Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14925

Experiment: LB_Anaerobic_60MIN_ZN4B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14915 and CSW01_14920 are separated by 387 nucleotidesCSW01_14920 and CSW01_14925 are separated by 234 nucleotidesCSW01_14925 and CSW01_14930 are separated by 86 nucleotides CSW01_14915: CSW01_14915 - ribosome alternative rescue factor ArfA, at 204,012 to 204,239 _14915 CSW01_14920: CSW01_14920 - NADH:ubiquinone oxidoreductase, at 204,627 to 205,004 _14920 CSW01_14925: CSW01_14925 - hypothetical protein, at 205,239 to 205,517 _14925 CSW01_14930: CSW01_14930 - response regulator, at 205,604 to 206,608 _14930 Position (kb) 205 206Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 204.255 kb on + strandat 204.263 kb on - strandat 204.265 kb on + strandat 204.360 kb on - strandat 204.689 kb on - strand, within CSW01_14920at 204.794 kb on + strand, within CSW01_14920at 204.827 kb on - strand, within CSW01_14920at 205.038 kb on + strandat 205.038 kb on + strandat 205.038 kb on + strandat 205.038 kb on + strandat 205.046 kb on - strandat 205.048 kb on + strandat 205.116 kb on + strandat 205.186 kb on + strandat 205.194 kb on - strandat 205.194 kb on - strandat 205.194 kb on - strandat 205.194 kb on - strandat 205.194 kb on - strandat 205.202 kb on + strandat 205.202 kb on + strandat 205.203 kb on + strandat 205.234 kb on + strandat 205.300 kb on - strand, within CSW01_14925at 205.352 kb on - strand, within CSW01_14925at 205.383 kb on + strand, within CSW01_14925at 205.430 kb on + strand, within CSW01_14925at 205.436 kb on - strand, within CSW01_14925at 205.438 kb on - strand, within CSW01_14925at 205.438 kb on - strand, within CSW01_14925at 205.464 kb on - strand, within CSW01_14925at 205.491 kb on - strandat 205.544 kb on + strandat 205.606 kb on + strandat 205.606 kb on + strandat 205.616 kb on + strandat 205.624 kb on - strandat 205.683 kb on + strandat 205.686 kb on - strandat 205.688 kb on + strandat 205.736 kb on - strand, within CSW01_14930at 205.743 kb on + strand, within CSW01_14930at 205.751 kb on - strand, within CSW01_14930at 205.969 kb on - strand, within CSW01_14930at 206.058 kb on - strand, within CSW01_14930at 206.088 kb on + strand, within CSW01_14930at 206.105 kb on + strand, within CSW01_14930at 206.119 kb on - strand, within CSW01_14930at 206.130 kb on + strand, within CSW01_14930at 206.130 kb on + strand, within CSW01_14930at 206.130 kb on + strand, within CSW01_14930at 206.130 kb on + strand, within CSW01_14930at 206.130 kb on + strand, within CSW01_14930at 206.130 kb on + strand, within CSW01_14930at 206.130 kb on + strand, within CSW01_14930at 206.130 kb on + strand, within CSW01_14930at 206.130 kb on + strand, within CSW01_14930at 206.130 kb on + strand, within CSW01_14930at 206.138 kb on - strand, within CSW01_14930at 206.138 kb on - strand, within CSW01_14930at 206.138 kb on - strand, within CSW01_14930at 206.138 kb on - strand, within CSW01_14930at 206.138 kb on - strand, within CSW01_14930at 206.159 kb on - strand, within CSW01_14930at 206.193 kb on - strand, within CSW01_14930at 206.242 kb on - strand, within CSW01_14930at 206.253 kb on + strand, within CSW01_14930at 206.315 kb on + strand, within CSW01_14930at 206.324 kb on - strand, within CSW01_14930at 206.377 kb on - strand, within CSW01_14930at 206.378 kb on - strand, within CSW01_14930at 206.487 kb on + strand, within CSW01_14930at 206.487 kb on + strand, within CSW01_14930at 206.488 kb on - strand, within CSW01_14930at 206.495 kb on - strand, within CSW01_14930

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_60MIN_ZN4B
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204,255 + -0.1
204,263 - +0.2
204,265 + +0.0
204,360 - +0.4
204,689 - CSW01_14920 0.16 -0.6
204,794 + CSW01_14920 0.44 +1.3
204,827 - CSW01_14920 0.53 +1.3
205,038 + -1.3
205,038 + -0.2
205,038 + -2.0
205,038 + -0.2
205,046 - +0.6
205,048 + +0.6
205,116 + -0.4
205,186 + +0.1
205,194 - -0.7
205,194 - -0.5
205,194 - -0.0
205,194 - -0.3
205,194 - +1.2
205,202 + -0.8
205,202 + -0.3
205,203 + +0.6
205,234 + -0.3
205,300 - CSW01_14925 0.22 -0.5
205,352 - CSW01_14925 0.41 -1.1
205,383 + CSW01_14925 0.52 -0.7
205,430 + CSW01_14925 0.68 -0.5
205,436 - CSW01_14925 0.71 -0.4
205,438 - CSW01_14925 0.71 -2.0
205,438 - CSW01_14925 0.71 -0.2
205,464 - CSW01_14925 0.81 +0.8
205,491 - +0.3
205,544 + -0.0
205,606 + -1.2
205,606 + -1.3
205,616 + -2.9
205,624 - -0.2
205,683 + +2.1
205,686 - +1.2
205,688 + +0.9
205,736 - CSW01_14930 0.13 -0.1
205,743 + CSW01_14930 0.14 +0.5
205,751 - CSW01_14930 0.15 -0.7
205,969 - CSW01_14930 0.36 +0.3
206,058 - CSW01_14930 0.45 -0.3
206,088 + CSW01_14930 0.48 +0.2
206,105 + CSW01_14930 0.50 +0.5
206,119 - CSW01_14930 0.51 +0.3
206,130 + CSW01_14930 0.52 +0.7
206,130 + CSW01_14930 0.52 +0.2
206,130 + CSW01_14930 0.52 +0.1
206,130 + CSW01_14930 0.52 -1.2
206,130 + CSW01_14930 0.52 +0.2
206,130 + CSW01_14930 0.52 -0.6
206,130 + CSW01_14930 0.52 -0.5
206,130 + CSW01_14930 0.52 -0.8
206,130 + CSW01_14930 0.52 +0.9
206,130 + CSW01_14930 0.52 -0.5
206,138 - CSW01_14930 0.53 +0.2
206,138 - CSW01_14930 0.53 +0.8
206,138 - CSW01_14930 0.53 -0.3
206,138 - CSW01_14930 0.53 -0.1
206,138 - CSW01_14930 0.53 -1.3
206,159 - CSW01_14930 0.55 -0.1
206,193 - CSW01_14930 0.59 +1.1
206,242 - CSW01_14930 0.63 -0.6
206,253 + CSW01_14930 0.65 -0.9
206,315 + CSW01_14930 0.71 +0.0
206,324 - CSW01_14930 0.72 +0.2
206,377 - CSW01_14930 0.77 +0.7
206,378 - CSW01_14930 0.77 +0.3
206,487 + CSW01_14930 0.88 -1.9
206,487 + CSW01_14930 0.88 +0.4
206,488 - CSW01_14930 0.88 +0.3
206,495 - CSW01_14930 0.89 +0.6

Or see this region's nucleotide sequence