Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_13315

Experiment: LB_Anaerobic_60MIN_ZN4B

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB_Anaerobic_60MIN_ZN4B
2,833,398	-		CSW01_13310	0.47	-0.2
2,833,408	+		CSW01_13310	0.47	-0.9
2,833,408	+		CSW01_13310	0.47	+0.9
2,833,501	-		CSW01_13310	0.52	-0.1
2,833,508	+		CSW01_13310	0.53	+0.3
2,833,516	-		CSW01_13310	0.53	-0.1
2,833,556	+		CSW01_13310	0.56	-0.1
2,833,570	-		CSW01_13310	0.56	+0.0
2,833,685	+		CSW01_13310	0.63	+0.9
2,833,685	+		CSW01_13310	0.63	-1.3
2,833,685	+		CSW01_13310	0.63	+0.2
2,833,693	-		CSW01_13310	0.64	-1.0
2,833,693	-		CSW01_13310	0.64	-0.3
2,833,761	-		CSW01_13310	0.67	-1.0
2,833,786	+		CSW01_13310	0.69	-0.1
2,833,857	+		CSW01_13310	0.73	-0.0
2,833,857	+		CSW01_13310	0.73	+0.8
2,833,857	+		CSW01_13310	0.73	+0.5
2,833,857	+		CSW01_13310	0.73	-0.3
2,833,857	+		CSW01_13310	0.73	+0.2
2,833,863	+		CSW01_13310	0.73	+0.2
2,833,863	+		CSW01_13310	0.73	+0.4
2,833,865	-		CSW01_13310	0.73	-0.5
2,833,865	-		CSW01_13310	0.73	+0.1
2,833,865	-		CSW01_13310	0.73	+0.2
2,833,865	-		CSW01_13310	0.73	+0.2
2,833,865	-		CSW01_13310	0.73	+0.2
2,833,871	-		CSW01_13310	0.74	-3.4
2,833,881	+		CSW01_13310	0.74	-0.3
2,833,881	+		CSW01_13310	0.74	+0.4
2,833,881	+		CSW01_13310	0.74	-0.4
2,833,881	+		CSW01_13310	0.74	-1.6
2,833,889	-		CSW01_13310	0.75	+0.4
2,833,903	+		CSW01_13310	0.76	+0.5
2,833,910	-		CSW01_13310	0.76	+1.0
2,833,911	-		CSW01_13310	0.76	+1.1
2,833,964	-		CSW01_13310	0.79	-0.4
2,833,971	+		CSW01_13310	0.80	-0.0
2,833,971	+		CSW01_13310	0.80	-0.0
2,833,974	-		CSW01_13310	0.80	-0.0
2,833,979	-		CSW01_13310	0.80	-0.2
2,834,000	-		CSW01_13310	0.81	-0.3
2,834,046	-		CSW01_13310	0.84	+1.3
2,834,064	+		CSW01_13310	0.85	-0.9
2,834,074	+		CSW01_13310	0.85	+0.0
2,834,074	+		CSW01_13310	0.85	-2.4
2,834,081	+		CSW01_13310	0.86	-0.2
2,834,081	+		CSW01_13310	0.86	+1.0
2,834,081	+		CSW01_13310	0.86	-0.2
2,834,081	+		CSW01_13310	0.86	-0.4
2,834,082	-		CSW01_13310	0.86	-0.4
2,834,082	-		CSW01_13310	0.86	-0.4
2,834,087	-		CSW01_13310	0.86	+0.2
2,834,089	-		CSW01_13310	0.86	+2.7
2,834,090	+		CSW01_13310	0.86	-0.0
2,834,124	+		CSW01_13310	0.88	+0.9
2,834,214	+				-0.5
2,834,242	+				+2.0
2,834,250	-				-0.7
2,834,265	+				-0.1
2,834,350	+				-0.1
2,834,360	+				-0.1
2,834,459	-		CSW01_13315	0.25	+1.2
2,834,461	+		CSW01_13315	0.25	+0.1
2,834,461	+		CSW01_13315	0.25	+0.6
2,834,462	+		CSW01_13315	0.25	-1.2
2,834,462	+		CSW01_13315	0.25	-1.7
2,834,469	-		CSW01_13315	0.27	-1.0
2,834,470	-		CSW01_13315	0.27	-0.0
2,834,531	-		CSW01_13315	0.39	-0.9
2,834,550	+		CSW01_13315	0.42	-0.1
2,834,558	-		CSW01_13315	0.44	-0.0
2,834,565	-		CSW01_13315	0.45	-0.4
2,834,589	+		CSW01_13315	0.50	-0.2
2,834,597	+		CSW01_13315	0.51	-0.3
2,834,597	-		CSW01_13315	0.51	-0.2
2,834,597	-		CSW01_13315	0.51	+0.5
2,834,611	+		CSW01_13315	0.54	+0.2
