Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17655

Experiment: LB_Anaerobic_60MIN_ZN4B

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_17650 and CSW01_17655 are separated by 670 nucleotidesCSW01_17655 and CSW01_17660 are separated by 3 nucleotides CSW01_17650: CSW01_17650 - beta-ketoacyl-ACP reductase, at 627,503 to 628,243 _17650 CSW01_17655: CSW01_17655 - protein translocase subunit SecF, at 628,914 to 629,816 _17655 CSW01_17660: CSW01_17660 - protein translocase subunit SecD, at 629,820 to 631,658 _17660 Position (kb) 628 629 630Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 627.923 kb on - strand, within CSW01_17650at 628.066 kb on + strand, within CSW01_17650at 628.074 kb on - strand, within CSW01_17650at 628.074 kb on - strand, within CSW01_17650at 628.122 kb on - strand, within CSW01_17650at 628.125 kb on + strand, within CSW01_17650at 628.178 kb on - strandat 628.198 kb on + strandat 628.249 kb on + strandat 628.250 kb on - strandat 628.282 kb on - strandat 628.290 kb on + strandat 628.290 kb on + strandat 628.290 kb on + strandat 628.292 kb on + strandat 628.298 kb on - strandat 628.298 kb on - strandat 628.310 kb on - strandat 628.315 kb on - strandat 628.325 kb on + strandat 628.330 kb on - strandat 628.330 kb on - strandat 628.670 kb on + strandat 628.689 kb on + strandat 628.716 kb on + strandat 628.724 kb on - strandat 628.724 kb on - strandat 628.893 kb on + strandat 628.947 kb on - strandat 628.950 kb on - strandat 628.955 kb on - strandat 628.956 kb on + strandat 628.975 kb on + strandat 628.979 kb on + strandat 628.980 kb on + strandat 628.982 kb on - strandat 628.984 kb on + strandat 629.062 kb on - strand, within CSW01_17655at 629.122 kb on + strand, within CSW01_17655at 629.195 kb on - strand, within CSW01_17655at 629.419 kb on + strand, within CSW01_17655at 629.502 kb on + strand, within CSW01_17655at 629.520 kb on + strand, within CSW01_17655at 629.528 kb on - strand, within CSW01_17655at 629.528 kb on - strand, within CSW01_17655at 629.551 kb on + strand, within CSW01_17655at 629.811 kb on + strandat 629.904 kb on + strandat 629.937 kb on + strandat 629.945 kb on - strandat 630.027 kb on + strand, within CSW01_17660at 630.035 kb on - strand, within CSW01_17660at 630.035 kb on - strand, within CSW01_17660at 630.065 kb on - strand, within CSW01_17660at 630.097 kb on - strand, within CSW01_17660at 630.143 kb on - strand, within CSW01_17660at 630.159 kb on + strand, within CSW01_17660at 630.159 kb on + strand, within CSW01_17660at 630.159 kb on + strand, within CSW01_17660at 630.159 kb on + strand, within CSW01_17660at 630.159 kb on + strand, within CSW01_17660at 630.159 kb on + strand, within CSW01_17660at 630.167 kb on - strand, within CSW01_17660at 630.167 kb on - strand, within CSW01_17660at 630.167 kb on - strand, within CSW01_17660at 630.172 kb on - strand, within CSW01_17660at 630.356 kb on + strand, within CSW01_17660at 630.502 kb on - strand, within CSW01_17660at 630.502 kb on - strand, within CSW01_17660at 630.634 kb on + strand, within CSW01_17660at 630.634 kb on + strand, within CSW01_17660at 630.648 kb on + strand, within CSW01_17660at 630.697 kb on - strand, within CSW01_17660

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_60MIN_ZN4B
remove
627,923 - CSW01_17650 0.57 -0.4
628,066 + CSW01_17650 0.76 -0.0
628,074 - CSW01_17650 0.77 -0.3
628,074 - CSW01_17650 0.77 -0.1
628,122 - CSW01_17650 0.84 -0.2
628,125 + CSW01_17650 0.84 -0.4
628,178 - +0.5
628,198 + -0.3
628,249 + -0.7
628,250 - +0.3
628,282 - +0.0
628,290 + +0.8
628,290 + +2.3
628,290 + +0.3
628,292 + -0.7
628,298 - +0.6
628,298 - +1.4
628,310 - +0.5
628,315 - +1.1
628,325 + -0.2
628,330 - +0.1
628,330 - +1.7
628,670 + -2.8
628,689 + -0.5
628,716 + -0.7
628,724 - +1.5
628,724 - -0.1
628,893 + -0.2
628,947 - -0.1
628,950 - +0.8
628,955 - -2.4
628,956 + +0.3
628,975 + -0.9
628,979 + -0.7
628,980 + +0.4
628,982 - +0.1
628,984 + +0.1
629,062 - CSW01_17655 0.16 +1.5
629,122 + CSW01_17655 0.23 +2.9
629,195 - CSW01_17655 0.31 +1.0
629,419 + CSW01_17655 0.56 -1.0
629,502 + CSW01_17655 0.65 -1.4
629,520 + CSW01_17655 0.67 +0.8
629,528 - CSW01_17655 0.68 -2.1
629,528 - CSW01_17655 0.68 -0.2
629,551 + CSW01_17655 0.71 -0.0
629,811 + -1.0
629,904 + -0.5
629,937 + +0.6
629,945 - -1.3
630,027 + CSW01_17660 0.11 +0.7
630,035 - CSW01_17660 0.12 -1.3
630,035 - CSW01_17660 0.12 -0.5
630,065 - CSW01_17660 0.13 +0.0
630,097 - CSW01_17660 0.15 +1.3
630,143 - CSW01_17660 0.18 +0.7
630,159 + CSW01_17660 0.18 +0.4
630,159 + CSW01_17660 0.18 +0.2
630,159 + CSW01_17660 0.18 +0.0
630,159 + CSW01_17660 0.18 +0.6
630,159 + CSW01_17660 0.18 -1.5
630,159 + CSW01_17660 0.18 -0.1
630,167 - CSW01_17660 0.19 -0.5
630,167 - CSW01_17660 0.19 -0.8
630,167 - CSW01_17660 0.19 -3.4
630,172 - CSW01_17660 0.19 +0.7
630,356 + CSW01_17660 0.29 -0.5
630,502 - CSW01_17660 0.37 +1.7
630,502 - CSW01_17660 0.37 -0.3
630,634 + CSW01_17660 0.44 +0.3
630,634 + CSW01_17660 0.44 -1.5
630,648 + CSW01_17660 0.45 -0.2
630,697 - CSW01_17660 0.48 +1.0

Or see this region's nucleotide sequence