Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04130

Experiment: LB_Anaerobic_60MIN_ZN4B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_04120 and CSW01_04125 overlap by 19 nucleotidesCSW01_04125 and CSW01_04130 are separated by 10 nucleotidesCSW01_04130 and CSW01_04135 overlap by 4 nucleotidesCSW01_04135 and CSW01_04140 overlap by 23 nucleotides CSW01_04120: CSW01_04120 - citrate lyase ACP, at 853,024 to 853,320 _04120 CSW01_04125: CSW01_04125 - citrate (pro-3S)-lyase subunit beta, at 853,302 to 854,192 _04125 CSW01_04130: CSW01_04130 - citrate lyase subunit alpha, at 854,203 to 855,732 _04130 CSW01_04135: CSW01_04135 - apo-citrate lyase phosphoribosyl-dephospho-CoA transferase, at 855,729 to 856,265 _04135 CSW01_04140: CSW01_04140 - triphosphoribosyl-dephospho-CoA synthase, at 856,243 to 857,184 _04140 Position (kb) 854 855 856Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 853.212 kb on - strand, within CSW01_04120at 853.221 kb on + strand, within CSW01_04120at 853.229 kb on - strand, within CSW01_04120at 853.257 kb on + strand, within CSW01_04120at 853.263 kb on - strand, within CSW01_04120at 853.288 kb on + strand, within CSW01_04120at 853.296 kb on - strandat 853.460 kb on - strand, within CSW01_04125at 853.465 kb on - strand, within CSW01_04125at 853.466 kb on + strand, within CSW01_04125at 853.466 kb on + strand, within CSW01_04125at 853.476 kb on + strand, within CSW01_04125at 853.553 kb on + strand, within CSW01_04125at 853.553 kb on + strand, within CSW01_04125at 853.561 kb on - strand, within CSW01_04125at 853.561 kb on - strand, within CSW01_04125at 853.576 kb on - strand, within CSW01_04125at 853.649 kb on + strand, within CSW01_04125at 853.671 kb on + strand, within CSW01_04125at 853.671 kb on + strand, within CSW01_04125at 853.674 kb on - strand, within CSW01_04125at 853.676 kb on - strand, within CSW01_04125at 853.700 kb on + strand, within CSW01_04125at 853.708 kb on + strand, within CSW01_04125at 853.724 kb on - strand, within CSW01_04125at 853.740 kb on + strand, within CSW01_04125at 853.743 kb on - strand, within CSW01_04125at 853.754 kb on - strand, within CSW01_04125at 853.811 kb on + strand, within CSW01_04125at 853.811 kb on + strand, within CSW01_04125at 853.819 kb on - strand, within CSW01_04125at 853.825 kb on + strand, within CSW01_04125at 853.833 kb on - strand, within CSW01_04125at 853.849 kb on + strand, within CSW01_04125at 853.849 kb on + strand, within CSW01_04125at 853.849 kb on + strand, within CSW01_04125at 853.857 kb on - strand, within CSW01_04125at 853.857 kb on - strand, within CSW01_04125at 853.889 kb on + strand, within CSW01_04125at 853.911 kb on - strand, within CSW01_04125at 853.956 kb on - strand, within CSW01_04125at 853.957 kb on - strand, within CSW01_04125at 853.958 kb on + strand, within CSW01_04125at 854.004 kb on + strand, within CSW01_04125at 854.004 kb on + strand, within CSW01_04125at 854.099 kb on - strand, within CSW01_04125at 854.205 kb on - strandat 854.220 kb on + strandat 854.253 kb on - strandat 854.266 kb on - strandat 854.339 kb on + strandat 854.483 kb on + strand, within CSW01_04130at 854.483 kb on + strand, within CSW01_04130at 854.483 kb on + strand, within CSW01_04130at 854.483 kb on + strand, within CSW01_04130at 854.491 kb on - strand, within CSW01_04130at 854.491 kb on - strand, within CSW01_04130at 854.491 