2,834,611	+		CSW01_13315	0.54	-2.7
2,834,611	+		CSW01_13315	0.54	+0.5
2,834,611	+		CSW01_13315	0.54	-0.0
2,834,611	+		CSW01_13315	0.54	-1.2
2,834,619	-		CSW01_13315	0.55	-3.0
2,834,619	-		CSW01_13315	0.55	+0.5
2,834,619	-		CSW01_13315	0.55	+0.0
2,834,619	-		CSW01_13315	0.55	-0.7
2,834,628	+		CSW01_13315	0.57	+0.3
2,834,655	+		CSW01_13315	0.62	+0.6
2,834,679	-		CSW01_13315	0.67	-2.7
2,834,681	+		CSW01_13315	0.67	-0.9
2,834,713	+		CSW01_13315	0.74	-0.2
2,834,713	+		CSW01_13315	0.74	-0.8
2,834,777	+		CSW01_13315	0.86	+0.2
2,834,777	-		CSW01_13315	0.86	-0.9
2,834,789	+		CSW01_13315	0.88	-0.2
2,834,789	+		CSW01_13315	0.88	+0.2
2,834,797	-		CSW01_13315	0.90	-2.1
2,834,797	-		CSW01_13315	0.90	-0.5
2,834,860	-				+0.5
2,834,875	+				-0.3
2,834,876	+				-0.9
2,834,882	+				-2.2
2,834,883	-				-0.4
2,834,903	+		CSW01_13320	0.11	+1.7
2,834,903	+		CSW01_13320	0.11	-1.5
2,834,917	+		CSW01_13320	0.13	+0.5
2,834,930	-		CSW01_13320	0.15	+0.1
2,834,932	+		CSW01_13320	0.15	-1.4
2,834,932	+		CSW01_13320	0.15	+1.2
2,834,940	-		CSW01_13320	0.17	-0.7
2,835,023	-		CSW01_13320	0.31	-1.2
2,835,063	+		CSW01_13320	0.37	-0.3
2,835,078	+		CSW01_13320	0.40	+1.0
2,835,078	+		CSW01_13320	0.40	-0.4
2,835,078	+		CSW01_13320	0.40	+0.3
2,835,078	+		CSW01_13320	0.40	-2.9
2,835,101	+		CSW01_13320	0.44	+1.0
2,835,109	-		CSW01_13320	0.45	+0.5
2,835,191	-		CSW01_13320	0.59	-0.6
2,835,191	-		CSW01_13320	0.59	+0.4
2,835,201	+		CSW01_13320	0.60	+0.1
2,835,203	+		CSW01_13320	0.61	+0.5
2,835,209	-		CSW01_13320	0.62	+0.5
2,835,211	-		CSW01_13320	0.62	-0.1
2,835,211	-		CSW01_13320	0.62	-0.5
2,835,211	-		CSW01_13320	0.62	-0.7
2,835,211	-		CSW01_13320	0.62	+0.3
2,835,257	-		CSW01_13320	0.70	+0.2
2,835,267	+		CSW01_13320	0.71	+0.2
2,835,283	-		CSW01_13320	0.74	-0.2
2,835,312	+		CSW01_13320	0.79	+0.6
2,835,319	-		CSW01_13320	0.80	+1.0
2,835,319	-		CSW01_13320	0.80	+1.5
2,835,332	+		CSW01_13320	0.82	+0.9
2,835,332	+		CSW01_13320	0.82	+1.1
2,835,332	+		CSW01_13320	0.82	-3.5
2,835,340	-		CSW01_13320	0.83	-3.2
2,835,346	+		CSW01_13320	0.84	-0.1
2,835,405	+				-0.5
2,835,413	-				-0.2
2,835,413	-				-0.2
2,835,413	-				+0.3
2,835,414	+				-0.1
2,835,414	+				-0.5
2,835,414	+				+0.3
2,835,414	+				-0.1
2,835,422	-				-0.9
2,835,451	+				-0.2
2,835,451	+				+0.4
2,835,459	-				-0.1
2,835,484	+		CSW01_13325	0.10	+0.1
2,835,492	-		CSW01_13325	0.12	+0.1
2,835,492	-		CSW01_13325	0.12	-0.2
2,835,492	-		CSW01_13325	0.12	-0.2
2,835,663	-		CSW01_13325	0.41	+1.3
2,835,673	-		CSW01_13325	0.42	+1.3
2,835,735	+		CSW01_13325	0.53	+0.1
2,835,755	+		CSW01_13325	0.56	-0.7
2,835,758	+		CSW01_13325	0.57	+0.5
2,835,765	+		CSW01_13325	0.58	-0.8
2,835,786	+		CSW01_13325	0.62	+0.6
2,835,786	+		CSW01_13325	0.62	+0.4
2,835,794	-		CSW01_13325	0.63	+0.1
2,835,821	+		CSW01_13325	0.68	+0.1
2,835,845	-		CSW01_13325	0.72	+0.1