Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_15965

Experiment: LB_Anaerobic_60MIN_ZN4B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_15955 and CSW01_15960 are separated by 252 nucleotidesCSW01_15960 and CSW01_15965 are separated by 302 nucleotidesCSW01_15965 and CSW01_15970 are separated by 176 nucleotidesCSW01_15970 and CSW01_15975 are separated by 143 nucleotides CSW01_15955: CSW01_15955 - DUF3709 domain-containing protein, at 358,147 to 358,470 _15955 CSW01_15960: CSW01_15960 - hypothetical protein, at 358,723 to 359,118 _15960 CSW01_15965: CSW01_15965 - DUF645 domain-containing protein, at 359,421 to 359,602 _15965 CSW01_15970: CSW01_15970 - hypothetical protein, at 359,779 to 360,174 _15970 CSW01_15975: CSW01_15975 - nitrate reductase, at 360,318 to 360,854 _15975 Position (kb) 359 360Strain fitness (log2 ratio) -3 -2 -1 0 1at 358.496 kb on - strandat 359.502 kb on + strand, within CSW01_15965at 359.502 kb on + strand, within CSW01_15965at 359.502 kb on + strand, within CSW01_15965at 359.510 kb on - strand, within CSW01_15965at 359.578 kb on + strand, within CSW01_15965at 359.667 kb on + strandat 359.712 kb on - strandat 360.367 kb on - strandat 360.376 kb on + strand, within CSW01_15975at 360.384 kb on - strand, within CSW01_15975at 360.401 kb on + strand, within CSW01_15975at 360.443 kb on - strand, within CSW01_15975at 360.457 kb on + strand, within CSW01_15975at 360.457 kb on + strand, within CSW01_15975at 360.457 kb on + strand, within CSW01_15975at 360.465 kb on - strand, within CSW01_15975at 360.465 kb on - strand, within CSW01_15975

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_60MIN_ZN4B
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358,496 - -2.2
359,502 + CSW01_15965 0.45 +1.4
359,502 + CSW01_15965 0.45 +1.3
359,502 + CSW01_15965 0.45 +0.6
359,510 - CSW01_15965 0.49 +0.1
359,578 + CSW01_15965 0.86 -3.7
359,667 + -0.1
359,712 - +0.3
360,367 - -1.2
360,376 + CSW01_15975 0.11 +0.4
360,384 - CSW01_15975 0.12 +0.8
360,401 + CSW01_15975 0.15 +0.4
360,443 - CSW01_15975 0.23 +0.1
360,457 + CSW01_15975 0.26 -1.7
360,457 + CSW01_15975 0.26 +0.6
360,457 + CSW01_15975 0.26 +0.6
360,465 - CSW01_15975 0.27 +0.7
360,465 - CSW01_15975 0.27 +1.2

Or see this region's nucleotide sequence