Experiment: LB_Anaerobic_60MIN_ZN4B
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_03735 and CSW01_03740 are separated by 9 nucleotides CSW01_03740 and CSW01_03745 are separated by 34 nucleotides CSW01_03745 and CSW01_03750 are separated by 2 nucleotides
CSW01_03735: CSW01_03735 - DUF1904 domain-containing protein, at 766,964 to 767,287
_03735
CSW01_03740: CSW01_03740 - oxygen-insensitive NADPH nitroreductase, at 767,297 to 768,019
_03740
CSW01_03745: CSW01_03745 - ferredoxin, at 768,054 to 768,308
_03745
CSW01_03750: CSW01_03750 - U32 family peptidase, at 768,311 to 769,711
_03750
Position (kb) 768
769 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 767.055 kb on - strand, within CSW01_03735 at 767.055 kb on - strand, within CSW01_03735 at 767.091 kb on - strand, within CSW01_03735 at 767.179 kb on + strand, within CSW01_03735 at 767.224 kb on - strand, within CSW01_03735 at 767.236 kb on + strand, within CSW01_03735 at 767.236 kb on + strand, within CSW01_03735 at 767.244 kb on - strand, within CSW01_03735 at 767.244 kb on - strand, within CSW01_03735 at 767.244 kb on - strand, within CSW01_03735 at 767.251 kb on - strand, within CSW01_03735 at 767.291 kb on + strand at 767.572 kb on + strand, within CSW01_03740 at 767.663 kb on + strand, within CSW01_03740 at 767.671 kb on - strand, within CSW01_03740 at 767.747 kb on + strand, within CSW01_03740 at 767.921 kb on + strand, within CSW01_03740 at 768.008 kb on + strand at 768.027 kb on + strand at 768.253 kb on - strand, within CSW01_03745 at 768.255 kb on - strand, within CSW01_03745 at 768.351 kb on + strand at 768.365 kb on - strand at 768.377 kb on - strand at 768.379 kb on + strand at 768.382 kb on - strand at 768.677 kb on + strand, within CSW01_03750 at 768.685 kb on + strand, within CSW01_03750 at 768.832 kb on - strand, within CSW01_03750 at 768.832 kb on - strand, within CSW01_03750 at 768.845 kb on + strand, within CSW01_03750 at 768.854 kb on + strand, within CSW01_03750 at 768.862 kb on - strand, within CSW01_03750 at 768.995 kb on + strand, within CSW01_03750 at 769.022 kb on + strand, within CSW01_03750 at 769.038 kb on + strand, within CSW01_03750 at 769.046 kb on - strand, within CSW01_03750 at 769.046 kb on - strand, within CSW01_03750 at 769.048 kb on + strand, within CSW01_03750 at 769.055 kb on + strand, within CSW01_03750 at 769.190 kb on - strand, within CSW01_03750 at 769.218 kb on - strand, within CSW01_03750
Per-strain Table
Position Strand Gene LocusTag Fraction LB_Anaerobic_60MIN_ZN4B remove 767,055 - CSW01_03735 0.28 +0.3 767,055 - CSW01_03735 0.28 -0.7 767,091 - CSW01_03735 0.39 -0.0 767,179 + CSW01_03735 0.66 -2.4 767,224 - CSW01_03735 0.80 -0.1 767,236 + CSW01_03735 0.84 +2.6 767,236 + CSW01_03735 0.84 +0.0 767,244 - CSW01_03735 0.86 -0.7 767,244 - CSW01_03735 0.86 -0.5 767,244 - CSW01_03735 0.86 -0.2 767,251 - CSW01_03735 0.89 +0.1 767,291 + +2.3 767,572 + CSW01_03740 0.38 +0.4 767,663 + CSW01_03740 0.51 -0.1 767,671 - CSW01_03740 0.52 +0.9 767,747 + CSW01_03740 0.62 +0.7 767,921 + CSW01_03740 0.86 -0.2 768,008 + -0.8 768,027 + +0.8 768,253 - CSW01_03745 0.78 -0.6 768,255 - CSW01_03745 0.79 -0.5 768,351 + +0.0 768,365 - +0.4 768,377 - +0.5 768,379 + +0.6 768,382 - -0.8 768,677 + CSW01_03750 0.26 -0.6 768,685 + CSW01_03750 0.27 -0.6 768,832 - CSW01_03750 0.37 -0.5 768,832 - CSW01_03750 0.37 +1.6 768,845 + CSW01_03750 0.38 -0.1 768,854 + CSW01_03750 0.39 +1.2 768,862 - CSW01_03750 0.39 -0.7 768,995 + CSW01_03750 0.49 -0.7 769,022 + CSW01_03750 0.51 +0.2 769,038 + CSW01_03750 0.52 -3.0 769,046 - CSW01_03750 0.52 -2.1 769,046 - CSW01_03750 0.52 +1.4 769,048 + CSW01_03750 0.53 +2.2 769,055 + CSW01_03750 0.53 -1.9 769,190 - CSW01_03750 0.63 -2.2 769,218 - CSW01_03750 0.65 +0.2
Or see this region's nucleotide sequence