Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_13350

Experiment: LB_Anaerobic_60MIN_ZN4B

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB_Anaerobic_60MIN_ZN4B
2,840,602	-				+0.9
2,840,699	-				-0.1
2,840,804	-		CSW01_13345	0.10	+0.2
2,840,831	+		CSW01_13345	0.14	+0.2
2,840,838	+		CSW01_13345	0.15	-2.0
2,840,904	-		CSW01_13345	0.24	-2.0
2,841,015	+		CSW01_13345	0.39	+0.9
2,841,121	+		CSW01_13345	0.53	+0.1
2,841,131	+		CSW01_13345	0.54	-0.1
2,841,131	+		CSW01_13345	0.54	-0.2
2,841,134	-		CSW01_13345	0.55	-0.6
2,841,139	-		CSW01_13345	0.55	+0.3
2,841,139	-		CSW01_13345	0.55	-0.0
2,841,188	+		CSW01_13345	0.62	+0.7
2,841,239	-		CSW01_13345	0.69	-0.4
2,841,243	+		CSW01_13345	0.69	-3.0
2,841,251	-		CSW01_13345	0.70	-0.2
2,841,251	-		CSW01_13345	0.70	+0.0
2,841,272	+		CSW01_13345	0.73	-0.4
2,841,278	-		CSW01_13345	0.74	+0.7
2,841,306	+		CSW01_13345	0.78	+0.9
2,841,311	+		CSW01_13345	0.78	-1.7
2,841,319	-		CSW01_13345	0.80	+0.2
2,841,321	+		CSW01_13345	0.80	+2.1
2,841,329	-		CSW01_13345	0.81	+2.1
2,841,364	+		CSW01_13345	0.86	+2.5
2,841,381	+		CSW01_13345	0.88	+0.7
2,841,389	-		CSW01_13345	0.89	+0.2
2,841,420	+				+0.9
2,841,426	-				+0.0
2,841,428	-				-0.4
2,841,445	+				+0.3
2,841,445	+				-0.3
2,841,445	+				-0.0
2,841,453	-				-3.0
2,841,465	-				-1.2
2,841,465	-				-0.8
2,841,493	+				+0.1
2,841,493	+				-0.8
2,841,501	-				+0.8
2,841,501	-				-0.1
2,841,501	-				+0.3
2,841,564	-				+0.3
2,841,585	+				-0.4
2,841,587	+				-0.1
2,841,592	-				-0.4
2,841,624	-				-0.2
2,841,677	-				-1.0
2,841,681	+				-0.0
2,841,684	-				-1.8
2,841,689	-		CSW01_13350	0.10	+0.2
2,841,698	-		CSW01_13350	0.11	+0.9
2,841,698	-		CSW01_13350	0.11	+1.4
2,841,728	-		CSW01_13350	0.13	+0.1
2,841,728	-		CSW01_13350	0.13	-0.9
2,841,747	+		CSW01_13350	0.14	+0.6
2,841,747	+		CSW01_13350	0.14	-0.7
2,841,747	+		CSW01_13350	0.14	+0.3
2,841,747	+		CSW01_13350	0.14	-0.8
2,841,755	-		CSW01_13350	0.15	+0.1
2,841,755	-		CSW01_13350	0.15	-0.3
2,841,755	-		CSW01_13350	0.15	+0.6
2,841,755	-		CSW01_13350	0.15	-0.2
2,841,877	+		CSW01_13350	0.23	+0.0
2,841,879	-		CSW01_13350	0.23	+0.6
2,841,885	-		CSW01_13350	0.24	-0.2
2,841,941	-		CSW01_13350	0.27	+0.2
2,841,959	-		CSW01_13350	0.29	-0.1
2,841,980	+		CSW01_13350	0.30	+0.9
2,842,082	+		CSW01_13350	0.37	+0.8
2,842,092	+		CSW01_13350	0.38	-1.1
2,842,092	+		CSW01_13350	0.38	+1.7
2,842,092	+		CSW01_13350	0.38	-0.2
2,842,092	+		CSW01_13350	0.38	+0.3
2,842,092	+		CSW01_13350	0.38	+0.6
2,842,092	+		CSW01_13350	0.38	+0.3
2,842,092	+		CSW01_13350	0.38	+0.3
2,842,092	+		CSW01_13350	0.38	-1.6
2,842,092	+		CSW01_13350	0.38	+0.2
2,842,092	+		CSW01_13350	0.38	-0.7
2,842,092	+		CSW01_13350	0.38	-0.2
2,842,092	+		CSW01_13350	0.38	-0.6
2,842,092	+		CSW01_13350	0.38	+0.3
