Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_10740

Experiment: LB_Anaerobic_60MIN_ZN4B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_10735 and CSW01_10740 overlap by 73 nucleotidesCSW01_10740 and CSW01_10745 overlap by 11 nucleotidesCSW01_10745 and CSW01_10750 are separated by 92 nucleotides CSW01_10735: CSW01_10735 - succinyl-diaminopimelate desuccinylase, at 2,302,031 to 2,303,164 _10735 CSW01_10740: CSW01_10740 - peptidase M15, at 2,303,092 to 2,303,841 _10740 CSW01_10745: CSW01_10745 - DUF2897 domain-containing protein, at 2,303,831 to 2,304,055 _10745 CSW01_10750: CSW01_10750 - outer membrane protein assembly factor BamC, at 2,304,148 to 2,305,167 _10750 Position (kb) 2303 2304Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2302.825 kb on - strand, within CSW01_10735at 2302.904 kb on + strand, within CSW01_10735at 2303.035 kb on - strand, within CSW01_10735at 2303.171 kb on - strand, within CSW01_10740at 2303.844 kb on - strandat 2303.862 kb on - strand, within CSW01_10745at 2303.862 kb on - strand, within CSW01_10745at 2304.017 kb on - strand, within CSW01_10745at 2304.018 kb on + strand, within CSW01_10745at 2304.167 kb on + strandat 2304.213 kb on + strandat 2304.250 kb on - strand, within CSW01_10750at 2304.275 kb on - strand, within CSW01_10750at 2304.311 kb on - strand, within CSW01_10750at 2304.726 kb on - strand, within CSW01_10750at 2304.837 kb on - strand, within CSW01_10750

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_60MIN_ZN4B
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2,302,825 - CSW01_10735 0.70 +0.3
2,302,904 + CSW01_10735 0.77 +0.3
2,303,035 - CSW01_10735 0.89 +0.3
2,303,171 - CSW01_10740 0.11 -0.3
2,303,844 - -0.9
2,303,862 - CSW01_10745 0.14 +1.0
2,303,862 - CSW01_10745 0.14 +2.9
2,304,017 - CSW01_10745 0.83 -0.7
2,304,018 + CSW01_10745 0.83 +0.2
2,304,167 + -2.0
2,304,213 + +1.3
2,304,250 - CSW01_10750 0.10 +0.3
2,304,275 - CSW01_10750 0.12 +0.4
2,304,311 - CSW01_10750 0.16 -0.3
2,304,726 - CSW01_10750 0.57 +1.7
2,304,837 - CSW01_10750 0.68 -2.3

Or see this region's nucleotide sequence