Experiment: LB_Anaerobic_60MIN_ZN4B
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_09295 and CSW01_09300 overlap by 16 nucleotides CSW01_09300 and CSW01_09305 are separated by 0 nucleotides CSW01_09305 and CSW01_09310 are separated by 23 nucleotides CSW01_09310 and CSW01_09315 are separated by 197 nucleotides
CSW01_09295: CSW01_09295 - hypothetical protein, at 1,995,147 to 1,995,926
_09295
CSW01_09300: CSW01_09300 - prepilin peptidase, at 1,995,911 to 1,996,474
_09300
CSW01_09305: CSW01_09305 - primosomal protein, at 1,996,475 to 1,996,687
_09305
CSW01_09310: CSW01_09310 - methyl-accepting chemotaxis protein, at 1,996,711 to 1,998,831
_09310
CSW01_09315: CSW01_09315 - exodeoxyribonuclease III, at 1,999,029 to 1,999,835
_09315
Position (kb)
1996
1997
1998
1999 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1995.739 kb on + strand, within CSW01_09295 at 1995.747 kb on - strand, within CSW01_09295 at 1995.752 kb on + strand, within CSW01_09295 at 1995.820 kb on - strand, within CSW01_09295 at 1995.830 kb on - strand, within CSW01_09295 at 1995.854 kb on - strand at 1995.854 kb on - strand at 1996.015 kb on - strand, within CSW01_09300 at 1996.031 kb on + strand, within CSW01_09300 at 1996.054 kb on + strand, within CSW01_09300 at 1996.062 kb on - strand, within CSW01_09300 at 1996.097 kb on + strand, within CSW01_09300 at 1996.105 kb on - strand, within CSW01_09300 at 1996.147 kb on + strand, within CSW01_09300 at 1996.155 kb on - strand, within CSW01_09300 at 1996.182 kb on - strand, within CSW01_09300 at 1996.184 kb on - strand, within CSW01_09300 at 1996.313 kb on + strand, within CSW01_09300 at 1996.382 kb on + strand, within CSW01_09300 at 1996.390 kb on - strand, within CSW01_09300 at 1996.514 kb on - strand, within CSW01_09305 at 1996.672 kb on + strand at 1996.738 kb on + strand at 1996.932 kb on + strand, within CSW01_09310 at 1996.937 kb on + strand, within CSW01_09310 at 1996.945 kb on - strand, within CSW01_09310 at 1996.955 kb on - strand, within CSW01_09310 at 1996.973 kb on + strand, within CSW01_09310 at 1996.973 kb on + strand, within CSW01_09310 at 1996.973 kb on + strand, within CSW01_09310 at 1996.973 kb on + strand, within CSW01_09310 at 1996.973 kb on + strand, within CSW01_09310 at 1996.981 kb on - strand, within CSW01_09310 at 1996.981 kb on - strand, within CSW01_09310 at 1996.981 kb on - strand, within CSW01_09310 at 1996.981 kb on - strand, within CSW01_09310 at 1996.981 kb on - strand, within CSW01_09310 at 1996.999 kb on + strand, within CSW01_09310 at 1997.234 kb on + strand, within CSW01_09310 at 1997.234 kb on + strand, within CSW01_09310 at 1997.309 kb on + strand, within CSW01_09310 at 1997.315 kb on - strand, within CSW01_09310 at 1997.325 kb on + strand, within