7
654,011 - -1.3
654,015 + -2.9
654,054 - +0.2
654,196 - CSW01_17730 0.20 +0.3
654,290 - CSW01_17730 0.29 +0.1
654,450 - CSW01_17730 0.44 -0.4
654,536 - CSW01_17730 0.52 +0.1
654,585 - CSW01_17730 0.57 -0.1
654,672 + CSW01_17730 0.65 -1.5
654,673 + CSW01_17730 0.65 -0.8
654,681 - CSW01_17730 0.66 +0.5
654,686 - CSW01_17730 0.66 +1.3
654,854 + CSW01_17730 0.82 +0.1

Or see this region's nucleotide sequence