kb on - strand, within CSW01_04130at 854.550 kb on + strand, within CSW01_04130at 854.550 kb on + strand, within CSW01_04130at 854.565 kb on + strand, within CSW01_04130at 854.566 kb on - strand, within CSW01_04130at 854.588 kb on - strand, within CSW01_04130at 854.594 kb on + strand, within CSW01_04130at 854.617 kb on + strand, within CSW01_04130at 854.660 kb on + strand, within CSW01_04130at 854.668 kb on - strand, within CSW01_04130at 854.675 kb on - strand, within CSW01_04130at 854.729 kb on - strand, within CSW01_04130at 854.742 kb on + strand, within CSW01_04130at 854.750 kb on - strand, within CSW01_04130at 854.967 kb on - strand, within CSW01_04130at 855.033 kb on - strand, within CSW01_04130at 855.095 kb on - strand, within CSW01_04130at 855.114 kb on - strand, within CSW01_04130at 855.252 kb on - strand, within CSW01_04130at 855.327 kb on + strand, within CSW01_04130at 855.358 kb on - strand, within CSW01_04130at 855.359 kb on + strand, within CSW01_04130at 855.393 kb on - strand, within CSW01_04130at 855.430 kb on + strand, within CSW01_04130at 855.455 kb on - strand, within CSW01_04130at 855.485 kb on - strand, within CSW01_04130at 855.517 kb on + strand, within CSW01_04130at 855.517 kb on + strand, within CSW01_04130at 855.525 kb on - strand, within CSW01_04130at 855.717 kb on + strandat 855.725 kb on + strandat 855.733 kb on - strandat 855.757 kb on + strandat 855.757 kb on + strandat 855.757 kb on + strandat 855.757 kb on + strandat 855.757 kb on + strandat 855.757 kb on + strandat 855.757 kb on + strandat 855.757 kb on + strandat 855.765 kb on - strandat 855.776 kb on + strandat 855.875 kb on - strand, within CSW01_04135at 855.880 kb on - strand, within CSW01_04135at 855.927 kb on - strand, within CSW01_04135at 856.129 kb on - strand, within CSW01_04135at 856.136 kb on - strand, within CSW01_04135at 856.168 kb on - strand, within CSW01_04135at 856.178 kb on + strand, within CSW01_04135at 856.186 kb on - strand, within CSW01_04135at 856.207 kb on - strand, within CSW01_04135at 856.212 kb on - strandat 856.212 kb on - strandat 856.212 kb on - strandat 856.272 kb on + strandat 856.285 kb on + strandat 856.314 kb on - strandat 856.357 kb on + strand, within CSW01_04140at 856.360 kb on - strand, within CSW01_04140at 856.364 kb on + strand, within CSW01_04140at 856.445 kb on + strand, within CSW01_04140at 856.480 kb on - strand, within CSW01_04140at 856.509 kb on - strand, within CSW01_04140at 856.509 kb on - strand, within CSW01_04140at 856.544 kb on + strand, within CSW01_04140at 856.573 kb on - strand, within CSW01_04140at 856.599 kb on + strand, within CSW01_04140at 856.600 kb on - strand, within CSW01_04140at 856.667 kb on - strand, within CSW01_04140at 856.674 kb on + strand, within CSW01_04140at 856.692 kb on + strand, within CSW01_04140at 856.692 kb on + strand, within CSW01_04140

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_60MIN_ZN4B
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853,212 - CSW01_04120 0.63 +0.5
853,221 + CSW01_04120 0.66 -0.6
853,229 - CSW01_04120 0.69 +1.1
853,257 + CSW01_04120 0.78 -0.6
853,263 - CSW01_04120 0.80 -1.8
853,288 + CSW01_04120 0.89 +1.7
853,296 - -1.0
853,460 - CSW01_04125 0.18 -0.0
853,465 - CSW01_04125 0.18 -0.8
853,466 + CSW01_04125 0.18 -1.9
853,466 + CSW01_04125 0.18 -0.6
853,476 + CSW01_04125 0.20 +0.6
853,553 + CSW01_04125 0.28 -0.0
