Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_05900

Experiment: LB_Anaerobic_60MIN_ZN4B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_05895 and CSW01_05900 are separated by 111 nucleotidesCSW01_05900 and CSW01_05905 are separated by 137 nucleotides CSW01_05895: CSW01_05895 - tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB, at 1,233,756 to 1,234,727 _05895 CSW01_05900: CSW01_05900 - carboxy-S-adenosyl-L-methionine synthase CmoA, at 1,234,839 to 1,235,567 _05900 CSW01_05905: CSW01_05905 - DUF72 domain-containing protein, at 1,235,705 to 1,236,574 _05905 Position (kb) 1234 1235 1236Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1233.864 kb on - strand, within CSW01_05895at 1233.871 kb on + strand, within CSW01_05895at 1233.871 kb on + strand, within CSW01_05895at 1233.871 kb on + strand, within CSW01_05895at 1233.871 kb on + strand, within CSW01_05895at 1233.879 kb on - strand, within CSW01_05895at 1233.879 kb on - strand, within CSW01_05895at 1233.879 kb on - strand, within CSW01_05895at 1233.879 kb on - strand, within CSW01_05895at 1233.932 kb on - strand, within CSW01_05895at 1234.170 kb on - strand, within CSW01_05895at 1234.170 kb on - strand, within CSW01_05895at 1234.181 kb on + strand, within CSW01_05895at 1234.189 kb on - strand, within CSW01_05895at 1234.189 kb on - strand, within CSW01_05895at 1234.189 kb on - strand, within CSW01_05895at 1234.189 kb on - strand, within CSW01_05895at 1234.222 kb on - strand, within CSW01_05895at 1234.262 kb on + strand, within CSW01_05895at 1234.271 kb on + strand, within CSW01_05895at 1234.271 kb on + strand, within CSW01_05895at 1234.284 kb on - strand, within CSW01_05895at 1234.305 kb on - strand, within CSW01_05895at 1234.446 kb on + strand, within CSW01_05895at 1234.474 kb on - strand, within CSW01_05895at 1234.482 kb on - strand, within CSW01_05895at 1234.482 kb on - strand, within CSW01_05895at 1234.482 kb on - strand, within CSW01_05895at 1234.616 kb on - strand, within CSW01_05895at 1234.623 kb on + strand, within CSW01_05895at 1234.623 kb on + strand, within CSW01_05895at 1234.623 kb on + strand, within CSW01_05895at 1234.660 kb on + strandat 1234.709 kb on - strandat 1234.742 kb on + strandat 1235.234 kb on + strand, within CSW01_05900at 1235.237 kb on - strand, within CSW01_05900at 1235.265 kb on - strand, within CSW01_05900at 1235.265 kb on - strand, within CSW01_05900at 1235.265 kb on - strand, within CSW01_05900at 1235.475 kb on - strand, within CSW01_05900at 1235.504 kb on + strandat 1235.504 kb on + strandat 1235.512 kb on - strandat 1235.574 kb on + strandat 1235.574 kb on + strandat 1235.580 kb on - strandat 1235.719 kb on + strandat 1235.728 kb on + strandat 1235.736 kb on - strandat 1235.757 kb on - strandat 1235.764 kb on + strandat 1235.964 kb on - strand, within CSW01_05905at 1235.986 kb on - strand, within CSW01_05905at 1236.024 kb on + strand, within CSW01_05905at 1236.024 kb on + strand, within CSW01_05905at 1236.032 kb on - strand, within CSW01_05905at 1236.032 kb on - strand, within CSW01_05905at 