Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04740

Experiment: LB_Anaerobic_60MIN_ZN4B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_04730 and CSW01_04735 are separated by 10 nucleotidesCSW01_04735 and CSW01_04740 overlap by 1 nucleotidesCSW01_04740 and CSW01_04745 overlap by 25 nucleotides CSW01_04730: CSW01_04730 - hypothetical protein, at 983,674 to 984,894 _04730 CSW01_04735: CSW01_04735 - serine acetyltransferase, at 984,905 to 985,336 _04735 CSW01_04740: CSW01_04740 - capsule biosynthesis protein CapK, at 985,336 to 986,676 _04740 CSW01_04745: CSW01_04745 - glycosyltransferase family 1 protein, at 986,652 to 987,749 _04745 Position (kb) 985 986 987Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 984.415 kb on + strand, within CSW01_04730at 984.470 kb on + strand, within CSW01_04730at 984.471 kb on + strand, within CSW01_04730at 984.472 kb on + strand, within CSW01_04730at 984.478 kb on - strand, within CSW01_04730at 984.479 kb on - strand, within CSW01_04730at 984.479 kb on - strand, within CSW01_04730at 984.479 kb on - strand, within CSW01_04730at 984.479 kb on - strand, within CSW01_04730at 984.490 kb on - strand, within CSW01_04730at 984.555 kb on + strand, within CSW01_04730at 984.555 kb on + strand, within CSW01_04730at 984.555 kb on + strand, within CSW01_04730at 984.555 kb on + strand, within CSW01_04730at 984.563 kb on - strand, within CSW01_04730at 984.570 kb on - strand, within CSW01_04730at 984.576 kb on + strand, within CSW01_04730at 984.576 kb on + strand, within CSW01_04730at 984.666 kb on - strand, within CSW01_04730at 984.666 kb on - strand, within CSW01_04730at 984.689 kb on + strand, within CSW01_04730at 984.689 kb on + strand, within CSW01_04730at 984.689 kb on + strand, within CSW01_04730at 984.689 kb on + strand, within CSW01_04730at 984.697 kb on - strand, within CSW01_04730at 984.697 kb on - strand, within CSW01_04730at 984.704 kb on + strand, within CSW01_04730at 984.710 kb on - strand, within CSW01_04730at 984.712 kb on + strand, within CSW01_04730at 984.712 kb on + strand, within CSW01_04730at 984.712 kb on + strand, within CSW01_04730at 984.712 kb on + strand, within CSW01_04730at 984.712 kb on + strand, within CSW01_04730at 984.712 kb on + strand, within CSW01_04730at 984.712 kb on + strand, within CSW01_04730at 984.712 kb on + strand, within CSW01_04730at 984.720 kb on - strand, within CSW01_04730at 984.720 kb on - strand, within CSW01_04730at 984.720 kb on - strand, within CSW01_04730at 984.720 kb on - strand, within CSW01_04730at 984.720 kb on - strand, within CSW01_04730at 984.720 kb on - strand, within CSW01_04730at 984.767 kb on + strand, within CSW01_04730at 984.775 kb on - strandat 984.786 kb on + strandat 984.812 kb on + strandat 984.812 kb on + strandat 984.887 kb on + strandat 984.943 kb on + strandat 984.965 kb on - strand, within CSW01_04735at 984.975 kb on - strand, within CSW01_04735at 984.994 kb on + strand, within CSW01_04735at 985.032 kb on + strand, within CSW01_04735at 985.037 kb on + strand, within CSW01_04735at 985.037 kb on + strand, within CSW01_04735at 985.115 kb on - strand, within CSW01_04735at 985.121 kb on + strand, within CSW01_04735at 985.154 kb on - strand, within CSW01_04735at 985.156 kb on - strand, within CSW01_04735at 985.156 kb on - strand, within CSW01_04735at 985.194 kb on - strand, within CSW01_04735at 985.223 kb on + strand, within CSW01_04735at 985.252 kb on - strand, within CSW01_04735at 985.300 kb on + strandat 985.572 kb on + strand, within CSW01_04740at 985.572 kb on + strand, within CSW01_04740at 985.572 kb on + strand, within CSW01_04740at 985.702 kb on + strand, within CSW01_04740at 985.702 kb on + strand, within CSW01_04740at 985.789 