Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17650

Experiment: LB_Anaerobic_60MIN_ZN4B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_17645 and CSW01_17650 are separated by 12 nucleotidesCSW01_17650 and CSW01_17655 are separated by 670 nucleotides CSW01_17645: CSW01_17645 - acetyl-CoA C-acetyltransferase, at 626,285 to 627,490 _17645 CSW01_17650: CSW01_17650 - beta-ketoacyl-ACP reductase, at 627,503 to 628,243 _17650 CSW01_17655: CSW01_17655 - protein translocase subunit SecF, at 628,914 to 629,816 _17655 Position (kb) 627 628 629Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 626.629 kb on - strand, within CSW01_17645at 626.630 kb on - strand, within CSW01_17645at 626.684 kb on - strand, within CSW01_17645at 626.798 kb on + strand, within CSW01_17645at 626.806 kb on - strand, within CSW01_17645at 626.834 kb on + strand, within CSW01_17645at 626.844 kb on - strand, within CSW01_17645at 626.981 kb on + strand, within CSW01_17645at 627.015 kb on + strand, within CSW01_17645at 627.188 kb on - strand, within CSW01_17645at 627.230 kb on - strand, within CSW01_17645at 627.230 kb on - strand, within CSW01_17645at 627.260 kb on - strand, within CSW01_17645at 627.308 kb on - strand, within CSW01_17645at 627.308 kb on - strand, within CSW01_17645at 627.308 kb on - strand, within CSW01_17645at 627.310 kb on + strand, within CSW01_17645at 627.310 kb on + strand, within CSW01_17645at 627.365 kb on - strand, within CSW01_17645at 627.365 kb on - strand, within CSW01_17645at 627.430 kb on - strandat 627.435 kb on + strandat 627.496 kb on + strandat 627.554 kb on - strandat 627.608 kb on + strand, within CSW01_17650at 627.685 kb on + strand, within CSW01_17650at 627.693 kb on - strand, within CSW01_17650at 627.693 kb on - strand, within CSW01_17650at 627.704 kb on - strand, within CSW01_17650at 627.740 kb on + strand, within CSW01_17650at 627.853 kb on - strand, within CSW01_17650at 627.887 kb on - strand, within CSW01_17650at 627.891 kb on - strand, within CSW01_17650at 627.908 kb on - strand, within CSW01_17650at 627.923 kb on - strand, within CSW01_17650at 628.066 kb on + strand, within CSW01_17650at 628.074 kb on - strand, within CSW01_17650at 628.074 kb on - strand, within CSW01_17650at 628.122 kb on - strand, within CSW01_17650at 628.125 kb on + strand, within CSW01_17650at 628.178 kb on - strandat 628.198 kb on + strandat 628.249 kb on + strandat 628.250 kb on - strandat 628.282 kb on - strandat 628.290 kb on + strandat 628.290 kb on + strandat 628.290 kb on + strandat 628.292 kb on + strandat 628.298 kb on - strandat 628.298 kb on - strandat 628.310 kb on - strandat 628.315 kb on - strandat 628.325 kb on + strandat 628.330 kb on - strandat 628.330 kb on - strandat 628.670 kb on + strandat 628.689 kb on + strandat 628.716 kb on + strandat 628.724 kb on - strandat 628.724 kb on - strandat 628.893 kb on + strandat 628.947 kb on - strandat 628.950 kb on - strandat 628.955 kb on - strandat 628.956 kb on + strandat 628.975 kb on + strandat 628.979 kb on + strandat 628.980 kb on + strandat 628.982 kb on - strandat 628.984 kb on + strandat 629.062 kb on - strand, within CSW01_17655at 629.122 kb on + strand, within CSW01_17655at 629.195 kb on - strand, within CSW01_17655

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_60MIN_ZN4B
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626,629 - CSW01_17645 0.29 -1.1
626,630 - CSW01_17645 0.29 +0.2
626,684 - CSW01_17645 0.33 +0.0
626,798 + CSW01_17645 0.43 +1.6
626,806 - CSW01_17645 0.43 +2.3
626,834 + CSW01_17645 0.46 -3.5
626,844 - CSW01_17645 0.46 +0.6
626,981 + CSW01_17645 0.58 +1.8
627,015 + CSW01_17645 0.61 -0.6
627,188 - CSW01_17645 0.75 +1.1
627,230 - CSW01_17645 0.78 -1.3
627,230 - CSW01_17645 0.78 -0.2
627,260 - CSW01_17645 0.81 -1.0
627,308 - CSW01_17645 0.85 -1.3
627,308 - CSW01_17645 0.85 -0.3
627,308 - CSW01_17645 0.85 -2.7
627,310 + CSW01_17645 0.85 -0.1
627,310 + CSW01_17645 0.85 -1.3
627,365 - CSW01_17645 0.90 +0.6
627,365 - CSW01_17645 0.90 +0.5
627,430 - +0.3
627,435 + -0.0
627,496 + -1.0
627,554 - +0.6
627,608 + CSW01_17650 0.14 -1.3
627,685 + CSW01_17650 0.25 -0.9
627,693 - CSW01_17650 0.26 -1.3
627,693 - CSW01_17650 0.26 +0.1
627,704 - CSW01_17650 0.27 -0.3
627,740 + CSW01_17650 0.32 -0.2
627,853 - CSW01_17650 0.47 +1.1
627,887 - CSW01_17650 0.52 -0.7
627,891 - CSW01_17650 0.52 +0.6
627,908 - CSW01_17650 0.55 -0.5
627,923 - CSW01_17650 0.57 -0.4
628,066 + CSW01_17650 0.76 -0.0
628,074 - CSW01_17650 0.77 -0.3
628,074 - CSW01_17650 0.77 -0.1
628,122 - CSW01_17650 0.84 -0.2
628,125 + CSW01_17650 0.84 -0.4
628,178 - +0.5
628,198 + -0.3
628,249 + -0.7
628,250 - +0.3
628,282 - +0.0
628,290 + +0.8
628,290 + +2.3
628,290 + +0.3
628,292 + -0.7
628,298 - +0.6
628,298 - +1.4
628,310 - +0.5
628,315 - +1.1
628,325 + -0.2
628,330 - +0.1
628,330 - +1.7
628,670 + -2.8
628,689 + -0.5
628,716 + -0.7
628,724 - +1.5
628,724 - -0.1
628,893 + -0.2
628,947 - -0.1
628,950 - +0.8
628,955 - -2.4
628,956 + +0.3
628,975 + -0.9
628,979 + -0.7
628,980 + +0.4
628,982 - +0.1
628,984 + +0.1
629,062 - CSW01_17655 0.16 +1.5
629,122 + CSW01_17655 0.23 +2.9
629,195 - CSW01_17655 0.31 +1.0

Or see this region's nucleotide sequence