1236.056 kb on + strand, within CSW01_05905at 1236.064 kb on - strand, within CSW01_05905at 1236.064 kb on - strand, within CSW01_05905at 1236.148 kb on + strand, within CSW01_05905at 1236.148 kb on + strand, within CSW01_05905at 1236.148 kb on + strand, within CSW01_05905at 1236.148 kb on + strand, within CSW01_05905at 1236.156 kb on - strand, within CSW01_05905at 1236.156 kb on - strand, within CSW01_05905at 1236.156 kb on - strand, within CSW01_05905at 1236.156 kb on - strand, within CSW01_05905at 1236.301 kb on + strand, within CSW01_05905at 1236.301 kb on + strand, within CSW01_05905at 1236.303 kb on + strand, within CSW01_05905at 1236.309 kb on - strand, within CSW01_05905at 1236.347 kb on - strand, within CSW01_05905at 1236.349 kb on + strand, within CSW01_05905at 1236.349 kb on + strand, within CSW01_05905at 1236.349 kb on + strand, within CSW01_05905at 1236.349 kb on + strand, within CSW01_05905at 1236.357 kb on - strand, within CSW01_05905at 1236.357 kb on - strand, within CSW01_05905at 1236.357 kb on - strand, within CSW01_05905at 1236.357 kb on - strand, within CSW01_05905at 1236.357 kb on - strand, within CSW01_05905at 1236.357 kb on - strand, within CSW01_05905at 1236.357 kb on - strand, within CSW01_05905at 1236.357 kb on - strand, within CSW01_05905at 1236.357 kb on - strand, within CSW01_05905at 1236.364 kb on - strand, within CSW01_05905at 1236.397 kb on + strand, within CSW01_05905at 1236.397 kb on + strand, within CSW01_05905at 1236.397 kb on + strand, within CSW01_05905at 1236.400 kb on - strand, within CSW01_05905at 1236.402 kb on + strand, within CSW01_05905at 1236.405 kb on - strand, within CSW01_05905at 1236.405 kb on - strand, within CSW01_05905at 1236.405 kb on - strand, within CSW01_05905at 1236.410 kb on - strand, within CSW01_05905at 1236.440 kb on - strand, within CSW01_05905at 1236.445 kb on - strand, within CSW01_05905at 1236.476 kb on + strand, within CSW01_05905at 1236.478 kb on + strand, within CSW01_05905at 1236.484 kb on - strand, within CSW01_05905at 1236.486 kb on - strand, within CSW01_05905at 1236.486 kb on - strand, within CSW01_05905at 1236.525 kb on - strandat 1236.533 kb on - strandat 1236.538 kb on + strandat 1236.538 kb on + strandat 1236.538 kb on + strandat 1236.538 kb on + strandat 1236.538 kb on + strandat 1236.546 kb on - strandat 1236.546 kb on - strandat 1236.546 kb on - strandat 1236.546 kb on - strandat 1236.546 kb on - strandat 1236.546 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_60MIN_ZN4B
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1,233,864 - CSW01_05895 0.11 -0.6
1,233,871 + CSW01_05895 0.12 -0.2
1,233,871 + CSW01_05895 0.12 -3.3
1,233,871 + CSW01_05895 0.12 +0.1
1,233,871 + CSW01_05895 0.12 -1.3
1,233,879 - CSW01_05895 0.13 -0.8
1,233,879 - CSW01_05895 0.13 -0.3
1,233,879 - CSW01_05895 0.13 -0.0
1,233,879 - CSW01_05895 0.13 -0.3
1,233,932 - CSW01_05895 0.18 -0.6
1,234,170 - CSW01_05895 0.43 +0.2
1,234,170 - CSW01_05895 0.43 +1.4
1,234,181 + CSW01_05895 0.44 -0.7
1,234,189 - CSW01_05895 0.45 -2.1
1,234,189 - CSW01_05895 0.45 -1.3