kb on + strand, within CSW01_04740at 985.791 kb on + strand, within CSW01_04740at 985.799 kb on - strand, within CSW01_04740at 985.809 kb on - strand, within CSW01_04740at 985.814 kb on + strand, within CSW01_04740at 985.814 kb on + strand, within CSW01_04740at 985.863 kb on + strand, within CSW01_04740at 985.870 kb on - strand, within CSW01_04740at 985.878 kb on + strand, within CSW01_04740at 985.885 kb on + strand, within CSW01_04740at 985.968 kb on + strand, within CSW01_04740at 985.968 kb on + strand, within CSW01_04740at 985.968 kb on + strand, within CSW01_04740at 986.003 kb on + strand, within CSW01_04740at 986.011 kb on - strand, within CSW01_04740at 986.045 kb on - strand, within CSW01_04740at 986.116 kb on + strand, within CSW01_04740at 986.126 kb on + strand, within CSW01_04740at 986.167 kb on + strand, within CSW01_04740at 986.171 kb on - strand, within CSW01_04740at 986.203 kb on - strand, within CSW01_04740at 986.252 kb on - strand, within CSW01_04740at 986.395 kb on + strand, within CSW01_04740at 986.427 kb on + strand, within CSW01_04740at 986.458 kb on - strand, within CSW01_04740at 986.475 kb on + strand, within CSW01_04740at 986.485 kb on + strand, within CSW01_04740at 986.560 kb on + strandat 986.614 kb on + strandat 986.673 kb on - strandat 986.715 kb on + strandat 986.715 kb on + strandat 986.715 kb on + strandat 986.723 kb on - strandat 986.739 kb on + strandat 986.746 kb on - strandat 986.747 kb on - strandat 986.798 kb on + strand, within CSW01_04745at 986.813 kb on - strand, within CSW01_04745at 986.813 kb on - strand, within CSW01_04745at 986.813 kb on - strand, within CSW01_04745at 987.052 kb on + strand, within CSW01_04745at 987.136 kb on + strand, within CSW01_04745at 987.144 kb on - strand, within CSW01_04745at 987.161 kb on + strand, within CSW01_04745at 987.161 kb on + strand, within CSW01_04745at 987.161 kb on + strand, within CSW01_04745at 987.161 kb on + strand, within CSW01_04745at 987.161 kb on + strand, within CSW01_04745at 987.161 kb on + strand, within CSW01_04745at 987.161 kb on + strand, within CSW01_04745at 987.161 kb on + strand, within CSW01_04745at 987.161 kb on + strand, within CSW01_04745at 987.161 kb on + strand, within CSW01_04745at 987.164 kb on - strand, within CSW01_04745at 987.169 kb on - strand, within CSW01_04745at 987.169 kb on - strand, within CSW01_04745at 987.169 kb on - strand, within CSW01_04745at 987.169 kb on - strand, within CSW01_04745at 987.169 kb on - strand, within CSW01_04745at 987.169 kb on - strand, within CSW01_04745at 987.169 kb on - strand, within CSW01_04745at 987.242 kb on + strand, within CSW01_04745at 987.242 kb on + strand, within CSW01_04745at 987.272 kb on - strand, within CSW01_04745at 987.295 kb on + strand, within CSW01_04745at 987.303 kb on - strand, within CSW01_04745at 987.303 kb on - strand, within CSW01_04745at 987.308 kb on + strand, within CSW01_04745at 987.365 kb on - strand, within CSW01_04745at 987.561 kb on + strand, within CSW01_04745at 987.561 kb on + strand, within CSW01_04745

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_60MIN_ZN4B
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984,415 + CSW01_04730 0.61 -0.2
984,470 + CSW01_04730 0.65 +0.2
984,471 + CSW01_04730 0.65 +0.0
984,472 + CSW01_04730 0.65 -1.8
984,478 - CSW01_04730 0.66 -0.2
984,479 - CSW01_04730 0.66 +0.6
984,479 - CSW01_04730 0.66 -1.5
984,479 - CSW01_04730 0.66 -0.9
984,479 - CSW01_04730 0.66 -0.1
984,490 - CSW01_04730 0.67 +0.4
984,555 + CSW01_04730 0.72 -0.2
984,555 + CSW01_04730 0.72 +1.3
984,555 + CSW01_04730 0.72 -0.4
984,555 + CSW01_04730 0.72 -0.1
984,563 - CSW01_04730 0.73 +0.4
984,570 - CSW01_04730 0.73 +1.1
984,576 + CSW01_04730 0.74 +0.5
