Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_07740

Experiment: LB_Anaerobic_60MIN_ZN4B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_07735 and CSW01_07740 are separated by 203 nucleotidesCSW01_07740 and CSW01_07745 are separated by 6 nucleotidesCSW01_07745 and CSW01_07750 are separated by 99 nucleotides CSW01_07735: CSW01_07735 - multidrug resistance protein NorM, at 1,651,093 to 1,652,466 _07735 CSW01_07740: CSW01_07740 - DUF3080 domain-containing protein, at 1,652,670 to 1,653,653 _07740 CSW01_07745: CSW01_07745 - DNA ligase, at 1,653,660 to 1,654,508 _07745 CSW01_07750: CSW01_07750 - hypothetical protein, at 1,654,608 to 1,654,793 _07750 Position (kb) 1652 1653 1654Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1651.724 kb on - strand, within CSW01_07735at 1651.814 kb on + strand, within CSW01_07735at 1651.976 kb on + strand, within CSW01_07735at 1651.976 kb on + strand, within CSW01_07735at 1651.982 kb on - strand, within CSW01_07735at 1652.065 kb on + strand, within CSW01_07735at 1652.115 kb on + strand, within CSW01_07735at 1652.123 kb on - strand, within CSW01_07735at 1652.236 kb on + strand, within CSW01_07735at 1652.273 kb on + strand, within CSW01_07735at 1652.278 kb on + strand, within CSW01_07735at 1652.297 kb on + strand, within CSW01_07735at 1652.305 kb on - strand, within CSW01_07735at 1652.443 kb on + strandat 1652.443 kb on + strandat 1652.451 kb on - strandat 1652.451 kb on - strandat 1652.453 kb on - strandat 1652.558 kb on + strandat 1652.790 kb on + strand, within CSW01_07740at 1652.850 kb on + strand, within CSW01_07740at 1652.884 kb on + strand, within CSW01_07740at 1652.884 kb on + strand, within CSW01_07740at 1652.892 kb on - strand, within CSW01_07740at 1653.010 kb on + strand, within CSW01_07740at 1653.105 kb on - strand, within CSW01_07740at 1653.170 kb on + strand, within CSW01_07740at 1653.188 kb on + strand, within CSW01_07740at 1653.209 kb on - strand, within CSW01_07740at 1653.213 kb on + strand, within CSW01_07740at 1653.255 kb on + strand, within CSW01_07740at 1653.352 kb on - strand, within CSW01_07740at 1653.515 kb on - strand, within CSW01_07740at 1653.538 kb on - strand, within CSW01_07740at 1653.848 kb on - strand, within CSW01_07745at 1653.940 kb on + strand, within CSW01_07745at 1653.968 kb on + strand, within CSW01_07745at 1653.968 kb on + strand, within CSW01_07745at 1653.976 kb on - strand, within CSW01_07745at 1653.976 kb on - strand, within CSW01_07745at 1654.052 kb on - strand, within CSW01_07745at 1654.148 kb on + strand, within CSW01_07745at 1654.154 kb on + strand, within CSW01_07745at 1654.156 kb on - strand, within CSW01_07745at 1654.191 kb on + strand, within CSW01_07745at 1654.294 kb on + strand, within CSW01_07745at 1654.302 kb on - strand, within CSW01_07745at 1654.478 kb on + strandat 1654.596 kb on - strandat 1654.627 kb on + strand, within CSW01_07750

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_60MIN_ZN4B
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1,651,724 - CSW01_07735 0.46 -1.1
1,651,814 + CSW01_07735 0.52 -0.4
1,651,976 + CSW01_07735 0.64 +1.0
1,651,976 + CSW01_07735 0.64 +0.6
1,651,982 - CSW01_07735 0.65 -0.9
1,652,065 + CSW01_07735 0.71 +1.0
1,652,115 + CSW01_07735 0.74 -0.2
1,652,123 - CSW01_07735 0.75 -0.9
1,652,236 + CSW01_07735 0.83 -0.1
1,652,273 + CSW01_07735 0.86 +1.3
1,652,278 + CSW01_07735 0.86 +0.2
1,652,297 + CSW01_07735 0.88 +1.0
1,652,305 - CSW01_07735 0.88 -0.2
1,652,443 + -0.5
1,652,443 + +0.9
1,652,451 - +1.6
1,652,451 - -1.0
1,652,453 - -2.4
1,652,558 + -0.0
1,652,790 + CSW01_07740 0.12 -1.3
1,652,850 + CSW01_07740 0.18 +1.9
1,652,884 + CSW01_07740 0.22 -2.5
1,652,884 + CSW01_07740 0.22 -2.0
1,652,892 - CSW01_07740 0.23 -0.7
1,653,010 + CSW01_07740 0.35 -0.8
1,653,105 - CSW01_07740 0.44 +0.7
1,653,170 + CSW01_07740 0.51 +0.5
1,653,188 + CSW01_07740 0.53 +1.2
1,653,209 - CSW01_07740 0.55 -1.5
1,653,213 + CSW01_07740 0.55 +0.6
1,653,255 + CSW01_07740 0.59 +0.7
1,653,352 - CSW01_07740 0.69 -2.0
1,653,515 - CSW01_07740 0.86 -1.4
1,653,538 - CSW01_07740 0.88 +0.2
1,653,848 - CSW01_07745 0.22 -0.7
1,653,940 + CSW01_07745 0.33 +0.3
1,653,968 + CSW01_07745 0.36 +0.5
1,653,968 + CSW01_07745 0.36 -0.5
1,653,976 - CSW01_07745 0.37 +0.3
1,653,976 - CSW01_07745 0.37 -0.6
1,654,052 - CSW01_07745 0.46 -1.9
1,654,148 + CSW01_07745 0.57 -0.5
1,654,154 + CSW01_07745 0.58 +0.6
1,654,156 - CSW01_07745 0.58 -0.9
1,654,191 + CSW01_07745 0.63 +0.5
1,654,294 + CSW01_07745 0.75 -2.9
1,654,302 - CSW01_07745 0.76 -0.7
1,654,478 + +0.2
1,654,596 - +0.8
1,654,627 + CSW01_07750 0.10 +0.7

Or see this region's nucleotide sequence