Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14895

Experiment: LB_Anaerobic_60MIN_ZN4B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14890 and CSW01_14895 are separated by 171 nucleotidesCSW01_14895 and CSW01_14900 overlap by 4 nucleotides CSW01_14890: CSW01_14890 - peptidase T, at 198,057 to 199,289 _14890 CSW01_14895: CSW01_14895 - mechanosensitive ion channel family protein, at 199,461 to 200,336 _14895 CSW01_14900: CSW01_14900 - regulatory protein LuxO, at 200,333 to 201,925 _14900 Position (kb) 199 200 201Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 198.467 kb on - strand, within CSW01_14890at 198.467 kb on - strand, within CSW01_14890at 198.680 kb on + strand, within CSW01_14890at 198.715 kb on + strand, within CSW01_14890at 198.752 kb on + strand, within CSW01_14890at 198.775 kb on - strand, within CSW01_14890at 198.845 kb on + strand, within CSW01_14890at 198.901 kb on + strand, within CSW01_14890at 198.901 kb on + strand, within CSW01_14890at 198.901 kb on + strand, within CSW01_14890at 198.924 kb on - strand, within CSW01_14890at 198.979 kb on - strand, within CSW01_14890at 198.979 kb on - strand, within CSW01_14890at 199.005 kb on - strand, within CSW01_14890at 199.007 kb on + strand, within CSW01_14890at 199.007 kb on + strand, within CSW01_14890at 199.012 kb on + strand, within CSW01_14890at 199.015 kb on - strand, within CSW01_14890at 199.038 kb on - strand, within CSW01_14890at 199.039 kb on - strand, within CSW01_14890at 199.144 kb on - strand, within CSW01_14890at 199.157 kb on - strand, within CSW01_14890at 199.195 kb on + strandat 199.200 kb on + strandat 199.203 kb on - strandat 199.236 kb on + strandat 199.239 kb on - strandat 199.244 kb on - strandat 199.244 kb on - strandat 199.356 kb on + strandat 199.408 kb on + strandat 199.430 kb on + strandat 199.435 kb on + strandat 199.435 kb on + strandat 199.459 kb on - strandat 199.498 kb on + strandat 199.506 kb on - strandat 199.506 kb on - strandat 199.506 kb on - strandat 199.735 kb on + strand, within CSW01_14895at 199.823 kb on - strand, within CSW01_14895at 199.853 kb on - strand, within CSW01_14895at 199.898 kb on + strand, within CSW01_14895at 199.942 kb on - strand, within CSW01_14895at 199.987 kb on - strand, within CSW01_14895at 200.136 kb on + strand, within CSW01_14895at 200.136 kb on + strand, within CSW01_14895at 200.136 kb on + strand, within CSW01_14895at 200.144 kb on - strand, within CSW01_14895at 200.146 kb on + strand, within CSW01_14895at 200.146 kb on + strand, within CSW01_14895at 200.146 kb on + strand, within CSW01_14895at 200.146 kb on + strand, within CSW01_14895at 200.146 kb on + strand, within CSW01_14895at 200.146 kb on + strand, within CSW01_14895at 200.146 kb on + strand, within CSW01_14895at 200.146 kb on + strand, within CSW01_14895at 200.146 kb on + strand, within CSW01_14895at 200.146 kb on + strand, within CSW01_14895at 200.146 kb on + strand, within CSW01_14895at 200.154 kb on - strand, within CSW01_14895at 200.154 kb on - strand, within CSW01_14895at 200.154 kb on - strand, within CSW01_14895at 200.154 kb on - strand, within CSW01_14895at 200.244 kb on - strand, within CSW01_14895at 200.368 kb on + strandat 200.368 kb on + strandat 200.376 kb on - strandat 200.376 kb on - strandat 200.557 kb on - strand, within CSW01_14900at 200.578 kb on + strand, within CSW01_14900at 200.578 kb on + strand, within CSW01_14900at 200.734 kb on - strand, within CSW01_14900at 200.754 kb on - strand, within CSW01_14900at 200.833 kb on + strand, within CSW01_14900at 200.865 kb on - strand, within CSW01_14900at 200.903 kb on - strand, within CSW01_14900at 200.990 kb on + strand, within CSW01_14900at 200.990 kb on + strand, within CSW01_14900at 200.990 kb on + strand, within CSW01_14900at 200.998 kb on - strand, within CSW01_14900at 201.089 kb on - strand, within CSW01_14900at 201.180 kb on + strand, within CSW01_14900at 201.185 kb on + strand, within CSW01_14900at 201.188 kb on - strand, within CSW01_14900at 201.188 kb on - strand, within CSW01_14900at 201.188 kb on - strand, within CSW01_14900at 201.193 kb on - strand, within CSW01_14900at 201.193 kb on - strand, within CSW01_14900at 201.217 kb on + strand, within CSW01_14900at 201.217 kb on + strand, within CSW01_14900at 201.217 kb on + strand, within CSW01_14900at 201.225 kb on - strand, within CSW01_14900at 201.263 kb on - strand, within CSW01_14900at 201.266 kb on + strand, within CSW01_14900

