Experiment: LB_Anaerobic_60MIN_ZN4B
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_14825 and CSW01_14830 are separated by 245 nucleotides CSW01_14830 and CSW01_14835 are separated by 289 nucleotides CSW01_14835 and CSW01_14840 are separated by 160 nucleotides
CSW01_14825: CSW01_14825 - GGDEF domain-containing protein, at 181,876 to 184,008
_14825
CSW01_14830: CSW01_14830 - cold-shock protein CspA, at 184,254 to 184,466
_14830
CSW01_14835: CSW01_14835 - SIMPL domain-containing protein, at 184,756 to 185,472
_14835
CSW01_14840: CSW01_14840 - aerotolerance protein BatD, at 185,633 to 187,285
_14840
Position (kb) 184
185
186 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 183.803 kb on + strand at 183.811 kb on - strand at 183.811 kb on - strand at 183.811 kb on - strand at 183.811 kb on - strand at 183.835 kb on + strand at 183.900 kb on + strand at 183.900 kb on + strand at 183.908 kb on - strand at 183.908 kb on - strand at 183.908 kb on - strand at 183.908 kb on - strand at 183.922 kb on + strand at 183.922 kb on + strand at 183.922 kb on + strand at 183.922 kb on + strand at 183.922 kb on + strand at 183.922 kb on + strand at 183.922 kb on + strand at 183.922 kb on + strand at 183.922 kb on + strand at 183.922 kb on + strand at 183.922 kb on + strand at 183.930 kb on - strand at 183.930 kb on - strand at 183.930 kb on - strand at 183.930 kb on - strand at 183.930 kb on - strand at 183.930 kb on - strand at 183.930 kb on - strand at 183.957 kb on + strand at 184.446 kb on + strand at 184.642 kb on + strand at 184.655 kb on - strand at 184.727 kb on + strand at 184.781 kb on - strand at 184.958 kb on + strand, within CSW01_14835 at 185.297 kb on + strand, within CSW01_14835 at 185.300 kb on - strand, within CSW01_14835 at 185.435 kb on - strand at 185.475 kb on - strand at 185.524 kb on - strand at 185.524 kb on - strand at 185.524 kb on - strand at 185.739 kb on - strand at 185.831 kb on + strand, within CSW01_14840 at 185.913 kb on - strand, within CSW01_14840 at 185.994 kb on + strand, within CSW01_14840 at 185.994 kb on + strand, within CSW01_14840 at 185.996 kb on - strand, within CSW01_14840 at 186.002 kb on - strand, within CSW01_14840 at 186.066 kb on + strand, within CSW01_14840 at 186.074 kb on - strand, within CSW01_14840 at 186.074 kb on - strand, within CSW01_14840 at 186.094 kb on - strand, within CSW01_14840 at 186.094 kb on - strand, within CSW01_14840 at 186.146 kb on + strand, within CSW01_14840 at 186.196 kb on - strand, within CSW01_14840 at 186.218 kb on - strand, within CSW01_14840 at 186.224 kb on + strand, within CSW01_14840 at 186.258 kb on + strand, within CSW01_14840 at 186.258 kb on + strand, within CSW01_14840 at 186.258 kb on + strand, within CSW01_14840 at 186.459 kb on + strand, within CSW01_14840
Per-strain Table
Position Strand Gene LocusTag Fraction LB_Anaerobic_60MIN_ZN4B remove 183,803 + +0.5 183,811 - -0.2 183,811 - +0.2 183,811 - -0.6 183,811 - +0.4 183,835 + -2.2 183,900 + -1.4 183,900 + +2.2 183,908 - +2.2 183,908 - +0.7 183,908 - +0.1 183,908 - +0.6 183,922 + +0.8 183,922 + -0.1 183,922 + -0.6 183,922 + -0.5 183,922 + -0.0 183,922 + +1.2 183,922 + -0.3 183,922 + +2.2 183,922 + -0.7 183,922 + -1.5 183,922 + +0.0 183,930 - -1.8 183,930 - -3.7 183,930 - +0.6 183,930 - +0.9 183,930 - -0.5 183,930 - +0.0 183,930 - -0.0 183,957 + -2.5 184,446 + -1.3 184,642 + +0.7 184,655 - -0.5 184,727 + -0.3 184,781 - -0.6 184,958 + CSW01_14835 0.28 +0.4 185,297 + CSW01_14835 0.75 +0.0 185,300 - CSW01_14835 0.76 -0.1 185,435 - +0.3 185,475 - -2.0 185,524 - -0.6 185,524 - -0.9 185,524 - +0.0 185,739 - -0.4 185,831 + CSW01_14840 0.12 +0.3 185,913 - CSW01_14840 0.17 -0.4 185,994 + CSW01_14840 0.22 -0.3 185,994 + CSW01_14840 0.22 +1.4 185,996 - CSW01_14840 0.22 -0.3 186,002 - CSW01_14840 0.22 -0.1 186,066 + CSW01_14840 0.26 -0.3 186,074 - CSW01_14840 0.27 +0.6 186,074 - CSW01_14840 0.27 +0.6 186,094 - CSW01_14840 0.28 -1.0 186,094 - CSW01_14840 0.28 +0.8 186,146 + CSW01_14840 0.31 +0.7 186,196 - CSW01_14840 0.34 -0.6 186,218 - CSW01_14840 0.35 +0.3 186,224 + CSW01_14840 0.36 +1.7 186,258 + CSW01_14840 0.38 -0.3 186,258 + CSW01_14840 0.38 -1.0 186,258 + CSW01_14840 0.38 -0.1 186,459 + CSW01_14840 0.50 +0.9
Or see this region's nucleotide sequence