2,842,092	+		CSW01_13350	0.38	+0.9
2,842,092	+		CSW01_13350	0.38	+0.3
2,842,092	+		CSW01_13350	0.38	-0.7
2,842,092	+		CSW01_13350	0.38	+2.3
2,842,092	+		CSW01_13350	0.38	-0.4
2,842,092	+		CSW01_13350	0.38	+0.1
2,842,092	+		CSW01_13350	0.38	+0.7
2,842,092	+		CSW01_13350	0.38	-0.4
2,842,092	+		CSW01_13350	0.38	-1.0
2,842,100	-		CSW01_13350	0.38	-0.1
2,842,100	-		CSW01_13350	0.38	-0.8
2,842,100	-		CSW01_13350	0.38	+2.9
2,842,100	-		CSW01_13350	0.38	+0.2
2,842,100	-		CSW01_13350	0.38	-0.5
2,842,100	-		CSW01_13350	0.38	+0.7
2,842,100	-		CSW01_13350	0.38	+0.6
2,842,100	-		CSW01_13350	0.38	-0.4
2,842,100	-		CSW01_13350	0.38	-1.7
2,842,100	-		CSW01_13350	0.38	+0.9
2,842,100	-		CSW01_13350	0.38	-1.3
2,842,100	-		CSW01_13350	0.38	-0.3
2,842,100	-		CSW01_13350	0.38	-0.9
2,842,100	-		CSW01_13350	0.38	-2.5
2,842,100	-		CSW01_13350	0.38	-0.4
2,842,100	-		CSW01_13350	0.38	-0.2
2,842,139	+		CSW01_13350	0.41	-0.5
2,842,147	-		CSW01_13350	0.42	+0.3
2,842,159	+		CSW01_13350	0.42	-2.2
2,842,167	-		CSW01_13350	0.43	+1.1
2,842,219	+		CSW01_13350	0.47	+0.9
2,842,245	-		CSW01_13350	0.48	-0.4
2,842,245	-		CSW01_13350	0.48	+0.8
2,842,329	+		CSW01_13350	0.54	+1.0
2,842,376	+		CSW01_13350	0.57	-0.7
2,842,381	+		CSW01_13350	0.58	-0.1
2,842,384	-		CSW01_13350	0.58	-0.2
2,842,385	-		CSW01_13350	0.58	+0.2
2,842,389	-		CSW01_13350	0.58	-0.9
2,842,400	-		CSW01_13350	0.59	+0.2
2,842,417	+		CSW01_13350	0.60	+1.0
2,842,425	-		CSW01_13350	0.61	+0.1
2,842,425	-		CSW01_13350	0.61	+0.1
2,842,425	-		CSW01_13350	0.61	+0.1
2,842,425	-		CSW01_13350	0.61	-0.6
2,842,429	+		CSW01_13350	0.61	-0.3
2,842,447	-		CSW01_13350	0.62	-0.1
2,842,454	-		CSW01_13350	0.63	-0.4
2,842,480	-		CSW01_13350	0.64	+0.6
2,842,485	+		CSW01_13350	0.65	-0.1
2,842,514	+		CSW01_13350	0.67	+0.9
2,842,522	-		CSW01_13350	0.67	-0.1
2,842,522	-		CSW01_13350	0.67	+1.6
2,842,522	-		CSW01_13350	0.67	-0.3
2,842,542	-		CSW01_13350	0.69	-0.2
2,842,568	+		CSW01_13350	0.71	-1.6
2,842,568	+		CSW01_13350	0.71	-0.2
2,842,568	+		CSW01_13350	0.71	-0.6
2,842,568	+		CSW01_13350	0.71	-0.0
2,842,568	+		CSW01_13350	0.71	-0.4
2,842,568	+		CSW01_13350	0.71	-0.1
2,842,568	+		CSW01_13350	0.71	+0.4
2,842,568	+		CSW01_13350	0.71	-0.5
2,842,568	+		CSW01_13350	0.71	-2.8
2,842,568	+		CSW01_13350	0.71	-0.6
2,842,568	+		CSW01_13350	0.71	+1.7
2,842,568	+		CSW01_13350	0.71	-0.0
2,842,568	+		CSW01_13350	0.71	-0.1
2,842,568	+		CSW01_13350	0.71	-0.0
2,842,568	+		CSW01_13350	0.71	-0.4
2,842,576	-		CSW01_13350	0.71	+1.9
2,842,576	-		CSW01_13350	0.71	+0.4
2,842,576	-		CSW01_13350	0.71	+1.2
2,842,576	-		CSW01_13350	0.71	+1.9
2,842,576	-		CSW01_13350	0.71	+0.0
2,842,576	-		CSW01_13350	0.71	+0.5
2,842,576	-		CSW01_13350	0.71	+0.5
2,842,576	-		CSW01_13350	0.71	+0.2
