Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_16715

Experiment: LB_Anaerobic_60MIN_ZN4B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_16700 and CSW01_16705 overlap by 59 nucleotidesCSW01_16705 and CSW01_16710 are separated by 135 nucleotidesCSW01_16710 and CSW01_16715 are separated by 43 nucleotidesCSW01_16715 and CSW01_16720 are separated by 63 nucleotidesCSW01_16720 and CSW01_16725 are separated by 174 nucleotides CSW01_16700: CSW01_16700 - hypothetical protein, at 425,521 to 425,721 _16700 CSW01_16705: CSW01_16705 - hypothetical protein, at 425,663 to 426,052 _16705 CSW01_16710: CSW01_16710 - acetyltransferase, at 426,188 to 426,472 _16710 CSW01_16715: CSW01_16715 - IS200/IS605 family transposase, at 426,516 to 426,953 _16715 CSW01_16720: CSW01_16720 - GNAT family N-acetyltransferase, at 427,017 to 427,235 _16720 CSW01_16725: CSW01_16725 - DUF3800 domain-containing protein, at 427,410 to 428,282 _16725 Position (kb) 426 427Strain fitness (log2 ratio) -2 -1 0 1at 425.642 kb on - strand, within CSW01_16700at 425.969 kb on + strand, within CSW01_16705at 425.974 kb on + strand, within CSW01_16705at 425.986 kb on + strand, within CSW01_16705at 426.010 kb on - strand, within CSW01_16705at 426.181 kb on - strandat 427.232 kb on - strandat 427.250 kb on - strandat 427.250 kb on - strandat 427.533 kb on - strand, within CSW01_16725at 427.603 kb on - strand, within CSW01_16725at 427.628 kb on + strand, within CSW01_16725at 427.679 kb on + strand, within CSW01_16725at 427.713 kb on + strand, within CSW01_16725at 427.713 kb on + strand, within CSW01_16725at 427.721 kb on - strand, within CSW01_16725at 427.721 kb on - strand, within CSW01_16725at 427.875 kb on + strand, within CSW01_16725at 427.875 kb on + strand, within CSW01_16725at 427.875 kb on + strand, within CSW01_16725at 427.875 kb on + strand, within CSW01_16725at 427.883 kb on - strand, within CSW01_16725at 427.883 kb on - strand, within CSW01_16725at 427.895 kb on + strand, within CSW01_16725at 427.895 kb on - strand, within CSW01_16725at 427.895 kb on - strand, within CSW01_16725at 427.902 kb on + strand, within CSW01_16725

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_60MIN_ZN4B
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425,642 - CSW01_16700 0.60 +0.3
425,969 + CSW01_16705 0.78 -2.1
425,974 + CSW01_16705 0.80 +0.1
425,986 + CSW01_16705 0.83 -0.3
426,010 - CSW01_16705 0.89 +0.2
426,181 - -1.3
427,232 - -0.1
427,250 - +0.4
427,250 - -0.5
427,533 - CSW01_16725 0.14 +1.6
427,603 - CSW01_16725 0.22 -0.4
427,628 + CSW01_16725 0.25 +0.6
427,679 + CSW01_16725 0.31 +0.4
427,713 + CSW01_16725 0.35 -0.1
427,713 + CSW01_16725 0.35 +0.8
427,721 - CSW01_16725 0.36 +0.1
427,721 - CSW01_16725 0.36 -0.6
427,875 + CSW01_16725 0.53 -0.3
427,875 + CSW01_16725 0.53 -0.0
427,875 + CSW01_16725 0.53 -1.7
427,875 + CSW01_16725 0.53 -2.7
427,883 - CSW01_16725 0.54 +0.7
427,883 - CSW01_16725 0.54 -0.2
427,895 + CSW01_16725 0.56 -0.5
427,895 - CSW01_16725 0.56 -0.1
427,895 - CSW01_16725 0.56 -0.8
427,902 + CSW01_16725 0.56 -1.1

Or see this region's nucleotide sequence