Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_11875

Experiment: LB_Anaerobic_60MIN_ZN4B

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB_Anaerobic_60MIN_ZN4B
2,529,698	-		CSW01_11870	0.40	-0.3
2,529,719	-		CSW01_11870	0.41	+1.7
2,529,767	+		CSW01_11870	0.45	+0.4
2,529,801	-		CSW01_11870	0.47	+0.7
2,529,809	-		CSW01_11870	0.48	-0.6
2,529,841	-		CSW01_11870	0.50	+0.4
2,529,849	-		CSW01_11870	0.51	+0.4
2,529,968	+		CSW01_11870	0.59	-1.2
2,530,064	+		CSW01_11870	0.66	-0.3
2,530,098	-		CSW01_11870	0.69	-0.8
2,530,113	-		CSW01_11870	0.70	-0.4
2,530,296	-		CSW01_11870	0.83	+0.1
2,530,301	+		CSW01_11870	0.83	-0.5
2,530,452	+				-0.0
2,530,452	+				-1.2
2,530,452	+				-2.8
2,530,452	+				-0.2
2,530,452	+				+1.0
2,530,452	+				-2.2
2,530,452	+				-2.5
2,530,457	+				+0.6
2,530,460	-				+0.3
2,530,460	-				+1.1
2,530,460	-				+1.2
2,530,460	-				-0.1
2,530,460	-				+0.2
2,530,462	+				+2.7
2,530,462	+				-0.8
2,530,462	+				+0.4
2,530,462	+				-0.3
2,530,462	+				+0.0
2,530,462	+				-1.0
2,530,465	-				-0.4
2,530,470	-				+0.1
2,530,470	-				+1.1
2,530,470	-				-1.2
2,530,470	-				-1.1
2,530,470	-				-0.7
2,530,509	-				+0.1
2,530,538	+				+1.6
2,530,604	+				+0.8
2,530,694	+				-0.7
2,530,702	-				-0.1
2,530,712	-				-0.4
2,530,803	+				-0.1
2,530,830	-				+0.1
2,530,851	+				-2.1
2,530,912	-		CSW01_11875	0.11	+0.4
2,531,017	-		CSW01_11875	0.15	-0.9
2,531,071	+		CSW01_11875	0.18	+1.1
2,531,079	-		CSW01_11875	0.18	+0.0
2,531,167	+		CSW01_11875	0.22	-0.4
2,531,175	-		CSW01_11875	0.22	-0.2
2,531,269	+		CSW01_11875	0.26	+0.4
2,531,277	-		CSW01_11875	0.26	+0.2
2,531,277	-		CSW01_11875	0.26	-0.2
2,531,277	-		CSW01_11875	0.26	+0.3
2,531,330	+		CSW01_11875	0.29	-0.5
2,531,484	+		CSW01_11875	0.35	-1.1
2,531,538	+		CSW01_11875	0.38	-0.4
2,531,714	+		CSW01_11875	0.45	-0.7
2,531,722	-		CSW01_11875	0.45	+0.4
2,531,722	-		CSW01_11875	0.45	-0.5
2,531,739	-		CSW01_11875	0.46	-1.3
2,531,763	-		CSW01_11875	0.47	-0.1
2,531,763	-		CSW01_11875	0.47	-1.1
2,531,820	-		CSW01_11875	0.50	-3.1
2,531,826	+		CSW01_11875	0.50	-0.0
2,531,837	+		CSW01_11875	0.50	+0.1
2,531,870	-		CSW01_11875	0.52	-0.5
2,531,894	-		CSW01_11875	0.53	+0.6
2,531,938	-		CSW01_11875	0.55	-0.3
2,531,954	-		CSW01_11875	0.55	+0.8
2,532,054	-		CSW01_11875	0.60	+0.0
2,532,109	+		CSW01_11875	0.62	-2.6
2,532,117	-		CSW01_11875	0.62	+0.3
2,532,149	+		CSW01_11875	0.64	+2.4
2,532,149	+		CSW01_11875	0.64	-0.7
2,532,157	-		CSW01_11875	0.64	-0.2
2,532,157	-		CSW01_11875	0.64	+0.0
2,532,255	+		CSW01_11875	0.68	+0.7
2,532,295	-		CSW01_11875	0.70	-0.5
2,532,300	-		CSW01_11875	0.70	-0.7
2,532,300	-		CSW01_11875	0.70	+0.0
2,532,307	+		CSW01_11875	0.70	-0.1
2,532,371	+		CSW01_11875	0.73	-3.0
2,532,431	+		CSW01_11875	0.76	-0.1
2,532,431	+		CSW01_11875	0.76	-0.4
2,532,431	+		CSW01_11875	0.76	-0.5
2,532,431	+		CSW01_11875	0.76	-1.5
2,532,431	+		CSW01_11875	0.76	+0.8
