Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_16310

Experiment: LB_Anaerobic_60MIN_ZN4B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_16300 and CSW01_16305 are separated by 175 nucleotidesCSW01_16305 and CSW01_16310 are separated by 325 nucleotidesCSW01_16310 and CSW01_16315 are separated by 269 nucleotidesCSW01_16315 and CSW01_16320 are separated by 173 nucleotides CSW01_16295: CSW01_16295 - DUF1196 domain-containing protein, at 387,978 to 388,136 _16295 CSW01_16300: CSW01_16300 - transcriptional regulator, at 388,053 to 388,190 _16300 CSW01_16305: CSW01_16305 - hypothetical protein, at 388,366 to 388,791 _16305 CSW01_16310: CSW01_16310 - DUF3709 domain-containing protein, at 389,117 to 389,350 _16310 CSW01_16315: CSW01_16315 - hypothetical protein, at 389,620 to 389,934 _16315 CSW01_16320: CSW01_16320 - VOC family protein, at 390,108 to 390,542 _16320 Position (kb) 389 390Strain fitness (log2 ratio) -3 -2 -1 0 1at 389.138 kb on - strandat 389.162 kb on - strand, within CSW01_16310at 389.184 kb on + strand, within CSW01_16310at 389.463 kb on - strandat 389.478 kb on - strandat 390.175 kb on + strand, within CSW01_16320at 390.225 kb on + strand, within CSW01_16320at 390.225 kb on + strand, within CSW01_16320at 390.233 kb on - strand, within CSW01_16320at 390.277 kb on - strand, within CSW01_16320

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_60MIN_ZN4B
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389,138 - +1.6
389,162 - CSW01_16310 0.19 -0.4
389,184 + CSW01_16310 0.29 -0.4
389,463 - -0.2
389,478 - -3.3
390,175 + CSW01_16320 0.15 -0.5
390,225 + CSW01_16320 0.27 +1.1
390,225 + CSW01_16320 0.27 -1.1
390,233 - CSW01_16320 0.29 +0.1
390,277 - CSW01_16320 0.39 -1.3

Or see this region's nucleotide sequence