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_60MIN_ZN4B
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198,467 - CSW01_14890 0.33 +0.4
198,467 - CSW01_14890 0.33 +0.6
198,680 + CSW01_14890 0.51 +0.7
198,715 + CSW01_14890 0.53 +1.5
198,752 + CSW01_14890 0.56 -0.9
198,775 - CSW01_14890 0.58 +0.8
198,845 + CSW01_14890 0.64 -2.8
198,901 + CSW01_14890 0.68 +0.9
198,901 + CSW01_14890 0.68 -0.1
198,901 + CSW01_14890 0.68 -0.7
198,924 - CSW01_14890 0.70 +0.7
198,979 - CSW01_14890 0.75 -0.3
198,979 - CSW01_14890 0.75 -0.6
199,005 - CSW01_14890 0.77 +0.7
199,007 + CSW01_14890 0.77 -0.1
199,007 + CSW01_14890 0.77 +0.9
199,012 + CSW01_14890 0.77 -0.4
199,015 - CSW01_14890 0.78 +0.9
199,038 - CSW01_14890 0.80 -0.7
199,039 - CSW01_14890 0.80 +1.1
199,144 - CSW01_14890 0.88 +0.5
199,157 - CSW01_14890 0.89 -0.4
199,195 + -0.6
199,200 + -0.8
199,203 - +0.8
199,236 + +0.3
199,239 - +0.3
199,244 - +1.1
199,244 - -0.0
199,356 + +0.3
199,408 + +0.8
199,430 + +1.9
199,435 + -0.5
199,435 + -3.8
199,459 - +0.6
199,498 + -3.7
199,506 - +0.6
199,506 - +0.4
199,506 - -0.3
199,735 + CSW01_14895 0.31 -0.4
199,823 - CSW01_14895 0.41 +1.0
199,853 - CSW01_14895 0.45 -3.3
199,898 + CSW01_14895 0.50 -0.3
199,942 - CSW01_14895 0.55 -0.6
199,987 - CSW01_14895 0.60 +0.4
200,136 + CSW01_14895 0.77 -0.3
200,136 + CSW01_14895 0.77 -0.1
200,136 + CSW01_14895 0.77 -0.1
200,144 - CSW01_14895 0.78 -0.1
200,146 + CSW01_14895 0.78 -0.6
200,146 + CSW01_14895 0.78 -0.5
200,146 + CSW01_14895 0.78 +1.9
200,146 + CSW01_14895 0.78 -0.7
200,146 + CSW01_14895 0.78 -0.3
200,146 + CSW01_14895 0.78 +1.0
200,146 + CSW01_14895 0.78 -0.7
200,146 + CSW01_14895 0.78 +0.0
200,146 + CSW01_14895 0.78 -2.0
200,146 + CSW01_14895 0.78 +0.9
200,146 + CSW01_14895 0.78 +0.3
200,154 - CSW01_14895 0.79 -0.0
200,154 - CSW01_14895 0.79 -0.5
200,154 - CSW01_14895 0.79 +0.0
200,154 - CSW01_14895 0.79 -0.3
200,244 - CSW01_14895 0.89 -2.4
200,368 + -1.8
200,368 + +0.1
200,376 - -0.4
200,376 - -0.3
200,557 - CSW01_14900 0.14 +0.2
200,578 + CSW01_14900 0.15 -1.0
200,578 + CSW01_14900 0.15 -0.3
200,734 - CSW01_14900 0.25 +2.0
200,754 - CSW01_14900 0.26 +1.2
200,833 + CSW01_14900 0.31 +3.4
200,865 - CSW01_14900 0.33 +0.4
200,903 - CSW01_14900 0.36 -0.3
200,990 + CSW01_14900 0.41 +0.1
200,990 + CSW01_14900 0.41 -2.2
200,990 + CSW01_14900 0.41 -1.5
200,998 - CSW01_14900 0.42 -0.8
201,089 - CSW01_14900 0.47 -0.0
201,180 + CSW01_14900 0.53 -1.2
201,185 + CSW01_14900 0.53 -0.1
201,188 - CSW01_14900 0.54 -1.6
201,188 - CSW01_14900 0.54 -0.9
201,188 - CSW01_14900 0.54 +0.1
201,193 - CSW01_14900 0.54 -0.3
201,193 - CSW01_14900 0.54 +1.1
201,217 + CSW01_14900 0.55 +0.6
201,217 + CSW01_14900 0.55 -0.5
201,217 + CSW01_14900 0.55 -0.2
201,225 - CSW01_14900 0.56 -0.4
201,263 - CSW01_14900 0.58 +0.1
201,266 + CSW01_14900 0.59 -0.4

Or see this region's nucleotide sequence