1,234,189 - CSW01_05895 0.45 -0.1
1,234,189 - CSW01_05895 0.45 +0.2
1,234,222 - CSW01_05895 0.48 +0.1
1,234,262 + CSW01_05895 0.52 -1.0
1,234,271 + CSW01_05895 0.53 +1.5
1,234,271 + CSW01_05895 0.53 +1.5
1,234,284 - CSW01_05895 0.54 -0.9
1,234,305 - CSW01_05895 0.56 +3.2
1,234,446 + CSW01_05895 0.71 -1.5
1,234,474 - CSW01_05895 0.74 -0.0
1,234,482 - CSW01_05895 0.75 -0.7
1,234,482 - CSW01_05895 0.75 +0.0
1,234,482 - CSW01_05895 0.75 -1.5
1,234,616 - CSW01_05895 0.88 -0.5
1,234,623 + CSW01_05895 0.89 -0.9
1,234,623 + CSW01_05895 0.89 +1.2
1,234,623 + CSW01_05895 0.89 +0.1
1,234,660 + +1.2
1,234,709 - -2.3
1,234,742 + -1.8
1,235,234 + CSW01_05900 0.54 -0.1
1,235,237 - CSW01_05900 0.55 +0.1
1,235,265 - CSW01_05900 0.58 -1.8
1,235,265 - CSW01_05900 0.58 +1.4
1,235,265 - CSW01_05900 0.58 +1.0
1,235,475 - CSW01_05900 0.87 +0.4
1,235,504 + +0.2
1,235,504 + -0.5
1,235,512 - -3.2
1,235,574 + +0.2
1,235,574 + +0.4
1,235,580 - +0.9
1,235,719 + -0.0
1,235,728 + +0.1
1,235,736 - -0.2
1,235,757 - -0.6
1,235,764 + -0.1
1,235,964 - CSW01_05905 0.30 -0.2
1,235,986 - CSW01_05905 0.32 -0.1
1,236,024 + CSW01_05905 0.37 +2.8
1,236,024 + CSW01_05905 0.37 +0.4
1,236,032 - CSW01_05905 0.38 -0.0
1,236,032 - CSW01_05905 0.38 +0.0
1,236,056 + CSW01_05905 0.40 -0.4
1,236,064 - CSW01_05905 0.41 -1.0
1,236,064 - CSW01_05905 0.41 +0.6
1,236,148 + CSW01_05905 0.51 -3.1
1,236,148 + CSW01_05905 0.51 +1.3
1,236,148 + CSW01_05905 0.51 +0.7
1,236,148 + CSW01_05905 0.51 -2.3
1,236,156 - CSW01_05905 0.52 -1.0
1,236,156 - CSW01_05905 0.52 +0.4
1,236,156 - CSW01_05905 0.52 +0.6
1,236,156 - CSW01_05905 0.52 -0.2
1,236,301 + CSW01_05905 0.69 +0.6
1,236,301 + CSW01_05905 0.69 +0.6
1,236,303 + CSW01_05905 0.69 +0.2
1,236,309 - CSW01_05905 0.69 +0.4
1,236,347 - CSW01_05905 0.74 -0.0
1,236,349 + CSW01_05905 0.74 -0.8
1,236,349 + CSW01_05905 0.74 -0.4
1,236,349 + CSW01_05905 0.74 +0.8
1,236,349 + CSW01_05905 0.74 -1.2
1,236,357 - CSW01_05905 0.75 +1.6
1,236,357 - CSW01_05905 0.75 +0.4
1,236,357 - CSW01_05905 0.75 -0.1
1,236,357 - CSW01_05905 0.75 +1.0
1,236,357 - CSW01_05905 0.75 +1.0
1,236,357 - CSW01_05905 0.75 -3.1
1,236,357 - CSW01_05905 0.75 +0.5
1,236,357 - CSW01_05905 0.75 +0.2
1,236,357 - CSW01_05905 0.75 +0.7
1,236,364 - CSW01_05905 0.76 +2.9
1,236,397 + CSW01_05905 0.80 -0.9
1,236,397 + CSW01_05905 0.80 +1.0
1,236,397 + CSW01_05905 0.80 +0.3
1,236,400 - CSW01_05905 0.80 -0.5
1,236,402 + CSW01_05905 0.80 +0.2
1,236,405 - CSW01_05905 0.80 +0.5
1,236,405 - CSW01_05905 0.80 +0.3
1,236,405 - CSW01_05905 0.80 -0.0
1,236,410 - CSW01_05905 0.81 +0.4
1,236,440 - CSW01_05905 0.84 +0.3
1,236,445 - CSW01_05905 0.85 +0.2
1,236,476 + CSW01_05905 0.89 -2.3
1,236,478 + CSW01_05905 0.89 -0.0
1,236,484 - CSW01_05905 0.90 -1.2
1,236,486 - CSW01_05905 0.90 -0.3
1,236,486 - CSW01_05905 0.90 +1.0
1,236,525 - -0.3
1,236,533 - -0.3
1,236,538 + +0.4
1,236,538 + -2.7
1,236,538 + -2.3
1,236,538 + -1.0
1,236,538 + -0.5
1,236,546 - -0.7
1,236,546 - +1.2
1,236,546 - -1.4
1,236,546 - +2.0
1,236,546 - -0.6
1,236,546 - +1.1

Or see this region's nucleotide sequence