Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_15895

Experiment: LB_Anaerobic_60MIN_ZN4B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_15880 and CSW01_15885 are separated by 3 nucleotidesCSW01_15885 and CSW01_15890 are separated by 59 nucleotidesCSW01_15890 and CSW01_15895 are separated by 202 nucleotidesCSW01_15895 and CSW01_15900 are separated by 213 nucleotidesCSW01_15900 and CSW01_15905 are separated by 2 nucleotidesCSW01_15905 and CSW01_15910 are separated by 56 nucleotides CSW01_15880: CSW01_15880 - hypothetical protein, at 348,576 to 349,154 _15880 CSW01_15885: CSW01_15885 - DUF3265 domain-containing protein, at 349,158 to 349,268 _15885 CSW01_15890: CSW01_15890 - hypothetical protein, at 349,328 to 349,489 _15890 CSW01_15895: CSW01_15895 - hypothetical protein, at 349,692 to 350,375 _15895 CSW01_15900: CSW01_15900 - hypothetical protein, at 350,589 to 350,855 _15900 CSW01_15905: CSW01_15905 - hypothetical protein, at 350,858 to 350,953 _15905 CSW01_15910: CSW01_15910 - hypothetical protein, at 351,010 to 351,609 _15910 Position (kb) 349 350 351Strain fitness (log2 ratio) -2 -1 0 1 2at 348.738 kb on + strand, within CSW01_15880at 348.738 kb on + strand, within CSW01_15880at 348.738 kb on + strand, within CSW01_15880at 348.738 kb on + strand, within CSW01_15880at 348.738 kb on + strand, within CSW01_15880at 348.738 kb on + strand, within CSW01_15880at 348.746 kb on - strand, within CSW01_15880at 348.746 kb on - strand, within CSW01_15880at 348.746 kb on - strand, within CSW01_15880at 348.746 kb on - strand, within CSW01_15880at 348.746 kb on - strand, within CSW01_15880at 348.746 kb on - strand, within CSW01_15880at 348.746 kb on - strand, within CSW01_15880at 348.746 kb on - strand, within CSW01_15880at 348.771 kb on + strand, within CSW01_15880at 348.816 kb on - strand, within CSW01_15880at 348.835 kb on - strand, within CSW01_15880at 348.835 kb on - strand, within CSW01_15880at 348.898 kb on + strand, within CSW01_15880at 348.915 kb on + strand, within CSW01_15880at 348.921 kb on - strand, within CSW01_15880at 348.942 kb on + strand, within CSW01_15880at 348.947 kb on + strand, within CSW01_15880at 349.020 kb on + strand, within CSW01_15880at 349.040 kb on - strand, within CSW01_15880at 349.054 kb on - strand, within CSW01_15880at 349.099 kb on + strandat 349.099 kb on + strandat 349.099 kb on + strandat 349.107 kb on - strandat 349.154 kb on + strandat 349.157 kb on + strandat 349.166 kb on - strandat 349.168 kb on + strandat 349.168 kb on + strandat 349.168 kb on + strandat 349.168 kb on + strandat 349.168 kb on + strandat 349.168 kb on + strandat 349.168 kb on + strandat 349.168 kb on + strandat 349.168 kb on + strandat 349.176 kb on - strand, within CSW01_15885at 349.176 kb on - strand, within CSW01_15885at 349.176 kb on - strand, within CSW01_15885at 349.176 kb on - strand, within