Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17155

Experiment: LB_Anaerobic_60MIN_ZN4B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_17145 and CSW01_17150 are separated by 85 nucleotidesCSW01_17150 and CSW01_17155 are separated by 11 nucleotidesCSW01_17155 and CSW01_17160 are separated by 101 nucleotidesCSW01_17160 and CSW01_17165 overlap by 4 nucleotides CSW01_17145: CSW01_17145 - ABC transporter substrate-binding protein, at 519,678 to 520,463 _17145 CSW01_17150: CSW01_17150 - thiol:disulfide oxidoreductase, at 520,549 to 521,217 _17150 CSW01_17155: CSW01_17155 - glutathione S-transferase, at 521,229 to 521,840 _17155 CSW01_17160: CSW01_17160 - TetR/AcrR family transcriptional regulator, at 521,942 to 522,538 _17160 CSW01_17165: CSW01_17165 - DUF296 domain-containing protein, at 522,535 to 522,927 _17165 Position (kb) 521 522Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 520.371 kb on - strand, within CSW01_17145at 520.410 kb on - strandat 520.410 kb on - strandat 520.458 kb on + strandat 520.495 kb on + strandat 520.497 kb on + strandat 520.503 kb on - strandat 520.575 kb on + strandat 520.592 kb on + strandat 520.603 kb on + strandat 520.617 kb on + strand, within CSW01_17150at 520.618 kb on + strand, within CSW01_17150at 520.624 kb on + strand, within CSW01_17150at 520.625 kb on - strand, within CSW01_17150at 520.626 kb on - strand, within CSW01_17150at 520.632 kb on - strand, within CSW01_17150at 520.668 kb on + strand, within CSW01_17150at 520.669 kb on - strand, within CSW01_17150at 520.679 kb on - strand, within CSW01_17150at 520.724 kb on + strand, within CSW01_17150at 520.802 kb on + strand, within CSW01_17150at 520.885 kb on + strand, within CSW01_17150at 520.989 kb on + strand, within CSW01_17150at 521.024 kb on - strand, within CSW01_17150at 521.121 kb on + strand, within CSW01_17150at 521.150 kb on - strand, within CSW01_17150at 521.157 kb on + strandat 521.402 kb on + strand, within CSW01_17155at 521.434 kb on + strand, within CSW01_17155at 521.442 kb on + strand, within CSW01_17155at 521.644 kb on + strand, within CSW01_17155at 521.654 kb on + strand, within CSW01_17155at 521.654 kb on + strand, within CSW01_17155at 521.654 kb on + strand, within CSW01_17155at 521.654 kb on + strand, within CSW01_17155at 521.654 kb on + strand, within CSW01_17155at 521.654 kb on + strand, within CSW01_17155at 521.654 kb on + strand, within CSW01_17155at 521.654 kb on + strand, within CSW01_17155at 521.656 kb on + strand, within CSW01_17155at 521.656 kb on + strand, within CSW01_17155at 521.656 kb on + strand, within CSW01_17155at 521.662 kb on - strand, within CSW01_17155at 521.662 kb on - strand, within CSW01_17155at 521.662 kb on - strand, within CSW01_17155at 521.664 kb on - strand, within CSW01_17155at 521.664 kb on - strand, within CSW01_17155at 521.664 kb on - strand, within CSW01_17155at 521.670 kb on - strand, within CSW01_17155at 521.702 kb on - strand, within CSW01_17155at 521.702 kb on - strand, within CSW01_17155at 521.808 kb on + strandat 522.071 kb on - strand, within CSW01_17160at 522.221 kb on + strand, within CSW01_17160at 522.229 kb on - strand, within CSW01_17160at 522.400 kb on + strand, within CSW01_17160at 522.410 kb on - strand, within CSW01_17160at 522.427 kb on + strand, within CSW01_17160at 522.435 kb on - strand, within CSW01_17160at 522.455 kb on + strand, within CSW01_17160at 522.455 kb on + strand, within CSW01_17160at 522.509 kb on - strandat 522.534 kb on - strandat 522.558 kb on - strandat 522.610 kb on + strand, within CSW01_17165at 522.610 kb on + strand, within CSW01_17165at 522.618 kb on - strand, within CSW01_17165at 522.637 kb on - strand, within CSW01_17165at 522.800 kb on - strand, within CSW01_17165