2,842,576	-		CSW01_13350	0.71	+0.3
2,842,576	-		CSW01_13350	0.71	+1.5
2,842,576	-		CSW01_13350	0.71	+0.8
2,842,576	-		CSW01_13350	0.71	-0.3
2,842,576	-		CSW01_13350	0.71	+0.2
2,842,576	-		CSW01_13350	0.71	-2.7
2,842,632	+		CSW01_13350	0.75	-0.0
2,842,632	+		CSW01_13350	0.75	+1.2
2,842,632	+		CSW01_13350	0.75	-0.3
2,842,632	+		CSW01_13350	0.75	+1.2
2,842,632	+		CSW01_13350	0.75	+0.3
2,842,651	+		CSW01_13350	0.76	-0.1
2,842,671	+		CSW01_13350	0.78	-0.5
2,842,679	-		CSW01_13350	0.78	+0.7
2,842,729	+		CSW01_13350	0.82	+0.3
2,842,737	-		CSW01_13350	0.82	+1.8
2,842,748	-		CSW01_13350	0.83	+0.6
2,842,765	-		CSW01_13350	0.84	-0.0
2,842,772	-		CSW01_13350	0.85	+0.2
2,842,772	-		CSW01_13350	0.85	-0.2
2,842,806	-		CSW01_13350	0.87	+0.6
2,842,806	-		CSW01_13350	0.87	+0.3
2,842,836	-		CSW01_13350	0.89	+0.1
2,842,836	-		CSW01_13350	0.89	+1.0
2,842,857	-				+0.3
2,842,904	+				+1.2
2,842,906	+				-0.4
2,842,911	+				+0.8
2,842,911	+				+0.2
2,842,912	-				+0.9
2,842,916	+				+0.8
2,842,919	-				+0.5
2,842,919	-				-0.3
2,842,919	-				+1.7
2,842,919	-				-0.1
2,842,919	-				-0.1
2,842,919	-				-0.6
2,842,919	-				-1.2
2,842,919	-				-2.7
2,842,919	-				+1.2
2,842,919	-				-0.0
2,842,919	-				+0.8
2,842,924	-				+0.4
2,842,934	-				-1.4
2,842,960	+				+0.8
2,843,040	+				-0.5
2,843,047	+				-0.4
2,843,094	-				+0.6
2,843,109	+				-2.7
2,843,109	+				-4.0
2,843,109	+				-2.2
2,843,109	+				-0.8
2,843,109	+				-0.1
2,843,111	+				-0.7
2,843,111	+				-0.3
2,843,117	-				+0.8
2,843,117	-				-0.9
2,843,117	-				+0.2
2,843,117	-				+0.1
2,843,117	-				-0.0
2,843,117	-				+0.4
2,843,117	-				+0.3
2,843,117	-				-0.3
2,843,119	-				+0.4
2,843,119	-				+1.1
2,843,119	-				+0.2
2,843,129	-				-1.1
2,843,129	-				-1.4
2,843,151	+				-1.0
2,843,151	+				-1.7
2,843,151	+				+0.6
2,843,151	+				-0.1
2,843,153	+				-0.1
2,843,153	+				-1.7
2,843,153	+				+0.9
2,843,153	+				-0.0
2,843,153	+				-0.5
2,843,159	-				+0.1
2,843,159	-				+0.3
2,843,159	-				-1.9
2,843,159	-				-1.2
2,843,159	-				+0.1
2,843,159	-				-0.0
2,843,159	-				-0.2
2,843,161	-				-0.1
2,843,177	+				-0.2
2,843,253	-		CSW01_13355	0.12	-0.4
2,843,300	-		CSW01_13355	0.30	-0.2
2,843,300	-		CSW01_13355	0.30	-0.3
2,843,300	-		CSW01_13355	0.30	-0.3
2,843,309	+		CSW01_13355	0.33	+0.5
2,843,365	-		CSW01_13355	0.54	+1.2
2,843,411	+		CSW01_13355	0.72	+0.3
2,843,446	+		CSW01_13355	0.85	+1.5
2,843,587	+				+0.6
2,843,587	-				-0.7
2,843,595	-				+0.1
2,843,595	-				+0.3
2,843,595	-				-0.1
2,843,595	-				-0.2
2,843,614	-				-1.2
2,843,735	+				-2.5
2,843,751	+				+0.2
2,843,751	+				+0.6
2,843,759	-				-0.1
2,843,846	+				-0.7
2,843,869	+				+0.2
2,843,911	+		CSW01_13360	0.13	+0.1
2,843,911	+		CSW01_13360	0.13	+0.9
2,843,918	-		CSW01_13360	0.13	-1.0