2,532,439	-		CSW01_11875	0.76	-0.1
2,532,439	-		CSW01_11875	0.76	+1.1
2,532,439	-		CSW01_11875	0.76	-0.7
2,532,439	-		CSW01_11875	0.76	+0.1
2,532,502	-		CSW01_11875	0.79	+0.2
2,532,538	-		CSW01_11875	0.80	-0.7
2,532,543	-		CSW01_11875	0.81	+1.0
2,532,552	-		CSW01_11875	0.81	+1.2
2,532,586	+		CSW01_11875	0.82	-1.2
2,532,613	-		CSW01_11875	0.84	-0.3
2,532,673	+		CSW01_11875	0.86	-0.4
2,532,673	+		CSW01_11875	0.86	-0.6
2,532,681	-		CSW01_11875	0.86	-0.2
2,532,681	-		CSW01_11875	0.86	+0.8
2,532,681	-		CSW01_11875	0.86	+0.3
2,532,689	-		CSW01_11875	0.87	+2.0
2,532,689	-		CSW01_11875	0.87	+0.6
2,532,691	-		CSW01_11875	0.87	+1.1
2,532,767	+				-0.2
2,532,767	+				+0.0
2,532,786	+				-2.2
2,532,823	+				+0.0
2,532,826	+				+0.7
2,532,828	+				-0.8
2,532,828	+				-0.0
2,532,831	-				+1.6
2,532,892	+				+2.7
2,532,900	-				-0.2
2,532,900	-				+0.9
2,532,966	-				-0.0
2,532,972	+				+0.7
2,532,972	+				+0.1
2,532,980	-				+0.6
2,532,980	-				+0.4
2,532,990	-				-0.5
2,532,995	-				-0.2
2,533,019	-		CSW01_11880	0.31	+0.7
2,533,130	+		CSW01_11880	0.89	-0.3
2,533,137	-				+2.4
2,533,138	-				+0.3
2,533,138	-				-1.5
2,533,154	-				-1.0
2,533,201	+				-1.2
2,533,209	-				-0.5
2,533,209	-				-1.1
2,533,209	-				-1.7
2,533,280	-				-0.6
2,533,280	-				-1.4
2,533,309	+		CSW01_11885	0.11	+0.5
2,533,391	+		CSW01_11885	0.19	-0.1
2,533,435	-		CSW01_11885	0.24	-0.9
2,533,492	-		CSW01_11885	0.29	+1.0
2,533,492	-		CSW01_11885	0.29	-0.2
2,533,519	+		CSW01_11885	0.32	+0.1
2,533,519	+		CSW01_11885	0.32	+0.3
2,533,519	+		CSW01_11885	0.32	-1.4
2,533,519	+		CSW01_11885	0.32	-1.5
2,533,519	+		CSW01_11885	0.32	+0.2
2,533,519	+		CSW01_11885	0.32	+0.3
2,533,519	+		CSW01_11885	0.32	-0.6
2,533,519	+		CSW01_11885	0.32	+0.7
2,533,519	+		CSW01_11885	0.32	+0.2
2,533,527	-		CSW01_11885	0.33	+0.7
2,533,527	-		CSW01_11885	0.33	-0.0
2,533,527	-		CSW01_11885	0.33	+1.8
2,533,527	-		CSW01_11885	0.33	-0.4
2,533,527	-		CSW01_11885	0.33	+1.5
2,533,527	-		CSW01_11885	0.33	-0.5
2,533,527	-		CSW01_11885	0.33	-0.8
2,533,527	-		CSW01_11885	0.33	+0.3
2,533,529	+		CSW01_11885	0.33	-0.3
2,533,529	+		CSW01_11885	0.33	+0.4
2,533,529	+		CSW01_11885	0.33	+0.1
2,533,529	-		CSW01_11885	0.33	-3.1
2,533,537	-		CSW01_11885	0.34	-0.2
2,533,540	+		CSW01_11885	0.34	+0.4
2,533,548	-		CSW01_11885	0.35	+0.5
2,533,562	+		CSW01_11885	0.36	-0.1
2,533,582	-		CSW01_11885	0.38	+0.6
2,533,612	+		CSW01_11885	0.41	+0.3
2,533,662	+		CSW01_11885	0.47	-0.7
2,533,707	-		CSW01_11885	0.51	+0.8
2,533,707	-		CSW01_11885	0.51	+1.1
2,533,723	+		CSW01_11885	0.53	+0.3
2,533,731	-		CSW01_11885	0.53	+0.4
2,533,738	+		CSW01_11885	0.54	-0.2
2,533,753	-		CSW01_11885	0.56	-0.0
2,533,757	-		CSW01_11885	0.56	+1.1
2,533,889	-		CSW01_11885	0.70	-1.9
2,533,899	-		CSW01_11885	0.71	-0.1
2,533,940	+		CSW01_11885	0.75	-0.6
2,533,941	-		CSW01_11885	0.75	+0.8
2,533,947	+		CSW01_11885	0.75	+0.2
2,533,997	+		CSW01_11885	0.80	+0.7