Experiment: LB_Anaerobic_60MIN_ZN4B
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_14465 and CSW01_14470 are separated by 229 nucleotides CSW01_14470 and CSW01_14475 are separated by 170 nucleotides
CSW01_14465: CSW01_14465 - EamA/RhaT family transporter, at 99,074 to 99,967
_14465
CSW01_14470: CSW01_14470 - DUF134 domain-containing protein, at 100,197 to 100,493
_14470
CSW01_14475: CSW01_14475 - cobinamide adenolsyltransferase, at 100,664 to 101,293
_14475
Position (kb) 100
101 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 99.215 kb on - strand, within CSW01_14465 at 99.272 kb on - strand, within CSW01_14465 at 99.299 kb on + strand, within CSW01_14465 at 99.309 kb on + strand, within CSW01_14465 at 99.391 kb on - strand, within CSW01_14465 at 99.446 kb on + strand, within CSW01_14465 at 99.446 kb on + strand, within CSW01_14465 at 99.454 kb on - strand, within CSW01_14465 at 99.454 kb on - strand, within CSW01_14465 at 99.456 kb on - strand, within CSW01_14465 at 99.528 kb on + strand, within CSW01_14465 at 99.528 kb on + strand, within CSW01_14465 at 99.530 kb on + strand, within CSW01_14465 at 99.554 kb on - strand, within CSW01_14465 at 99.627 kb on - strand, within CSW01_14465 at 99.669 kb on + strand, within CSW01_14465 at 99.697 kb on + strand, within CSW01_14465 at 99.796 kb on + strand, within CSW01_14465 at 99.814 kb on - strand, within CSW01_14465 at 99.819 kb on + strand, within CSW01_14465 at 99.882 kb on - strand at 99.907 kb on + strand at 99.928 kb on + strand at 99.959 kb on - strand at 100.112 kb on - strand at 100.117 kb on - strand at 100.256 kb on + strand, within CSW01_14470 at 100.274 kb on - strand, within CSW01_14470 at 100.278 kb on + strand, within CSW01_14470 at 100.322 kb on + strand, within CSW01_14470 at 100.383 kb on + strand, within CSW01_14470 at 100.383 kb on + strand, within CSW01_14470 at 100.417 kb on + strand, within CSW01_14470 at 100.425 kb on - strand, within CSW01_14470 at 100.509 kb on + strand at 100.538 kb on - strand at 100.742 kb on + strand, within CSW01_14475 at 100.745 kb on - strand, within CSW01_14475 at 100.942 kb on - strand, within CSW01_14475 at 100.952 kb on + strand, within CSW01_14475 at 100.993 kb on + strand, within CSW01_14475 at 101.048 kb on + strand, within CSW01_14475 at 101.052 kb on - strand, within CSW01_14475 at 101.057 kb on - strand, within CSW01_14475 at 101.092 kb on - strand, within CSW01_14475 at 101.124 kb on - strand, within CSW01_14475 at 101.263 kb on + strand at 101.286 kb on + strand at 101.286 kb on + strand at 101.286 kb on - strand at 101.315 kb on + strand at 101.315 kb on + strand at 101.358 kb on + strand at 101.396 kb on + strand at 101.417 kb on - strand at 101.417 kb on - strand at 101.422 kb on - strand at 101.445 kb on - strand at 101.469 kb on + strand at 101.469 kb on - strand at 101.472 kb on - strand at 101.478 kb on - strand at 101.491 kb on - strand at 101.491 kb on - strand at 101.492 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB_Anaerobic_60MIN_ZN4B remove 99,215 - CSW01_14465 0.16 +0.6 99,272 - CSW01_14465 0.22 -0.3 99,299 + CSW01_14465 0.25 +0.3 99,309 + CSW01_14465 0.26 +1.2 99,391 - CSW01_14465 0.35 -1.8 99,446 + CSW01_14465 0.42 +0.3 99,446 + CSW01_14465 0.42 -1.6 99,454 - CSW01_14465 0.43 -1.1 99,454 - CSW01_14465 0.43 -0.6 99,456 - CSW01_14465 0.43 +0.4 99,528 + CSW01_14465 0.51 +0.8 99,528 + CSW01_14465 0.51 -1.5 99,530 + CSW01_14465 0.51 +0.8 99,554 - CSW01_14465 0.54 -1.1 99,627 - CSW01_14465 0.62 -0.5 99,669 + CSW01_14465 0.67 -0.4 99,697 + CSW01_14465 0.70 -0.3 99,796 + CSW01_14465 0.81 -0.8 99,814 - CSW01_14465 0.83 +0.2 99,819 + CSW01_14465 0.83 +0.0 99,882 - -1.5 99,907 + +0.5 99,928 + -0.6 99,959 - -0.4 100,112 - -1.1 100,117 - +0.4 100,256 + CSW01_14470 0.20 -0.1 100,274 - CSW01_14470 0.26 -0.3 100,278 + CSW01_14470 0.27 +0.5 100,322 + CSW01_14470 0.42 -1.2 100,383 + CSW01_14470 0.63 -0.7 100,383 + CSW01_14470 0.63 -3.5 100,417 + CSW01_14470 0.74 -1.0 100,425 - CSW01_14470 0.77 +0.3 100,509 + -0.5 100,538 - -0.4 100,742 + CSW01_14475 0.12 +1.3 100,745 - CSW01_14475 0.13 -2.3 100,942 - CSW01_14475 0.44 -0.1 100,952 + CSW01_14475 0.46 +0.9 100,993 + CSW01_14475 0.52 -0.0 101,048 + CSW01_14475 0.61 +0.0 101,052 - CSW01_14475 0.62 +2.3 101,057 - CSW01_14475 0.62 +0.2 101,092 - CSW01_14475 0.68 -3.4 101,124 - CSW01_14475 0.73 +0.2 101,263 + +0.1 101,286 + +0.6 101,286 + -1.1 101,286 - +0.4 101,315 + -2.0 101,315 + +0.6 101,358 + +0.6 101,396 + -0.5 101,417 - -0.1 101,417 - -0.2 101,422 - -0.2 101,445 - -0.3 101,469 + -1.3 101,469 - -0.4 101,472 - -0.6 101,478 - -0.8 101,491 - -0.5 101,491 - -3.3 101,492 - +0.4
Or see this region's nucleotide sequence