853,553 + CSW01_04125 0.28 +0.5
853,561 - CSW01_04125 0.29 -0.2
853,561 - CSW01_04125 0.29 +0.4
853,576 - CSW01_04125 0.31 -0.9
853,649 + CSW01_04125 0.39 +0.6
853,671 + CSW01_04125 0.41 +0.8
853,671 + CSW01_04125 0.41 +0.8
853,674 - CSW01_04125 0.42 +0.4
853,676 - CSW01_04125 0.42 +0.5
853,700 + CSW01_04125 0.45 +0.5
853,708 + CSW01_04125 0.46 +0.3
853,724 - CSW01_04125 0.47 -1.2
853,740 + CSW01_04125 0.49 -0.5
853,743 - CSW01_04125 0.49 +0.3
853,754 - CSW01_04125 0.51 +1.0
853,811 + CSW01_04125 0.57 -0.6
853,811 + CSW01_04125 0.57 +0.2
853,819 - CSW01_04125 0.58 +0.2
853,825 + CSW01_04125 0.59 +1.1
853,833 - CSW01_04125 0.60 +0.2
853,849 + CSW01_04125 0.61 -2.5
853,849 + CSW01_04125 0.61 +1.0
853,849 + CSW01_04125 0.61 +0.7
853,857 - CSW01_04125 0.62 +1.0
853,857 - CSW01_04125 0.62 -2.2
853,889 + CSW01_04125 0.66 +0.8
853,911 - CSW01_04125 0.68 -0.2
853,956 - CSW01_04125 0.73 +1.6
853,957 - CSW01_04125 0.74 -0.1
853,958 + CSW01_04125 0.74 -0.5
854,004 + CSW01_04125 0.79 +0.4
854,004 + CSW01_04125 0.79 +0.7
854,099 - CSW01_04125 0.89 -0.7
854,205 - -0.1
854,220 + -0.2
854,253 - -1.9
854,266 - +0.5
854,339 + -0.2
854,483 + CSW01_04130 0.18 -0.3
854,483 + CSW01_04130 0.18 -1.5
854,483 + CSW01_04130 0.18 +1.1
854,483 + CSW01_04130 0.18 +0.0
854,491 - CSW01_04130 0.19 -0.6
854,491 - CSW01_04130 0.19 +0.3
854,491 - CSW01_04130 0.19 +0.7
854,550 + CSW01_04130 0.23 -2.0
854,550 + CSW01_04130 0.23 -1.1
854,565 + CSW01_04130 0.24 -0.4
854,566 - CSW01_04130 0.24 -2.9
854,588 - CSW01_04130 0.25 +0.0
854,594 + CSW01_04130 0.26 +0.3
854,617 + CSW01_04130 0.27 -1.6
854,660 + CSW01_04130 0.30 +0.1
854,668 - CSW01_04130 0.30 -0.8
854,675 - CSW01_04130 0.31 -1.0
854,729 - CSW01_04130 0.34 -1.2
854,742 + CSW01_04130 0.35 -0.3
854,750 - CSW01_04130 0.36 +0.3
854,967 - CSW01_04130 0.50 -1.0
855,033 - CSW01_04130 0.54 -0.3
855,095 - CSW01_04130 0.58 -0.5
855,114 - CSW01_04130 0.60 +0.1
855,252 - CSW01_04130 0.69 +0.4
855,327 + CSW01_04130 0.73 -1.4
855,358 - CSW01_04130 0.75 +0.0
855,359 + CSW01_04130 0.76 +0.2
855,393 - CSW01_04130 0.78 +0.8
855,430 + CSW01_04130 0.80 -0.8
855,455 - CSW01_04130 0.82 -2.9
855,485 - CSW01_04130 0.84 -0.7
855,517 + CSW01_04130 0.86 -0.6
855,517 + CSW01_04130 0.86 -0.6
855,525 - CSW01_04130 0.86 -2.2
855,717 + +0.3
855,725 + -0.8
855,733 - +0.5
855,757 + -0.0
855,757 + -1.7
855,757 + -0.0
855,757 + -0.0
855,757 + +0.0
855,757 + -0.4
855,757 + +0.6
855,757 + +0.1
855,765 - +0.1
855,776 + -1.0
855,875 - CSW01_04135 0.27 +1.5
855,880 - CSW01_04135 0.28 -0.4
855,927 - CSW01_04135 0.37 +1.0
856,129 - CSW01_04135 0.74 +0.7
856,136 - CSW01_04135 0.76 +0.1
856,168 - CSW01_04135 0.82 +0.9
856,178 + CSW01_04135 0.84 +0.6
856,186 - CSW01_04135 0.85 +3.2
856,207 - CSW01_04135 0.89 +2.0
856,212 - -0.1
856,212 - +3.9
856,212 - +0.4
856,272 + +0.0
856,285 + +0.3
856,314 - +0.7
856,357 + CSW01_04140 0.12 +0.7
856,360 - CSW01_04140 0.12 +1.5
856,364 + CSW01_04140 0.13 +0.8
856,445 + CSW01_04140 0.21 +1.2
856,480 - CSW01_04140 0.25 -0.1
856,509 - CSW01_04140 0.28 +0.6
856,509 - CSW01_04140 0.28 -0.6
856,544 + CSW01_04140 0.32 +0.2
856,573 - CSW01_04140 0.35 +0.2
856,599 + CSW01_04140 0.38 -0.1
856,600 - CSW01_04140 0.38 +0.6
856,667 - CSW01_04140 0.45 -0.7
856,674 + CSW01_04140 0.46 +1.2
856,692 + CSW01_04140 0.48 +0.2
856,692 + CSW01_04140 0.48 +0.6

Or see this region's nucleotide sequence