CSW01_09310 at 1997.408 kb on - strand, within CSW01_09310 at 1997.450 kb on + strand, within CSW01_09310 at 1997.495 kb on + strand, within CSW01_09310 at 1997.495 kb on + strand, within CSW01_09310 at 1997.505 kb on + strand, within CSW01_09310 at 1997.513 kb on - strand, within CSW01_09310 at 1997.567 kb on - strand, within CSW01_09310 at 1997.588 kb on - strand, within CSW01_09310 at 1997.639 kb on + strand, within CSW01_09310 at 1997.655 kb on - strand, within CSW01_09310 at 1997.655 kb on - strand, within CSW01_09310 at 1997.704 kb on - strand, within CSW01_09310 at 1997.715 kb on + strand, within CSW01_09310 at 1997.723 kb on - strand, within CSW01_09310 at 1997.828 kb on - strand, within CSW01_09310 at 1997.936 kb on + strand, within CSW01_09310 at 1997.936 kb on + strand, within CSW01_09310 at 1997.944 kb on - strand, within CSW01_09310 at 1997.958 kb on + strand, within CSW01_09310 at 1997.970 kb on + strand, within CSW01_09310 at 1998.081 kb on - strand, within CSW01_09310 at 1998.138 kb on + strand, within CSW01_09310 at 1998.240 kb on + strand, within CSW01_09310 at 1998.240 kb on + strand, within CSW01_09310 at 1998.240 kb on + strand, within CSW01_09310 at 1998.240 kb on + strand, within CSW01_09310 at 1998.240 kb on + strand, within CSW01_09310 at 1998.240 kb on + strand, within CSW01_09310 at 1998.248 kb on - strand, within CSW01_09310 at 1998.258 kb on - strand, within CSW01_09310 at 1998.441 kb on - strand, within CSW01_09310 at 1998.604 kb on + strand, within CSW01_09310 at 1998.612 kb on - strand, within CSW01_09310 at 1998.693 kb on + strand at 1998.701 kb on - strand at 1998.802 kb on + strand at 1998.837 kb on + strand at 1998.867 kb on - strand at 1998.867 kb on - strand at 1998.947 kb on + strand at 1999.002 kb on + strand at 1999.021 kb on - strand at 1999.086 kb on - strand at 1999.108 kb on - strand at 1999.264 kb on - strand, within CSW01_09315 at 1999.320 kb on + strand, within CSW01_09315 at 1999.453 kb on + strand, within CSW01_09315 at 1999.562 kb on - strand, within CSW01_09315 at 1999.687 kb on + strand, within CSW01_09315 at 1999.695 kb on - strand, within CSW01_09315 at 1999.715 kb on - strand, within CSW01_09315 at 1999.732 kb on + strand, within CSW01_09315 at 1999.740 kb on - strand, within CSW01_09315 at 1999.740 kb on - strand, within CSW01_09315 at 1999.798 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB_Anaerobic_60MIN_ZN4B remove 1,995,739 + CSW01_09295 0.76 +0.0 1,995,747 - CSW01_09295 0.77 -0.1 1,995,752 + CSW01_09295 0.78 -2.5 1,995,820 - CSW01_09295 0.86 +2.0 1,995,830 - CSW01_09295 0.88 +1.1 1,995,854 - -1.2 1,995,854 - -0.2 1,996,015 - CSW01_09300 0.18 +0.5 1,996,031 + CSW01_09300 0.21 +0.9 1,996,054 + CSW01_09300 0.25 +0.3 1,996,062 - CSW01_09300 0.27 +0.2 