984,576 + CSW01_04730 0.74 -0.2
984,666 - CSW01_04730 0.81 -0.6
984,666 - CSW01_04730 0.81 -1.2
984,689 + CSW01_04730 0.83 +0.1
984,689 + CSW01_04730 0.83 +1.5
984,689 + CSW01_04730 0.83 +0.2
984,689 + CSW01_04730 0.83 -1.2
984,697 - CSW01_04730 0.84 -0.2
984,697 - CSW01_04730 0.84 -0.2
984,704 + CSW01_04730 0.84 +1.4
984,710 - CSW01_04730 0.85 -0.2
984,712 + CSW01_04730 0.85 +0.5
984,712 + CSW01_04730 0.85 -2.1
984,712 + CSW01_04730 0.85 -0.3
984,712 + CSW01_04730 0.85 +0.4
984,712 + CSW01_04730 0.85 +0.4
984,712 + CSW01_04730 0.85 +1.1
984,712 + CSW01_04730 0.85 -3.9
984,712 + CSW01_04730 0.85 +1.4
984,720 - CSW01_04730 0.86 -0.9
984,720 - CSW01_04730 0.86 -0.3
984,720 - CSW01_04730 0.86 -0.5
984,720 - CSW01_04730 0.86 +0.0
984,720 - CSW01_04730 0.86 +0.4
984,720 - CSW01_04730 0.86 +0.5
984,767 + CSW01_04730 0.90 +1.2
984,775 - -0.4
984,786 + -0.5
984,812 + +2.4
984,812 + +0.3
984,887 + -0.2
984,943 + +0.2
984,965 - CSW01_04735 0.14 -0.3
984,975 - CSW01_04735 0.16 -0.2
984,994 + CSW01_04735 0.21 +1.5
985,032 + CSW01_04735 0.29 +1.0
985,037 + CSW01_04735 0.31 +0.4
985,037 + CSW01_04735 0.31 +0.1
985,115 - CSW01_04735 0.49 +0.5
985,121 + CSW01_04735 0.50 +0.3
985,154 - CSW01_04735 0.58 -0.5
985,156 - CSW01_04735 0.58 -0.2
985,156 - CSW01_04735 0.58 +0.7
985,194 - CSW01_04735 0.67 +0.0
985,223 + CSW01_04735 0.74 -0.0
985,252 - CSW01_04735 0.80 -0.1
985,300 + +0.1
985,572 + CSW01_04740 0.18 +0.0
985,572 + CSW01_04740 0.18 -0.6
985,572 + CSW01_04740 0.18 -0.1
985,702 + CSW01_04740 0.27 -1.0
985,702 + CSW01_04740 0.27 +0.8
985,789 + CSW01_04740 0.34 +1.0
985,791 + CSW01_04740 0.34 +0.1
985,799 - CSW01_04740 0.35 +1.7
985,809 - CSW01_04740 0.35 +0.8
985,814 + CSW01_04740 0.36 +0.7
985,814 + CSW01_04740 0.36 +0.7
985,863 + CSW01_04740 0.39 -0.5
985,870 - CSW01_04740 0.40 +1.6
985,878 + CSW01_04740 0.40 +0.8
985,885 + CSW01_04740 0.41 -1.2
985,968 + CSW01_04740 0.47 -0.8
985,968 + CSW01_04740 0.47 +0.1
985,968 + CSW01_04740 0.47 +2.2
986,003 + CSW01_04740 0.50 +1.0
986,011 - CSW01_04740 0.50 -1.0
986,045 - CSW01_04740 0.53 +0.4
986,116 + CSW01_04740 0.58 +1.1
986,126 + CSW01_04740 0.59 +0.7
986,167 + CSW01_04740 0.62 -0.0
986,171 - CSW01_04740 0.62 +2.4
986,203 - CSW01_04740 0.65 -0.8
986,252 - CSW01_04740 0.68 -1.4
986,395 + CSW01_04740 0.79 +0.7
986,427 + CSW01_04740 0.81 +2.7
986,458 - CSW01_04740 0.84 -0.1
986,475 + CSW01_04740 0.85 +0.2
986,485 + CSW01_04740 0.86 -0.0
986,560 + -0.4
986,614 + -2.2
986,673 - -0.0
986,715 + -1.0
986,715 + -0.7
986,715 + -0.5
986,723 - +0.2
986,739 + -0.3
986,746 - -0.2
986,747 - -0.6
986,798 + CSW01_04745 0.13 -1.4
986,813 - CSW01_04745 0.15 -1.2
986,813 - CSW01_04745 0.15 -2.1
986,813 - CSW01_04745 0.15 +0.9
987,052 + CSW01_04745 0.36 +1.3
987,136 + CSW01_04745 0.44 -0.3
987,144 - CSW01_04745 0.45 -1.8
987,161 + CSW01_04745 0.46 -1.1
987,161 + CSW01_04745 0.46 +0.1
987,161 + CSW01_04745 0.46 +0.1
987,161 + CSW01_04745 0.46 -0.5
987,161 + CSW01_04745 0.46 +1.2
987,161 + CSW01_04745 0.46 +0.0
987,161 + CSW01_04745 0.46 +0.1
987,161 + CSW01_04745 0.46 +0.2
987,161 + CSW01_04745 0.46 +0.5
987,161 + CSW01_04745 0.46 -0.8
987,164 - CSW01_04745 0.47 -0.5
987,169 - CSW01_04745 0.47 +0.5
987,169 - CSW01_04745 0.47 +0.0
987,169 - CSW01_04745 0.47 +0.2
987,169 - CSW01_04745 0.47 -2.8
987,169 - CSW01_04745 0.47 +1.0
987,169 - CSW01_04745 0.47 +0.1
987,169 - CSW01_04745 0.47 +0.3
987,242 + CSW01_04745 0.54 -0.0
987,242 + CSW01_04745 0.54 -0.5
987,272 - CSW01_04745 0.56 -1.6
987,295 + CSW01_04745 0.59 +1.2
987,303 - CSW01_04745 0.59 -0.2
987,303 - CSW01_04745 0.59 -3.8
987,308 + CSW01_04745 0.60 -0.0
987,365 - CSW01_04745 0.65 +0.0
987,561 + CSW01_04745 0.83 +1.0
987,561 + CSW01_04745 0.83 +0.6

Or see this region's nucleotide sequence