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_60MIN_ZN4B
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520,371 - CSW01_17145 0.88 +1.2
520,410 - -1.4
520,410 - +0.9
520,458 + -1.2
520,495 + +0.0
520,497 + -0.3
520,503 - +1.2
520,575 + -1.1
520,592 + +0.4
520,603 + +0.0
520,617 + CSW01_17150 0.10 -1.0
520,618 + CSW01_17150 0.10 +0.3
520,624 + CSW01_17150 0.11 +0.6
520,625 - CSW01_17150 0.11 -0.7
520,626 - CSW01_17150 0.12 -4.7
520,632 - CSW01_17150 0.12 +0.1
520,668 + CSW01_17150 0.18 +0.7
520,669 - CSW01_17150 0.18 +0.2
520,679 - CSW01_17150 0.19 -1.8
520,724 + CSW01_17150 0.26 -0.0
520,802 + CSW01_17150 0.38 -0.4
520,885 + CSW01_17150 0.50 +0.5
520,989 + CSW01_17150 0.66 +0.2
521,024 - CSW01_17150 0.71 +0.9
521,121 + CSW01_17150 0.86 +0.5
521,150 - CSW01_17150 0.90 +1.0
521,157 + +0.5
521,402 + CSW01_17155 0.28 -3.1
521,434 + CSW01_17155 0.33 -0.0
521,442 + CSW01_17155 0.35 -0.9
521,644 + CSW01_17155 0.68 -0.4
521,654 + CSW01_17155 0.69 +0.8
521,654 + CSW01_17155 0.69 +0.0
521,654 + CSW01_17155 0.69 -2.8
521,654 + CSW01_17155 0.69 -1.0
521,654 + CSW01_17155 0.69 -3.6
521,654 + CSW01_17155 0.69 -0.2
521,654 + CSW01_17155 0.69 -0.2
521,654 + CSW01_17155 0.69 +0.7
521,656 + CSW01_17155 0.70 -2.8
521,656 + CSW01_17155 0.70 -0.0
521,656 + CSW01_17155 0.70 -0.5
521,662 - CSW01_17155 0.71 +0.3
521,662 - CSW01_17155 0.71 -3.3
521,662 - CSW01_17155 0.71 -1.6
521,664 - CSW01_17155 0.71 -1.1
521,664 - CSW01_17155 0.71 -0.5
521,664 - CSW01_17155 0.71 -0.7
521,670 - CSW01_17155 0.72 -0.7
521,702 - CSW01_17155 0.77 +2.2
521,702 - CSW01_17155 0.77 +0.4
521,808 + -0.5
522,071 - CSW01_17160 0.22 -1.2
522,221 + CSW01_17160 0.47 -1.5
522,229 - CSW01_17160 0.48 +0.6
522,400 + CSW01_17160 0.77 +1.4
522,410 - CSW01_17160 0.78 +0.4
522,427 + CSW01_17160 0.81 -0.1
522,435 - CSW01_17160 0.83 -0.9
522,455 + CSW01_17160 0.86 +1.8
522,455 + CSW01_17160 0.86 -1.5
522,509 - +0.2
522,534 - -3.1
522,558 - -0.4
522,610 + CSW01_17165 0.19 -1.3
522,610 + CSW01_17165 0.19 +0.9
522,618 - CSW01_17165 0.21 -0.6
522,637 - CSW01_17165 0.26 -0.4
522,800 - CSW01_17165 0.67 -0.7

Or see this region's nucleotide sequence