Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03525

Experiment: LB_Anaerobic_60MIN_ZN4B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03520 and CSW01_03525 are separated by 2 nucleotidesCSW01_03525 and CSW01_03530 are separated by 9 nucleotidesCSW01_03530 and CSW01_03535 are separated by 28 nucleotides CSW01_03520: CSW01_03520 - RNA pyrophosphohydrolase, at 715,824 to 716,405 _03520 CSW01_03525: CSW01_03525 - phosphoenolpyruvate-protein phosphotransferase PtsP, at 716,408 to 718,654 _03525 CSW01_03530: CSW01_03530 - sulfite exporter TauE/SafE family protein, at 718,664 to 719,458 _03530 CSW01_03535: CSW01_03535 - prolipoprotein diacylglyceryl transferase, at 719,487 to 720,302 _03535 Position (kb) 716 717 718 719Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 715.440 kb on + strandat 715.491 kb on + strandat 715.491 kb on + strandat 715.491 kb on + strandat 715.821 kb on + strandat 715.821 kb on + strandat 716.064 kb on - strand, within CSW01_03520at 716.271 kb on - strand, within CSW01_03520at 716.400 kb on + strandat 716.400 kb on + strandat 716.400 kb on + strandat 716.408 kb on - strandat 716.408 kb on - strandat 716.419 kb on + strandat 716.433 kb on - strandat 716.433 kb on - strandat 716.494 kb on - strandat 716.514 kb on - strandat 716.515 kb on + strandat 716.515 kb on + strandat 716.515 kb on + strandat 716.515 kb on + strandat 716.515 kb on + strandat 716.515 kb on + strandat 716.515 kb on + strandat 716.515 kb on + strandat 716.516 kb on - strandat 716.517 kb on + strandat 716.520 kb on + strandat 716.520 kb on + strandat 716.523 kb on - strandat 716.523 kb on - strandat 716.523 kb on - strandat 716.523 kb on - strandat 716.523 kb on - strandat 716.523 kb on - strandat 716.523 kb on - strandat 716.523 kb on - strandat 716.523 kb on - strandat 716.523 kb on - strandat 716.523 kb on - strandat 716.528 kb on - strandat 716.551 kb on - strandat 716.584 kb on + strandat 716.592 kb on - strandat 716.656 kb on + strand, within CSW01_03525at 716.656 kb on + strand, within CSW01_03525at 716.672 kb on + strand, within CSW01_03525at 716.752 kb on - strand, within CSW01_03525at 716.780 kb on - strand, within CSW01_03525at 716.834 kb on - strand, within CSW01_03525at 716.937 kb on + strand, within CSW01_03525at 716.967 kb on - strand, within CSW01_03525at 717.011 kb on + strand, within CSW01_03525at 717.014 kb on - strand, within CSW01_03525at 717.019 kb on - strand, within CSW01_03525at 717.159 kb on + strand, within CSW01_03525at 717.159 kb on + strand, within CSW01_03525at 717.159 kb on + strand, within CSW01_03525at 717.159 kb on + strand, within CSW01_03525at 717.167 kb on - strand, within CSW01_03525at 717.167 kb on - strand, within CSW01_03525at 717.167 kb on - strand, within CSW01_03525at 717.167 kb on - strand, within CSW01_03525at 717.272 kb on - strand, within CSW01_03525at 717.288 kb on - strand, within CSW01_03525at 717.421 kb on + strand, within CSW01_03525at 717.429 kb on - strand, within CSW01_03525at 717.429 kb on - strand, within CSW01_03525at 717.448 kb on - strand, within CSW01_03525at 717.464 kb on + strand, within CSW01_03525at 717.468 kb on + strand, within CSW01_03525at 717.583 kb on + strand, within CSW01_03525at 717.669 kb on - strand, within CSW01_03525at 717.685 kb on + strand, within CSW01_03525at 717.695 kb on - strand, within CSW01_03525at 717.758 kb on - strand, within CSW01_03525at 717.782 kb on + strand, within CSW01_03525at 717.782 kb on + strand, within CSW01_03525at 717.785 kb on - strand, within CSW01_03525at 717.790 kb on - strand, within