Experiment: LB_Anaerobic_60MIN_ZN4B
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_07670 and CSW01_07675 overlap by 4 nucleotides CSW01_07675 and CSW01_07680 are separated by 130 nucleotides CSW01_07680 and CSW01_07685 are separated by 43 nucleotides CSW01_07685 and CSW01_07690 overlap by 47 nucleotides CSW01_07690 and CSW01_07695 are separated by 73 nucleotides
CSW01_07670: CSW01_07670 - amino acid ABC transporter, at 1,641,950 to 1,642,306
_07670
CSW01_07675: CSW01_07675 - amino acid ABC transporter, at 1,642,303 to 1,642,608
_07675
CSW01_07680: CSW01_07680 - hypothetical protein, at 1,642,739 to 1,642,900
_07680
CSW01_07685: CSW01_07685 - DUF2960 domain-containing protein, at 1,642,944 to 1,643,219
_07685
CSW01_07690: CSW01_07690 - hypothetical protein, at 1,643,173 to 1,643,352
_07690
CSW01_07695: CSW01_07695 - N-acetylglucosamine kinase, at 1,643,426 to 1,644,334
_07695
Position (kb)
1642
1643
1644 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1641.974 kb on - strand at 1641.997 kb on - strand, within CSW01_07670 at 1642.412 kb on - strand, within CSW01_07675 at 1642.436 kb on - strand, within CSW01_07675 at 1642.575 kb on - strand, within CSW01_07675 at 1642.599 kb on - strand at 1642.729 kb on + strand at 1642.730 kb on + strand at 1642.830 kb on - strand, within CSW01_07680 at 1642.922 kb on - strand at 1642.932 kb on - strand at 1642.932 kb on - strand at 1642.932 kb on - strand at 1642.949 kb on - strand at 1642.959 kb on + strand at 1643.047 kb on + strand, within CSW01_07685 at 1643.047 kb on + strand, within CSW01_07685 at 1643.047 kb on + strand, within CSW01_07685 at 1643.047 kb on + strand, within CSW01_07685 at 1643.047 kb on + strand, within CSW01_07685 at 1643.055 kb on - strand, within CSW01_07685 at 1643.399 kb on - strand at 1643.428 kb on + strand at 1643.516 kb on - strand at 1643.670 kb on + strand, within CSW01_07695 at 1643.678 kb on - strand, within CSW01_07695 at 1643.747 kb on - strand, within CSW01_07695 at 1643.903 kb on + strand, within CSW01_07695 at 1643.903 kb on + strand, within CSW01_07695 at 1643.913 kb on + strand, within CSW01_07695 at 1643.913 kb on + strand, within CSW01_07695 at 1643.913 kb on + strand, within CSW01_07695 at 1643.968 kb on - strand, within CSW01_07695 at 1643.994 kb on + strand, within CSW01_07695 at 1643.994 kb on + strand, within CSW01_07695 at 1643.994 kb on + strand, within CSW01_07695 at 1644.002 kb on - strand, within CSW01_07695 at 1644.002 kb on - strand, within CSW01_07695 at 1644.004 kb on + strand, within CSW01_07695 at 1644.097 kb on + strand, within CSW01_07695 at 1644.112 kb on - strand, within CSW01_07695 at 1644.151 kb on + strand, within CSW01_07695 at 1644.181 kb on - strand, within CSW01_07695 at 1644.194 kb on + strand, within CSW01_07695
Per-strain Table
Position Strand Gene LocusTag Fraction LB_Anaerobic_60MIN_ZN4B remove 1,641,974 - +0.2 1,641,997 - CSW01_07670 0.13 +1.8 1,642,412 - CSW01_07675 0.36 +0.1 1,642,436 - CSW01_07675 0.43 +1.1 1,642,575 - CSW01_07675 0.89 -0.5 1,642,599 - -0.3 1,642,729 + +0.4 1,642,730 + +0.8 1,642,830 - CSW01_07680 0.56 -3.0 1,642,922 - -0.7 1,642,932 - -0.2 1,642,932 - +0.9 1,642,932 - +0.3 1,642,949 - +0.6 1,642,959 + -0.6 1,643,047 + CSW01_07685 0.37 +0.4 1,643,047 + CSW01_07685 0.37 -1.5 1,643,047 + CSW01_07685 0.37 +0.6 1,643,047 + CSW01_07685 0.37 +1.4 1,643,047 + CSW01_07685 0.37 +0.8 1,643,055 - CSW01_07685 0.40 +0.7 1,643,399 - -0.8 1,643,428 + +1.4 1,643,516 - -0.8 1,643,670 + CSW01_07695 0.27 +0.9 1,643,678 - CSW01_07695 0.28 +0.1 1,643,747 - CSW01_07695 0.35 +0.3 1,643,903 + CSW01_07695 0.52 -0.5 1,643,903 + CSW01_07695 0.52 -1.5 1,643,913 + CSW01_07695 0.54 -1.3 1,643,913 + CSW01_07695 0.54 -0.5 1,643,913 + CSW01_07695 0.54 +0.1 1,643,968 - CSW01_07695 0.60 -1.8 1,643,994 + CSW01_07695 0.62 +0.2 1,643,994 + CSW01_07695 0.62 +0.7 1,643,994 + CSW01_07695 0.62 +1.0 1,644,002 - CSW01_07695 0.63 -2.1 1,644,002 - CSW01_07695 0.63 -0.3 1,644,004 + CSW01_07695 0.64 +0.6 1,644,097 + CSW01_07695 0.74 +1.2 1,644,112 - CSW01_07695 0.75 +1.9 1,644,151 + CSW01_07695 0.80 -0.8 1,644,181 - CSW01_07695 0.83 +0.8 1,644,194 + CSW01_07695 0.84 +0.4
Or see this region's nucleotide sequence