Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_15570

Experiment: LB_Anaerobic_60MIN_ZN4B

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_15555 and CSW01_15560 are separated by 136 nucleotidesCSW01_15560 and CSW01_15565 are separated by 0 nucleotidesCSW01_15565 and CSW01_15570 are separated by 62 nucleotidesCSW01_15570 and CSW01_15575 overlap by 4 nucleotidesCSW01_15575 and CSW01_15580 are separated by 69 nucleotidesCSW01_15580 and CSW01_15585 are separated by 218 nucleotidesCSW01_15585 and CSW01_15590 are separated by 96 nucleotides CSW01_15555: CSW01_15555 - N-acetyltransferase, at 322,732 to 323,268 _15555 CSW01_15560: CSW01_15560 - lipocalin, at 323,405 to 323,920 _15560 CSW01_15565: CSW01_15565 - hypothetical protein, at 323,921 to 324,007 _15565 CSW01_15570: CSW01_15570 - N-acetyltransferase, at 324,070 to 324,567 _15570 CSW01_15575: CSW01_15575 - DUF1778 domain-containing protein, at 324,564 to 324,836 _15575 CSW01_15580: CSW01_15580 - hypothetical protein, at 324,906 to 325,010 _15580 CSW01_15585: CSW01_15585 - DUF645 domain-containing protein, at 325,229 to 325,354 _15585 CSW01_15590: CSW01_15590 - hypothetical protein, at 325,451 to 325,546 _15590 Position (kb) 324 325Strain fitness (log2 ratio) -1 0 1at 323.632 kb on + strand, within CSW01_15560at 325.308 kb on + strand, within CSW01_15585at 325.316 kb on - strand, within CSW01_15585at 325.316 kb on - strand, within CSW01_15585at 325.316 kb on - strand, within CSW01_15585

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_60MIN_ZN4B
remove
323,632 + CSW01_15560 0.44 -0.7
325,308 + CSW01_15585 0.63 +0.8
325,316 - CSW01_15585 0.69 +0.3
325,316 - CSW01_15585 0.69 +0.1
325,316 - CSW01_15585 0.69 -1.1

Or see this region's nucleotide sequence