CSW01_03525at 717.839 kb on - strand, within CSW01_03525at 717.842 kb on - strand, within CSW01_03525at 717.863 kb on + strand, within CSW01_03525at 717.863 kb on + strand, within CSW01_03525at 717.865 kb on + strand, within CSW01_03525at 717.871 kb on + strand, within CSW01_03525at 717.873 kb on - strand, within CSW01_03525at 717.873 kb on - strand, within CSW01_03525at 717.873 kb on - strand, within CSW01_03525at 717.873 kb on - strand, within CSW01_03525at 717.873 kb on - strand, within CSW01_03525at 717.879 kb on - strand, within CSW01_03525at 717.879 kb on - strand, within CSW01_03525at 717.925 kb on + strand, within CSW01_03525at 717.933 kb on - strand, within CSW01_03525at 717.933 kb on - strand, within CSW01_03525at 718.033 kb on + strand, within CSW01_03525at 718.044 kb on + strand, within CSW01_03525at 718.046 kb on - strand, within CSW01_03525at 718.099 kb on + strand, within CSW01_03525at 718.134 kb on + strand, within CSW01_03525at 718.208 kb on - strand, within CSW01_03525at 718.272 kb on + strand, within CSW01_03525at 718.321 kb on + strand, within CSW01_03525at 718.345 kb on + strand, within CSW01_03525at 718.347 kb on + strand, within CSW01_03525at 718.353 kb on - strand, within CSW01_03525at 718.375 kb on - strand, within CSW01_03525at 718.451 kb on + strandat 718.452 kb on + strandat 718.459 kb on - strandat 718.459 kb on - strandat 718.460 kb on - strandat 718.467 kb on + strandat 718.482 kb on + strandat 718.518 kb on + strandat 718.518 kb on + strandat 718.518 kb on + strandat 718.526 kb on - strandat 718.526 kb on - strandat 718.533 kb on + strandat 718.555 kb on + strandat 718.569 kb on - strandat 718.628 kb on - strandat 718.683 kb on - strandat 718.701 kb on + strandat 718.754 kb on - strand, within CSW01_03530at 718.763 kb on + strand, within CSW01_03530at 718.780 kb on + strand, within CSW01_03530at 718.825 kb on + strand, within CSW01_03530at 718.862 kb on - strand, within CSW01_03530at 718.868 kb on + strand, within CSW01_03530at 718.878 kb on + strand, within CSW01_03530at 718.885 kb on + strand, within CSW01_03530at 718.886 kb on - strand, within CSW01_03530at 718.946 kb on + strand, within CSW01_03530at 719.005 kb on - strand, within CSW01_03530at 719.012 kb on - strand, within CSW01_03530at 719.017 kb on + strand, within CSW01_03530at 719.017 kb on + strand, within CSW01_03530at 719.017 kb on + strand, within CSW01_03530at 719.019 kb on + strand, within CSW01_03530at 719.025 kb on - strand, within CSW01_03530at 719.030 kb on + strand, within CSW01_03530at 719.032 kb on + strand, within CSW01_03530at 719.083 kb on + strand, within CSW01_03530at 719.084 kb on - strand, within CSW01_03530at 719.116 kb on + strand, within CSW01_03530at 719.133 kb on + strand, within CSW01_03530at 719.265 kb on + strand, within CSW01_03530at 719.281 kb on - strand, within CSW01_03530at 719.281 kb on - strand, within CSW01_03530at 719.281 kb on - strand, within CSW01_03530at 719.293 kb on - strand, within CSW01_03530at 719.391 kb on + strandat 719.452 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_60MIN_ZN4B
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715,440 + -1.8
715,491 + +1.5
715,491 + +0.4
715,491 + -3.3
715,821 + -0.9
715,821 + +0.5
716,064 - CSW01_03520 0.41 -2.4
716,271 - CSW01_03520 0.77 +0.4
716,400 + +0.4
716,400 + -0.2
716,400 + +1.2
716,408 - +0.9
716,408 - -2.0
716,419 + -1.2
716,433 - +0.1
716,433 - -0.1
716,494 - -0.8
716,514 - -1.5
716,515 + -0.2
716,515 + -1.0
716,515 + +0.9
716,515 + +0.2
716,515 + +1.2
716,515 + +0.9
716,515 + +0.4
716,515 + +0.6
