Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17165

Experiment: LB_Anaerobic_60MIN_ZN4B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_17155 and CSW01_17160 are separated by 101 nucleotidesCSW01_17160 and CSW01_17165 overlap by 4 nucleotidesCSW01_17165 and CSW01_17170 are separated by 83 nucleotides CSW01_17155: CSW01_17155 - glutathione S-transferase, at 521,229 to 521,840 _17155 CSW01_17160: CSW01_17160 - TetR/AcrR family transcriptional regulator, at 521,942 to 522,538 _17160 CSW01_17165: CSW01_17165 - DUF296 domain-containing protein, at 522,535 to 522,927 _17165 CSW01_17170: CSW01_17170 - ABC transporter ATP-binding protein, at 523,011 to 524,603 _17170 Position (kb) 522 523Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 521.644 kb on + strand, within CSW01_17155at 521.654 kb on + strand, within CSW01_17155at 521.654 kb on + strand, within CSW01_17155at 521.654 kb on + strand, within CSW01_17155at 521.654 kb on + strand, within CSW01_17155at 521.654 kb on + strand, within CSW01_17155at 521.654 kb on + strand, within CSW01_17155at 521.654 kb on + strand, within CSW01_17155at 521.654 kb on + strand, within CSW01_17155at 521.656 kb on + strand, within CSW01_17155at 521.656 kb on + strand, within CSW01_17155at 521.656 kb on + strand, within CSW01_17155at 521.662 kb on - strand, within CSW01_17155at 521.662 kb on - strand, within CSW01_17155at 521.662 kb on - strand, within CSW01_17155at 521.664 kb on - strand, within CSW01_17155at 521.664 kb on - strand, within CSW01_17155at 521.664 kb on - strand, within CSW01_17155at 521.670 kb on - strand, within CSW01_17155at 521.702 kb on - strand, within CSW01_17155at 521.702 kb on - strand, within CSW01_17155at 521.808 kb on + strandat 522.071 kb on - strand, within CSW01_17160at 522.221 kb on + strand, within CSW01_17160at 522.229 kb on - strand, within CSW01_17160at 522.400 kb on + strand, within CSW01_17160at 522.410 kb on - strand, within CSW01_17160at 522.427 kb on + strand, within CSW01_17160at 522.435 kb on - strand, within CSW01_17160at 522.455 kb on + strand, within CSW01_17160at 522.455 kb on + strand, within CSW01_17160at 522.509 kb on - strandat 522.534 kb on - strandat 522.558 kb on - strandat 522.610 kb on + strand, within CSW01_17165at 522.610 kb on + strand, within CSW01_17165at 522.618 kb on - strand, within CSW01_17165at 522.637 kb on - strand, within CSW01_17165at 522.800 kb on - strand, within CSW01_17165at 522.858 kb on - strand, within CSW01_17165at 522.913 kb on + strandat 523.042 kb on + strandat 523.048 kb on - strandat 523.071 kb on + strandat 523.071 kb on + strandat 523.079 kb on - strandat 523.113 kb on - strandat 523.135 kb on + strandat 523.236 kb on + strand, within CSW01_17170at 523.247 kb on + strand, within CSW01_17170at 523.284 kb on - strand, within CSW01_17170at 523.422 kb on - strand, within CSW01_17170at 523.449 kb on - strand, within CSW01_17170at 523.449 kb on - strand, within CSW01_17170at 523.494 kb on - strand, within CSW01_17170at 523.550 kb on - strand, within CSW01_17170at 523.634 kb on - strand, within CSW01_17170at 523.688 kb on - strand, within CSW01_17170at 523.713 kb on + strand, within CSW01_17170at 523.713 kb on + strand, within CSW01_17170at 523.720 kb on - strand, within CSW01_17170at 523.844 kb on + strand, within CSW01_17170at 523.846 kb on + strand, within CSW01_17170at 523.852 kb on - strand, within CSW01_17170

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_60MIN_ZN4B
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521,644 + CSW01_17155 0.68 -0.4
521,654 + CSW01_17155 0.69 +0.8
521,654 + CSW01_17155 0.69 +0.0
521,654 + CSW01_17155 0.69 -2.8
521,654 + CSW01_17155 0.69 -1.0
521,654 + CSW01_17155 0.69 -3.6
521,654 + CSW01_17155 0.69 -0.2
521,654 + CSW01_17155 0.69 -0.2
521,654 + CSW01_17155 0.69 +0.7
521,656 + CSW01_17155 0.70 -2.8
521,656 + CSW01_17155 0.70 -0.0
521,656 + CSW01_17155 0.70 -0.5
521,662 - CSW01_17155 0.71 +0.3
521,662 - CSW01_17155 0.71 -3.3
521,662 - CSW01_17155 0.71 -1.6
521,664 - CSW01_17155 0.71 -1.1
521,664 - CSW01_17155 0.71 -0.5
521,664 - CSW01_17155 0.71 -0.7
521,670 - CSW01_17155 0.72 -0.7
521,702 - CSW01_17155 0.77 +2.2
521,702 - CSW01_17155 0.77 +0.4
521,808 + -0.5
522,071 - CSW01_17160 0.22 -1.2
522,221 + CSW01_17160 0.47 -1.5
522,229 - CSW01_17160 0.48 +0.6
522,400 + CSW01_17160 0.77 +1.4
522,410 - CSW01_17160 0.78 +0.4
522,427 + CSW01_17160 0.81 -0.1
522,435 - CSW01_17160 0.83 -0.9
522,455 + CSW01_17160 0.86 +1.8
522,455 + CSW01_17160 0.86 -1.5
522,509 - +0.2
522,534 - -3.1
522,558 - -0.4
522,610 + CSW01_17165 0.19 -1.3
522,610 + CSW01_17165 0.19 +0.9
522,618 - CSW01_17165 0.21 -0.6
522,637 - CSW01_17165 0.26 -0.4
522,800 - CSW01_17165 0.67 -0.7
522,858 - CSW01_17165 0.82 -0.4
522,913 + +0.8
523,042 + -0.8
523,048 - +0.5
523,071 + -1.0
523,071 + +3.1
523,079 - +0.2
523,113 - -1.5
523,135 + +0.9
523,236 + CSW01_17170 0.14 -2.1
523,247 + CSW01_17170 0.15 -1.6
523,284 - CSW01_17170 0.17 +2.2
523,422 - CSW01_17170 0.26 +1.2
523,449 - CSW01_17170 0.27 -0.3
523,449 - CSW01_17170 0.27 -0.8
523,494 - CSW01_17170 0.30 -1.8
523,550 - CSW01_17170 0.34 -0.9
523,634 - CSW01_17170 0.39 -0.8
523,688 - CSW01_17170 0.42 +1.1
523,713 + CSW01_17170 0.44 -1.6
523,713 + CSW01_17170 0.44 +0.4
523,720 - CSW01_17170 0.45 +0.0
523,844 + CSW01_17170 0.52 +0.2
523,846 + CSW01_17170 0.52 +0.5
523,852 - CSW01_17170 0.53 +0.1

Or see this region's nucleotide sequence