Experiment: LB_Anaerobic_60MIN_ZN4B
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_16450 and CSW01_16455 are separated by 232 nucleotides CSW01_16455 and CSW01_16460 overlap by 10 nucleotides CSW01_16460 and CSW01_16465 are separated by 83 nucleotides CSW01_16465 and CSW01_16470 overlap by 49 nucleotides CSW01_16470 and CSW01_16475 are separated by 322 nucleotides
CSW01_16450: CSW01_16450 - sulfate transporter subunit, at 403,348 to 404,333
_16450
CSW01_16455: CSW01_16455 - DJ-1/PfpI family protein, at 404,566 to 405,162
_16455
CSW01_16460: CSW01_16460 - acetyltransferase, at 405,153 to 405,290
_16460
CSW01_16465: CSW01_16465 - general secretion pathway protein GspH, at 405,374 to 405,514
_16465
CSW01_16470: CSW01_16470 - DUF645 domain-containing protein, at 405,466 to 405,636
_16470
CSW01_16475: CSW01_16475 - hypothetical protein, at 405,959 to 406,573
_16475
Position (kb) 405
406 Strain fitness (log2 ratio) -2
-1
0
1
2 at 404.154 kb on - strand, within CSW01_16450 at 404.154 kb on - strand, within CSW01_16450 at 404.160 kb on + strand, within CSW01_16450 at 404.214 kb on + strand, within CSW01_16450 at 404.214 kb on + strand, within CSW01_16450 at 404.222 kb on - strand, within CSW01_16450 at 404.222 kb on - strand, within CSW01_16450 at 404.267 kb on - strand at 404.462 kb on - strand at 404.462 kb on - strand at 404.630 kb on + strand, within CSW01_16455 at 404.631 kb on + strand, within CSW01_16455 at 404.655 kb on - strand, within CSW01_16455 at 404.665 kb on + strand, within CSW01_16455 at 404.814 kb on - strand, within CSW01_16455 at 404.859 kb on + strand, within CSW01_16455 at 404.974 kb on + strand, within CSW01_16455 at 405.023 kb on + strand, within CSW01_16455 at 405.030 kb on + strand, within CSW01_16455 at 405.109 kb on - strand at 405.144 kb on - strand at 405.191 kb on - strand, within CSW01_16460 at 405.196 kb on - strand, within CSW01_16460 at 405.560 kb on - strand, within CSW01_16470 at 405.565 kb on - strand, within CSW01_16470 at 405.875 kb on + strand at 405.875 kb on + strand at 405.875 kb on + strand at 405.875 kb on + strand at 405.875 kb on + strand at 405.875 kb on + strand at 405.875 kb on - strand at 405.883 kb on - strand at 405.883 kb on - strand at 405.883 kb on - strand at 405.890 kb on - strand at 406.127 kb on + strand, within CSW01_16475 at 406.127 kb on + strand, within CSW01_16475 at 406.127 kb on + strand, within CSW01_16475 at 406.127 kb on + strand, within CSW01_16475 at 406.127 kb on + strand, within CSW01_16475 at 406.127 kb on + strand, within CSW01_16475 at 406.127 kb on + strand, within CSW01_16475 at 406.127 kb on + strand, within CSW01_16475 at 406.127 kb on + strand, within CSW01_16475 at 406.127 kb on + strand, within CSW01_16475 at 406.135 kb on - strand, within CSW01_16475 at 406.135 kb on - strand, within CSW01_16475 at 406.173 kb on + strand, within CSW01_16475 at 406.181 kb on - strand, within CSW01_16475 at 406.181 kb on - strand, within CSW01_16475 at 406.209 kb on + strand, within CSW01_16475 at 406.209 kb on + strand, within CSW01_16475 at 406.217 kb on - strand, within CSW01_16475 at 406.221 kb on + strand, within CSW01_16475 at 406.229 kb on + strand, within CSW01_16475 at 406.229 kb on - strand, within CSW01_16475 at 406.264 kb on + strand, within CSW01_16475 at 406.274 kb on + strand, within CSW01_16475 at 406.275 kb on + strand, within CSW01_16475 at 406.282 kb on - strand, within CSW01_16475
Per-strain Table
Position Strand Gene LocusTag Fraction LB_Anaerobic_60MIN_ZN4B remove 404,154 - CSW01_16450 0.82 -1.0 404,154 - CSW01_16450 0.82 -0.2 404,160 + CSW01_16450 0.82 -0.3 404,214 + CSW01_16450 0.88 +0.5 404,214 + CSW01_16450 0.88 +1.3 404,222 - CSW01_16450 0.89 -0.7 404,222 - CSW01_16450 0.89 +0.9 404,267 - +0.2 404,462 - +0.5 404,462 - -0.1 404,630 + CSW01_16455 0.11 +0.3 404,631 + CSW01_16455 0.11 +1.3 404,655 - CSW01_16455 0.15 +0.4 404,665 + CSW01_16455 0.17 -0.1 404,814 - CSW01_16455 0.42 -0.8 404,859 + CSW01_16455 0.49 +1.2 404,974 + CSW01_16455 0.68 -0.6 405,023 + CSW01_16455 0.77 -0.6 405,030 + CSW01_16455 0.78 -0.1 405,109 - -0.2 405,144 - -0.3 405,191 - CSW01_16460 0.28 -0.9 405,196 - CSW01_16460 0.31 -1.0 405,560 - CSW01_16470 0.55 +0.1 405,565 - CSW01_16470 0.58 -0.9 405,875 + -0.1 405,875 + -2.0 405,875 + -2.3 405,875 + -0.4 405,875 + +0.5 405,875 + -0.9 405,875 - -2.1 405,883 - -0.9 405,883 - -0.5 405,883 - -1.6 405,890 - -0.1 406,127 + CSW01_16475 0.27 -0.3 406,127 + CSW01_16475 0.27 -1.1 406,127 + CSW01_16475 0.27 +1.0 406,127 + CSW01_16475 0.27 -0.1 406,127 + CSW01_16475 0.27 -1.0 406,127 + CSW01_16475 0.27 -0.7 406,127 + CSW01_16475 0.27 -0.0 406,127 + CSW01_16475 0.27 +0.1 406,127 + CSW01_16475 0.27 -0.4 406,127 + CSW01_16475 0.27 -2.0 406,135 - CSW01_16475 0.29 +1.8 406,135 - CSW01_16475 0.29 -0.5 406,173 + CSW01_16475 0.35 -0.1 406,181 - CSW01_16475 0.36 -0.2 406,181 - CSW01_16475 0.36 -0.4 406,209 + CSW01_16475 0.41 -0.7 406,209 + CSW01_16475 0.41 -0.1 406,217 - CSW01_16475 0.42 -0.6 406,221 + CSW01_16475 0.43 -0.4 406,229 + CSW01_16475 0.44 -0.4 406,229 - CSW01_16475 0.44 +1.2 406,264 + CSW01_16475 0.50 -1.1 406,274 + CSW01_16475 0.51 -2.2 406,275 + CSW01_16475 0.51 -1.1 406,282 - CSW01_16475 0.53 -0.1
Or see this region's nucleotide sequence