1,996,097 + CSW01_09300 0.33 -1.2 1,996,105 - CSW01_09300 0.34 -0.3 1,996,147 + CSW01_09300 0.42 -0.1 1,996,155 - CSW01_09300 0.43 -0.7 1,996,182 - CSW01_09300 0.48 -0.3 1,996,184 - CSW01_09300 0.48 -1.9 1,996,313 + CSW01_09300 0.71 -0.6 1,996,382 + CSW01_09300 0.84 -3.3 1,996,390 - CSW01_09300 0.85 +1.0 1,996,514 - CSW01_09305 0.18 +0.5 1,996,672 + -0.1 1,996,738 + -0.6 1,996,932 + CSW01_09310 0.10 -0.9 1,996,937 + CSW01_09310 0.11 -0.6 1,996,945 - CSW01_09310 0.11 -0.5 1,996,955 - CSW01_09310 0.12 +0.4 1,996,973 + CSW01_09310 0.12 -0.4 1,996,973 + CSW01_09310 0.12 +0.3 1,996,973 + CSW01_09310 0.12 +2.0 1,996,973 + CSW01_09310 0.12 +1.6 1,996,973 + CSW01_09310 0.12 +1.7 1,996,981 - CSW01_09310 0.13 -1.7 1,996,981 - CSW01_09310 0.13 +0.4 1,996,981 - CSW01_09310 0.13 +0.3 1,996,981 - CSW01_09310 0.13 -0.1 1,996,981 - CSW01_09310 0.13 -0.9 1,996,999 + CSW01_09310 0.14 +1.2 1,997,234 + CSW01_09310 0.25 -0.5 1,997,234 + CSW01_09310 0.25 +0.2 1,997,309 + CSW01_09310 0.28 +1.3 1,997,315 - CSW01_09310 0.28 +1.0 1,997,325 + CSW01_09310 0.29 +0.5 1,997,408 - CSW01_09310 0.33 -1.5 1,997,450 + CSW01_09310 0.35 -0.0 1,997,495 + CSW01_09310 0.37 +1.3 1,997,495 + CSW01_09310 0.37 +0.8 1,997,505 + CSW01_09310 0.37 +0.6 1,997,513 - CSW01_09310 0.38 -1.5 1,997,567 - CSW01_09310 0.40 -0.1 1,997,588 - CSW01_09310 0.41 -0.1 1,997,639 + CSW01_09310 0.44 +0.4 1,997,655 - CSW01_09310 0.45 +0.7 1,997,655 - CSW01_09310 0.45 +0.1 1,997,704 - CSW01_09310 0.47 -1.2 1,997,715 + CSW01_09310 0.47 +0.2 1,997,723 - CSW01_09310 0.48 -0.4 1,997,828 - CSW01_09310 0.53 -0.7 1,997,936 + CSW01_09310 0.58 +0.2 1,997,936 + CSW01_09310 0.58 -0.3 1,997,944 - CSW01_09310 0.58 +0.3 1,997,958 + CSW01_09310 0.59 -1.0 1,997,970 + CSW01_09310 0.59 -0.1 1,998,081 - CSW01_09310 0.65 +0.5 1,998,138 + CSW01_09310 0.67 +1.0 1,998,240 + CSW01_09310 0.72 +0.4 1,998,240 + CSW01_09310 0.72 +0.6 1,998,240 + CSW01_09310 0.72 -1.7 1,998,240 + CSW01_09310 0.72 +0.1 1,998,240 + CSW01_09310 0.72 -0.6 1,998,240 + CSW01_09310 0.72 -0.0 1,998,248 - CSW01_09310 0.72 +1.0 1,998,258 - CSW01_09310 0.73 +1.8 1,998,441 - CSW01_09310 0.82 +0.4 1,998,604 + CSW01_09310 0.89 -1.0 1,998,612 - CSW01_09310 0.90 -1.8 1,998,693 + +0.1 1,998,701 - -2.0 1,998,802 + -0.0 1,998,837 + -1.1 1,998,867 - +1.4 1,998,867 - -0.1 1,998,947 + -0.8 1,999,002 + +0.8 1,999,021 - -0.1 1,999,086 - +2.0 1,999,108 - +0.6 1,999,264 - CSW01_09315 0.29 -0.4 1,999,320 + CSW01_09315 0.36 +0.0 1,999,453 + CSW01_09315 0.53 +0.7 1,999,562 - CSW01_09315 0.66 +1.6 1,999,687 + CSW01_09315 0.82 +1.0 1,999,695 - CSW01_09315 0.83 +0.8 1,999,715 - CSW01_09315 0.85 +1.3 1,999,732 + CSW01_09315 0.87 +0.4 1,999,740 - CSW01_09315 0.88 -0.2 1,999,740 - CSW01_09315 0.88 +1.3 1,999,798 - -2.0
Or see this region's nucleotide sequence