716,516 - +1.3
716,517 + -0.3
716,520 + -0.1
716,520 + +0.7
716,523 - -0.5
716,523 - +1.3
716,523 - +1.3
716,523 - +0.1
716,523 - +0.1
716,523 - +0.4
716,523 - +0.4
716,523 - +0.2
716,523 - -0.1
716,523 - -0.9
716,523 - -0.5
716,528 - -0.0
716,551 - -0.3
716,584 + +0.7
716,592 - -0.0
716,656 + CSW01_03525 0.11 +0.9
716,656 + CSW01_03525 0.11 +0.7
716,672 + CSW01_03525 0.12 -0.7
716,752 - CSW01_03525 0.15 -0.1
716,780 - CSW01_03525 0.17 -0.2
716,834 - CSW01_03525 0.19 +0.4
716,937 + CSW01_03525 0.24 -0.3
716,967 - CSW01_03525 0.25 +0.8
717,011 + CSW01_03525 0.27 +0.4
717,014 - CSW01_03525 0.27 +1.2
717,019 - CSW01_03525 0.27 -1.0
717,159 + CSW01_03525 0.33 +0.2
717,159 + CSW01_03525 0.33 -0.9
717,159 + CSW01_03525 0.33 -1.6
717,159 + CSW01_03525 0.33 +2.2
717,167 - CSW01_03525 0.34 +0.8
717,167 - CSW01_03525 0.34 -0.1
717,167 - CSW01_03525 0.34 -0.4
717,167 - CSW01_03525 0.34 +0.1
717,272 - CSW01_03525 0.38 -1.8
717,288 - CSW01_03525 0.39 -2.0
717,421 + CSW01_03525 0.45 +1.7
717,429 - CSW01_03525 0.45 +0.3
717,429 - CSW01_03525 0.45 -0.1
717,448 - CSW01_03525 0.46 -1.1
717,464 + CSW01_03525 0.47 -0.7
717,468 + CSW01_03525 0.47 -0.1
717,583 + CSW01_03525 0.52 +0.4
717,669 - CSW01_03525 0.56 +0.9
717,685 + CSW01_03525 0.57 -0.7
717,695 - CSW01_03525 0.57 -0.6
717,758 - CSW01_03525 0.60 -1.2
717,782 + CSW01_03525 0.61 -0.9
717,782 + CSW01_03525 0.61 -0.2
717,785 - CSW01_03525 0.61 +0.4
717,790 - CSW01_03525 0.62 +0.8
717,839 - CSW01_03525 0.64 -0.0
717,842 - CSW01_03525 0.64 +0.4
717,863 + CSW01_03525 0.65 -1.0
717,863 + CSW01_03525 0.65 -1.6
717,865 + CSW01_03525 0.65 -0.2
717,871 + CSW01_03525 0.65 -0.3
717,873 - CSW01_03525 0.65 -0.3
717,873 - CSW01_03525 0.65 +0.4
717,873 - CSW01_03525 0.65 +2.7
717,873 - CSW01_03525 0.65 -0.9
717,873 - CSW01_03525 0.65 +0.5
717,879 - CSW01_03525 0.65 +1.3
717,879 - CSW01_03525 0.65 -2.5
717,925 + CSW01_03525 0.68 -0.3
717,933 - CSW01_03525 0.68 -0.8
717,933 - CSW01_03525 0.68 -0.3
718,033 + CSW01_03525 0.72 -0.0
718,044 + CSW01_03525 0.73 -0.6
718,046 - CSW01_03525 0.73 -0.8
718,099 + CSW01_03525 0.75 +0.1
718,134 + CSW01_03525 0.77 +0.6
718,208 - CSW01_03525 0.80 -0.1
718,272 + CSW01_03525 0.83 +0.1
718,321 + CSW01_03525 0.85 -1.0
718,345 + CSW01_03525 0.86 -0.7
718,347 + CSW01_03525 0.86 -1.3
718,353 - CSW01_03525 0.87 -0.3
718,375 - CSW01_03525 0.88 +0.2
718,451 + +0.3
718,452 + -0.4
718,459 - +1.2
718,459 - -1.5
718,460 - -0.1
718,467 + -0.2
718,482 + +0.5
718,518 + -0.0
718,518 + +1.1
718,518 + -0.4
718,526 - +0.4
718,526 - +0.2
718,533 + -0.2
718,555 + -0.4
718,569 - +0.1
718,628 - -1.0
718,683 - -0.0
718,701 + +0.2
718,754 - CSW01_03530 0.11 +0.1
718,763 + CSW01_03530 0.12 -1.6
718,780 + CSW01_03530 0.15 -0.3
718,825 + CSW01_03530 0.20 -1.2
718,862 - CSW01_03530 0.25 +0.5
718,868 + CSW01_03530 0.26 -0.1
718,878 + CSW01_03530 0.27 -0.3
718,885 + CSW01_03530 0.28 +0.1
718,886 - CSW01_03530 0.28 +0.1
718,946 + CSW01_03530 0.35 +1.6
719,005 - CSW01_03530 0.43 +2.7
719,012 - CSW01_03530 0.44 +1.1
719,017 + CSW01_03530 0.44 -1.2
719,017 + CSW01_03530 0.44 +0.8
719,017 + CSW01_03530 0.44 -1.2
719,019 + CSW01_03530 0.45 -1.3
719,025 - CSW01_03530 0.45 -0.1
719,030 + CSW01_03530 0.46 +0.1
719,032 + CSW01_03530 0.46 -0.8
719,083 + CSW01_03530 0.53 -0.1
719,084 - CSW01_03530 0.53 -1.9
719,116 + CSW01_03530 0.57 +2.6
719,133 + CSW01_03530 0.59 +0.3
719,265 + CSW01_03530 0.76 +0.1
719,281 - CSW01_03530 0.78 +0.4
719,281 - CSW01_03530 0.78 -0.6
719,281 - CSW01_03530 0.78 +1.1
719,293 - CSW01_03530 0.79 +0.5
719,391 + +1.3
719,452 - +0.5

Or see this region's nucleotide sequence