Experiment: LB_Anaerobic_60MIN_ZN4B
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_03680 and CSW01_03685 are separated by 239 nucleotides CSW01_03685 and CSW01_03690 are separated by 401 nucleotides CSW01_03690 and CSW01_03695 are separated by 154 nucleotides
CSW01_03680: CSW01_03680 - bifunctional chorismate mutase/prephenate dehydratase, at 753,572 to 754,747
_03680
CSW01_03685: CSW01_03685 - ribosomal subunit interface protein, at 754,987 to 755,313
_03685
CSW01_03690: CSW01_03690 - outer membrane protein assembly factor BamD, at 755,715 to 756,440
_03690
CSW01_03695: CSW01_03695 - ribosomal large subunit pseudouridine synthase D, at 756,595 to 757,569
_03695
Position (kb) 755
756
757 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 754.774 kb on + strand at 754.924 kb on - strand at 754.927 kb on + strand at 754.927 kb on + strand at 754.935 kb on - strand at 754.935 kb on - strand at 755.015 kb on - strand at 755.084 kb on - strand, within CSW01_03685 at 755.098 kb on + strand, within CSW01_03685 at 755.098 kb on + strand, within CSW01_03685 at 755.098 kb on + strand, within CSW01_03685 at 755.106 kb on - strand, within CSW01_03685 at 755.131 kb on - strand, within CSW01_03685 at 755.268 kb on + strand, within CSW01_03685 at 755.329 kb on + strand at 755.329 kb on + strand at 755.337 kb on - strand at 755.350 kb on + strand at 755.358 kb on - strand at 755.358 kb on - strand at 755.358 kb on - strand at 755.358 kb on - strand at 755.358 kb on - strand at 755.516 kb on - strand at 755.722 kb on + strand at 755.730 kb on - strand at 756.489 kb on - strand at 756.633 kb on - strand at 756.819 kb on + strand, within CSW01_03695 at 756.819 kb on + strand, within CSW01_03695 at 756.829 kb on + strand, within CSW01_03695 at 756.834 kb on + strand, within CSW01_03695 at 756.834 kb on + strand, within CSW01_03695 at 756.914 kb on + strand, within CSW01_03695 at 756.922 kb on - strand, within CSW01_03695 at 757.032 kb on - strand, within CSW01_03695 at 757.063 kb on + strand, within CSW01_03695 at 757.071 kb on - strand, within CSW01_03695 at 757.078 kb on + strand, within CSW01_03695 at 757.086 kb on - strand, within CSW01_03695 at 757.131 kb on - strand, within CSW01_03695 at 757.164 kb on - strand, within CSW01_03695 at 757.333 kb on + strand, within CSW01_03695 at 757.333 kb on + strand, within CSW01_03695 at 757.333 kb on + strand, within CSW01_03695 at 757.341 kb on - strand, within CSW01_03695 at 757.341 kb on - strand, within CSW01_03695 at 757.341 kb on - strand, within CSW01_03695 at 757.341 kb on - strand, within CSW01_03695 at 757.429 kb on - strand, within CSW01_03695
Per-strain Table
Position Strand Gene LocusTag Fraction LB_Anaerobic_60MIN_ZN4B remove 754,774 + -0.5 754,924 - +0.2 754,927 + +0.9 754,927 + +0.3 754,935 - +0.1 754,935 - +0.3 755,015 - +0.3 755,084 - CSW01_03685 0.30 -0.6 755,098 + CSW01_03685 0.34 +0.2 755,098 + CSW01_03685 0.34 +0.8 755,098 + CSW01_03685 0.34 -1.0 755,106 - CSW01_03685 0.36 +0.2 755,131 - CSW01_03685 0.44 -0.0 755,268 + CSW01_03685 0.86 +0.5 755,329 + -0.7 755,329 + -0.2 755,337 - +0.3 755,350 + -1.0 755,358 - +0.0 755,358 - -1.9 755,358 - +1.4 755,358 - +0.4 755,358 - +1.7 755,516 - +1.1 755,722 + -1.5 755,730 - -0.2 756,489 - -0.4 756,633 - -2.0 756,819 + CSW01_03695 0.23 +0.4 756,819 + CSW01_03695 0.23 -1.4 756,829 + CSW01_03695 0.24 -0.4 756,834 + CSW01_03695 0.25 -0.4 756,834 + CSW01_03695 0.25 +0.4 756,914 + CSW01_03695 0.33 -2.2 756,922 - CSW01_03695 0.34 -0.6 757,032 - CSW01_03695 0.45 +0.4 757,063 + CSW01_03695 0.48 -2.9 757,071 - CSW01_03695 0.49 +0.3 757,078 + CSW01_03695 0.50 +0.6 757,086 - CSW01_03695 0.50 -2.9 757,131 - CSW01_03695 0.55 -0.5 757,164 - CSW01_03695 0.58 -1.2 757,333 + CSW01_03695 0.76 -1.6 757,333 + CSW01_03695 0.76 -0.3 757,333 + CSW01_03695 0.76 -2.9 757,341 - CSW01_03695 0.77 -2.8 757,341 - CSW01_03695 0.77 +0.8 757,341 - CSW01_03695 0.77 +2.1 757,341 - CSW01_03695 0.77 -0.3 757,429 - CSW01_03695 0.86 +0.4
Or see this region's nucleotide sequence