CSW01_15885at 349.176 kb on - strand, within CSW01_15885at 349.176 kb on - strand, within CSW01_15885at 349.176 kb on - strand, within CSW01_15885at 349.176 kb on - strand, within CSW01_15885at 349.227 kb on + strand, within CSW01_15885at 349.239 kb on + strand, within CSW01_15885at 349.239 kb on + strand, within CSW01_15885at 349.239 kb on + strand, within CSW01_15885at 349.246 kb on + strand, within CSW01_15885at 349.247 kb on - strand, within CSW01_15885at 349.269 kb on - strandat 349.269 kb on - strandat 349.269 kb on - strandat 349.269 kb on - strandat 349.269 kb on - strandat 349.269 kb on - strandat 349.269 kb on - strandat 349.269 kb on - strandat 349.269 kb on - strandat 349.271 kb on - strandat 349.271 kb on - strandat 349.271 kb on - strandat 349.492 kb on - strandat 349.643 kb on - strandat 349.643 kb on - strandat 349.728 kb on - strandat 349.728 kb on - strandat 349.786 kb on - strand, within CSW01_15895at 349.826 kb on - strand, within CSW01_15895at 349.835 kb on + strand, within CSW01_15895at 349.980 kb on + strand, within CSW01_15895at 349.986 kb on + strand, within CSW01_15895at 349.994 kb on - strand, within CSW01_15895at 350.053 kb on + strand, within CSW01_15895at 350.053 kb on + strand, within CSW01_15895at 350.068 kb on - strand, within CSW01_15895at 350.073 kb on + strand, within CSW01_15895at 350.198 kb on - strand, within CSW01_15895at 350.220 kb on + strand, within CSW01_15895at 350.302 kb on + strand, within CSW01_15895at 350.312 kb on + strandat 350.382 kb on + strandat 350.382 kb on + strandat 350.390 kb on - strandat 350.404 kb on - strandat 350.434 kb on + strandat 350.442 kb on - strandat 350.473 kb on + strandat 350.512 kb on + strandat 350.652 kb on + strand, within CSW01_15900at 350.732 kb on - strand, within CSW01_15900at 350.737 kb on + strand, within CSW01_15900at 350.737 kb on + strand, within CSW01_15900at 350.737 kb on + strand, within CSW01_15900at 350.745 kb on + strand, within CSW01_15900at 350.812 kb on - strand, within CSW01_15900at 350.814 kb on + strand, within CSW01_15900at 350.814 kb on + strand, within CSW01_15900at 350.822 kb on - strand, within CSW01_15900at 350.831 kb on + strandat 350.844 kb on - strandat 350.889 kb on - strand, within CSW01_15905at 351.089 kb on - strand, within CSW01_15910at 351.123 kb on - strand, within CSW01_15910at 351.133 kb on - strand, within CSW01_15910at 351.135 kb on - strand, within CSW01_15910at 351.273 kb on + strand, within CSW01_15910at 351.278 kb on + strand, within CSW01_15910at 351.333 kb on + strand, within CSW01_15910at 351.333 kb on - strand, within CSW01_15910

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_60MIN_ZN4B
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348,738 + CSW01_15880 0.28 -0.1
348,738 + CSW01_15880 0.28 +1.3
348,738 + CSW01_15880 0.28 -0.5
348,738 + CSW01_15880 0.28 -0.9
348,738 + CSW01_15880 0.28 +0.3
348,738 + CSW01_15880 0.28 -0.2
348,746 - CSW01_15880 0.29 -0.5
348,746 - CSW01_15880 0.29 -0.9
348,746 - CSW01_15880 0.29 +0.3
348,746 - CSW01_15880 0.29 -0.0
348,746 - CSW01_15880 0.29 -1.0
348,746 - CSW01_15880 0.29 -0.7
348,746 - CSW01_15880 0.29 -0.6
348,746 - CSW01_15880 0.29 -0.4
348,771 + CSW01_15880 0.34 +0.1
348,816 - CSW01_15880 0.41 -2.0
348,835 - CSW01_15880 0.45 -0.3
348,835 - CSW01_15880 0.45 -0.7
348,898 + CSW01_15880 0.56 -0.4
348,915 + CSW01_15880 0.59 -0.4
348,921 - CSW01_15880 0.60 +0.0
348,942 + CSW01_15880 0.63 -0.1
348,947 + CSW01_15880 0.64 -0.8
349,020 + CSW01_15880 0.77 -0.0
349,040 - CSW01_15880 0.80 +0.1
349,054 - CSW01_15880 0.83 +0.2
349,099 + -0.1
349,099 + -0.1
349,099 + +0.8
349,107 - -0.3
349,154 + -0.7
349,157 + +0.2
349,166 - -0.2
349,168 + -0.6
349,168 + -0.7
349,168 + +0.0
349,168 + +1.2
349,168 + -2.7
349,168 + -2.1
349,168 + +0.3
349,168 + +0.3
349,168 + -0.2
349,176 - CSW01_15885 0.16 +0.1
349,176 - CSW01_15885 0.16 +0.7
349,176 - CSW01_15885 0.16 -0.4
349,176 - CSW01_15885 0.16 -0.0
349,176 - CSW01_15885 0.16 -0.7
349,176 - CSW01_15885 0.16 +0.5
349,176 - CSW01_15885 0.16 -1.0
349,176 - CSW01_15885 0.16 +1.2
349,227 + CSW01_15885 0.62 -0.8
349,239 + CSW01_15885 0.73 -0.2
349,239 + CSW01_15885 0.73 -1.1
349,239 + CSW01_15885 0.73 -1.3
349,246 + CSW01_15885 0.79 -0.5
349,247 - CSW01_15885 0.80 -0.2
349,269 - -0.8
349,269 - -0.5
349,269 - -0.1
349,269 - +0.5
349,269 - -0.8
349,269 - +0.9
349,269 - -2.7
349,269 - +0.3
349,269 - -0.3
349,271 - +0.9
349,271 - -0.9
349,271 - +0.0
349,492 - +0.3
349,643 - +0.2
349,643 - +0.3
349,728 - +0.4
349,728 - -0.5
349,786 - CSW01_15895 0.14 -0.6
349,826 - CSW01_15895 0.20 -0.8
349,835 + CSW01_15895 0.21 -0.3
349,980 + CSW01_15895 0.42 -1.3
349,986 + CSW01_15895 0.43 -0.8
349,994 - CSW01_15895 0.44 -0.5
350,053 + CSW01_15895 0.53 -0.8
350,053 + CSW01_15895 0.53 -1.0
350,068 - CSW01_15895 0.55 +0.1
350,073 + CSW01_15895 0.56 -0.6
350,198 - CSW01_15895 0.74 +0.2
350,220 + CSW01_15895 0.77 -0.6
350,302 + CSW01_15895 0.89 +0.4
350,312 + +0.5
350,382 + +2.7
350,382 + +1.4
350,390 - -1.5
350,404 - -0.3
350,434 + +0.2
350,442 - -2.0
350,473 + +1.2
350,512 + +1.6
350,652 + CSW01_15900 0.24 -0.5
350,732 - CSW01_15900 0.54 -0.1
350,737 + CSW01_15900 0.55 -0.4
350,737 + CSW01_15900 0.55 -0.4
350,737 + CSW01_15900 0.55 -0.3
350,745 + CSW01_15900 0.58 -0.5
350,812 - CSW01_15900 0.84 -0.1
350,814 + CSW01_15900 0.84 +0.0
350,814 + CSW01_15900 0.84 -0.6
350,822 - CSW01_15900 0.87 -0.5
350,831 + -0.5
350,844 - +0.2
350,889 - CSW01_15905 0.32 -0.7
351,089 - CSW01_15910 0.13 +1.1
351,123 - CSW01_15910 0.19 -0.1
351,133 - CSW01_15910 0.20 -0.3
351,135 - CSW01_15910 0.21 +0.1
351,273 + CSW01_15910 0.44 +0.6
351,278 + CSW01_15910 0.45 +1.5
351,333 + CSW01_15910 0.54 +0.2
351,333 - CSW01_15910 0.54 -0.0

Or see this region's nucleotide sequence